Wall clock time and date at job start Mon Mar 30 2020 05:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99771 * 2 1 4 4 C 1.50701 * 109.47195 * 293.95760 * 3 2 1 5 5 H 1.08002 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99694 * 180.27796 * 4 3 2 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 3 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 3 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.46897 * 111.00356 * 123.95278 * 2 1 3 13 13 H 1.08996 * 109.53709 * 296.21561 * 12 2 1 14 14 C 1.53168 * 109.54200 * 176.04842 * 12 2 1 15 15 C 1.53093 * 109.13258 * 183.16289 * 14 12 2 16 16 O 1.42854 * 109.44959 * 57.59640 * 15 14 12 17 17 C 1.43262 * 114.00451 * 298.56070 * 16 15 14 18 18 C 1.53193 * 109.06805 * 180.53585 * 17 16 15 19 19 C 1.55089 * 109.02359 * 90.18282 * 18 17 16 20 20 S 1.83975 * 100.87859 * 41.65870 * 19 18 17 21 21 C 1.53940 * 108.67382 * 303.15598 * 17 16 15 22 22 C 1.53138 * 109.53364 * 56.45526 * 12 2 1 23 23 H 1.09002 * 109.47259 * 60.00262 * 1 2 3 24 24 H 1.09003 * 109.46525 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47311 * 299.99377 * 1 2 3 26 26 H 1.09000 * 109.47038 * 173.94903 * 3 2 1 27 27 H 1.09007 * 109.46566 * 53.95436 * 3 2 1 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.52375 * 303.05736 * 14 12 2 30 30 H 1.09003 * 109.52355 * 63.26347 * 14 12 2 31 31 H 1.08999 * 109.47370 * 177.58955 * 15 14 12 32 32 H 1.09002 * 109.46813 * 297.60446 * 15 14 12 33 33 H 1.09004 * 109.59426 * 210.12858 * 18 17 16 34 34 H 1.08999 * 109.59735 * 330.22992 * 18 17 16 35 35 H 1.08994 * 111.14270 * 159.56478 * 19 18 17 36 36 H 1.09003 * 111.13608 * 283.75878 * 19 18 17 37 37 H 1.08999 * 110.32425 * 1.11961 * 21 17 16 38 38 H 1.09007 * 110.31705 * 123.31920 * 21 17 16 39 39 H 1.08997 * 109.53676 * 297.00291 * 22 12 2 40 40 H 1.09003 * 109.53161 * 57.23344 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0487 6 6 2.0320 3.3475 -1.5309 7 7 2.7170 4.0000 -0.6174 8 14 1.5942 4.1825 -3.1435 9 1 0.2838 4.8676 -3.0064 10 1 2.6406 5.1793 -3.4849 11 1 1.5100 3.1644 -4.2213 12 6 1.9955 -0.7659 1.1375 13 1 1.7025 -0.2824 2.0694 14 6 3.5235 -0.8273 1.0506 15 6 4.0568 -1.6930 2.1951 16 8 3.4729 -2.9945 2.1190 17 6 2.0462 -3.0017 2.2488 18 6 1.5432 -4.4463 2.1647 19 6 1.5059 -5.0524 3.5918 20 16 0.8256 -3.6382 4.5520 21 6 1.6692 -2.3308 3.5821 22 6 1.4345 -2.1903 1.0994 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 3.0797 1.3445 0.1083 27 1 1.5610 1.9273 0.8310 28 1 2.9954 4.9146 -0.7811 29 1 3.8168 -1.2642 0.0960 30 1 3.9338 0.1792 1.1332 31 1 5.1406 -1.7757 2.1136 32 1 3.7979 -1.2337 3.1491 33 1 0.5414 -4.4601 1.7354 34 1 2.2150 -5.0313 1.5366 35 1 0.8397 -5.9139 3.6357 36 1 2.5071 -5.3143 3.9339 37 1 2.5653 -1.9923 4.1022 38 1 0.9932 -1.4939 3.4068 39 1 0.3509 -2.1584 1.2122 40 1 1.6894 -2.6570 0.1478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:28 Heat of formation + Delta-G solvation = -59.850229 kcal Electronic energy + Delta-G solvation = -19909.711233 eV Core-core repulsion = 17042.709072 eV Total energy + Delta-G solvation = -2867.002161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.39505 -38.26308 -35.60362 -34.88961 -32.93990 -31.26873 -29.68375 -28.65150 -27.14636 -25.43869 -24.19111 -23.20116 -21.30932 -20.27900 -18.61691 -17.89660 -17.65446 -16.74816 -16.69748 -16.53013 -15.79609 -15.50279 -15.36601 -14.95629 -14.59150 -14.30062 -13.87458 -13.85915 -13.78922 -13.24623 -13.05129 -12.97629 -12.73743 -12.70861 -12.49196 -12.37245 -12.30186 -12.18577 -12.10325 -11.37963 -11.25706 -11.20724 -11.07505 -10.60413 -10.46506 -9.04871 -8.77570 -8.21783 -6.31337 0.81117 1.31046 1.40011 1.41034 1.52730 2.38859 2.64580 3.10335 3.14471 3.38228 3.58144 3.73339 3.86203 4.00252 4.08653 4.12046 4.17759 4.29369 4.33248 4.44548 4.57262 4.62305 4.68264 4.73443 4.75296 4.81850 4.89586 4.95279 5.03229 5.11365 5.13272 5.19697 5.31426 5.32292 5.64473 6.04873 6.12992 6.31197 6.62401 6.84728 7.38287 8.89261 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.037354 B = 0.004329 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.408883 B = 6465.888839 C = 6654.737291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.542 5.542 3 C 