Wall clock time and date at job start Mon Mar 30 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 119.99961 * 2 1 4 4 H 1.07996 * 120.00372 * 203.31323 * 3 2 1 5 5 C 1.38819 * 119.99590 * 23.31090 * 3 2 1 6 6 N 1.31612 * 120.00185 * 11.63370 * 5 3 2 7 7 Si 1.86799 * 119.99825 * 191.63600 * 5 3 2 8 8 H 1.48493 * 109.47244 * 59.99618 * 7 5 3 9 9 H 1.48496 * 109.47320 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46969 * 299.99875 * 7 5 3 11 11 C 1.46503 * 120.00440 * 180.02562 * 2 1 3 12 12 H 1.08997 * 109.54434 * 180.17303 * 11 2 1 13 13 C 1.53175 * 109.54143 * 59.99432 * 11 2 1 14 14 C 1.53098 * 109.13643 * 183.21559 * 13 11 2 15 15 O 1.42878 * 109.43869 * 57.52223 * 14 13 11 16 16 C 1.43077 * 114.06124 * 298.64675 * 15 14 13 17 17 C 1.52750 * 109.31931 * 180.95475 * 16 15 14 18 18 C 1.53078 * 109.84039 * 49.37085 * 17 16 15 19 19 S 1.81748 * 108.84402 * 63.26547 * 18 17 16 20 20 C 1.81756 * 102.20120 * 306.78986 * 19 18 17 21 21 C 1.52777 * 109.44449 * 301.98220 * 16 15 14 22 22 C 1.53158 * 109.53872 * 300.43438 * 11 2 1 23 23 H 1.08993 * 109.47083 * 274.06353 * 1 2 3 24 24 H 1.08999 * 109.47045 * 34.06736 * 1 2 3 25 25 H 1.09002 * 109.46594 * 154.06428 * 1 2 3 26 26 H 0.97000 * 120.00598 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.52883 * 63.32488 * 13 11 2 28 28 H 1.08997 * 109.53223 * 303.11423 * 13 11 2 29 29 H 1.09000 * 109.47503 * 297.53502 * 14 13 11 30 30 H 1.08994 * 109.47644 * 177.51190 * 14 13 11 31 31 H 1.09007 * 109.39432 * 289.28066 * 17 16 15 32 32 H 1.08994 * 109.39378 * 169.46619 * 17 16 15 33 33 H 1.08994 * 109.57681 * 183.07701 * 18 17 16 34 34 H 1.09005 * 109.57161 * 303.45749 * 18 17 16 35 35 H 1.08995 * 109.57475 * 173.00447 * 20 19 18 36 36 H 1.09002 * 109.57378 * 293.38883 * 20 19 18 37 37 H 1.08997 * 109.45926 * 190.55510 * 21 16 15 38 38 H 1.08997 * 109.32837 * 70.73618 * 21 16 15 39 39 H 1.09000 * 109.52812 * 57.17818 * 22 11 2 40 40 H 1.09007 * 109.52633 * 296.97750 * 22 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1635 1.2242 -0.3701 5 6 1.5405 2.3390 0.4758 6 7 0.4032 2.2592 1.1332 7 14 2.3350 4.0041 0.1827 8 1 2.4621 4.2418 -1.2776 9 1 1.4927 5.0676 0.7864 10 1 3.6822 4.0264 0.8069 11 6 2.1976 -1.2687 -0.0006 12 1 3.2695 -1.0708 0.0026 13 6 1.8287 -2.0728 -1.2510 14 6 2.5367 -3.4294 -1.2023 15 8 2.1668 -4.1161 -0.0052 16 6 2.5355 -3.4331 1.1967 17 6 2.1124 -4.2691 2.4031 18 6 2.5905 -5.7128 2.2282 19 16 4.4074 -5.7283 2.1852 20 6 4.7713 -4.5139 0.8828 21 6 4.0462 -3.2060 1.2097 22 6 1.8206 -2.0785 1.2436 23 1 -0.3633 0.0728 1.0250 24 1 -0.3633 0.8513 -0.5757 25 1 -0.3632 -0.9242 -0.4495 26 1 -0.0228 3.0649 1.4654 27 1 2.1452 -1.5285 -2.1407 28 1 0.7499 -2.2258 -1.2807 29 1 3.6159 -3.2767 -1.2150 30 1 2.2433 -4.0237 -2.0676 31 1 1.0259 -4.2555 2.4898 32 1 2.5529 -3.8488 3.3071 33 1 2.2397 -6.3175 3.0644 34 1 2.1996 -6.1162 1.2940 35 1 5.8456 -4.3350 0.8402 36 1 4.4239 -4.8937 -0.0780 37 1 4.3528 -2.8589 2.1965 38 1 4.3042 -2.4532 0.4649 39 1 0.7422 -2.2359 1.2628 40 1 2.1265 -1.5357 2.1381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094375422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:40 Heat of formation + Delta-G solvation = -30.403091 kcal Electronic energy + Delta-G solvation = -20409.696388 eV Core-core repulsion = 17543.971151 eV Total energy + Delta-G solvation = -2865.725237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13901 -35.94791 -34.54714 -32.49744 -31.59035 -29.82852 -29.58391 -26.03673 -25.13991 -23.37370 -23.23361 -22.28474 -20.07246 -18.63102 -17.11113 -16.76999 -15.88340 -15.19454 -14.91224 -14.83372 -14.43785 -13.82880 -13.71039 -13.48459 -13.25072 -12.93613 -12.66432 -12.47199 -12.27572 -11.96843 -11.73997 -11.34809 -11.08033 -10.95717 -10.91767 -10.69964 -10.54642 -10.36927 -10.23910 -10.12844 -9.91617 -9.69522 -9.35907 -9.12517 -8.55501 -7.63816 -6.76218 -5.73983 -3.20894 1.86078 2.57913 3.36429 3.42169 3.42677 3.92375 4.45496 4.75415 4.75900 4.88651 5.01441 5.24238 5.27485 5.30561 5.36271 5.42312 5.52973 5.60147 5.65885 5.70818 5.83865 5.84848 5.96732 6.00960 6.07920 6.15175 6.22107 6.32913 6.42193 6.58605 6.74940 6.90658 6.97336 7.37868 7.48998 7.71704 7.78202 8.38483 9.22139 9.85468 10.35352 11.30585 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.005121 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.179739 B = 5