0.205 3.795 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.967 3.033 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.265 1.265 12 C 0.081 3.919 13 H 0.022 0.978 14 C -0.144 4.144 15 C 0.065 3.935 16 O -0.374 6.374 17 C 0.120 3.880 18 C -0.109 4.109 19 C -0.050 4.050 20 S -0.331 6.331 21 C -0.092 4.092 22 C -0.120 4.120 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.005 0.995 26 H 0.017 0.983 27 H -0.046 1.046 28 H 0.264 0.736 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.116 0.884 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.327 -17.800 7.080 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.266 5.266 3 C 0.079 3.921 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.195 4.195 7 N -0.575 5.575 8 Si 0.792 3.208 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.189 1.189 12 C -0.028 4.028 13 H 0.040 0.960 14 C -0.182 4.182 15 C -0.012 4.012 16 O -0.293 6.293 17 C 0.078 3.922 18 C -0.147 4.147 19 C -0.198 4.198 20 S -0.106 6.106 21 C -0.241 4.241 22 C -0.159 4.159 23 H 0.076 0.924 24 H 0.103 0.897 25 H 0.024 0.976 26 H 0.035 0.965 27 H -0.028 1.028 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.738 -17.982 7.618 19.606 hybrid contribution 0.337 1.990 -0.741 2.150 sum -1.401 -15.992 6.877 17.464 Atomic orbital electron populations 1.22270 0.87769 1.01296 0.99771 1.62119 1.07935 1.15233 1.41272 1.19447 0.94497 0.83549 0.94575 1.21483 1.34723 0.97624 1.02399 0.91991 1.25882 0.94996 0.98040 1.00624 1.70076 1.39309 1.11946 1.36160 0.85411 0.77915 0.78147 0.79329 1.19917 1.20736 1.18890 1.21695 0.95201 0.94312 0.91563 0.96015 1.22218 0.95097 1.00388 1.00530 1.22677 0.99063 0.82922 0.96528 1.88037 1.19306 1.28482 1.93510 1.22384 0.81800 0.96155 0.91830 1.22355 1.03814 0.91369 0.97180 1.24439 1.04696 0.96775 0.93859 1.87923 1.66035 1.06395 1.50202 1.24767 1.03138 0.99078 0.97081 1.22326 1.00805 0.93515 0.99231 0.92432 0.89699 0.97646 0.96506 1.02803 0.92720 0.91243 0.92436 0.86632 0.92487 0.87762 0.87497 0.85006 0.88254 0.88428 0.88696 0.89780 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 9.00 127.69 1.15 2.56 16 2 N -0.54 -23.05 4.62 -901.00 -4.17 -27.22 16 3 C 0.21 10.90 4.54 85.56 0.39 11.29 16 4 C -0.52 -29.71 8.51 25.60 0.22 -29.50 16 5 H 0.06 3.45 7.10 -2.91 -0.02 3.43 16 6 C 0.00 0.14 5.46 84.65 0.46 0.61 16 7 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 8 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 12 C 0.08 2.79 1.74 45.02 0.08 2.87 16 13 H 0.02 0.80 6.59 -2.39 -0.02 0.78 16 14 C -0.14 -4.79 5.12 30.68 0.16 -4.64 16 15 C 0.06 1.66 6.48 72.01 0.47 2.13 16 16 O -0.37 -9.38 10.15 -148.98 -1.51 -10.89 16 17 C 0.12 2.73 1.01 -10.27 -0.01 2.72 16 18 C -0.11 -1.83 5.50 31.37 0.17 -1.66 16 19 C -0.05 -0.78 7.52 72.70 0.55 -0.23 16 20 S -0.33 -7.49 23.22 -56.49 -1.31 -8.81 16 21 C -0.09 -2.22 5.53 72.30 0.40 -1.82 16 22 C -0.12 -3.20 3.38 30.78 0.10 -3.10 16 23 H 0.06 2.36 6.86 -2.39 -0.02 2.34 16 24 H 0.08 2.57 6.09 -2.39 -0.01 2.56 16 25 H 0.00 0.19 8.14 -2.39 -0.02 0.18 16 26 H 0.02 0.95 5.90 -2.39 -0.01 0.94 16 27 H -0.05 -2.68 8.12 -2.38 -0.02 -2.70 16 28 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.41 16 30 H 0.06 2.19 6.39 -2.39 -0.02 2.17 16 31 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.06 1.40 6.05 -2.39 -0.01 1.38 16 33 H 0.10 1.55 7.84 -2.38 -0.02 1.53 16 34 H 0.11 1.61 8.06 -2.39 -0.02 1.59 16 35 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.10 2.36 6.04 -2.39 -0.01 2.35 16 38 H 0.09 2.50 6.47 -2.38 -0.02 2.48 16 39 H 0.08 2.09 6.45 -2.39 -0.02 2.08 16 40 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -64.76 311.05 0.47 -64.28 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 1.02 Total: 11.02 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 4.13 Total: -18.77 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -3.88 Total: -83.12 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.51 Total: -10.89 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -1.31 Total: -8.81 kcal Total: -64.76 0.47 -64.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.433 kcal (2) G-P(sol) polarization free energy of solvation -64.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds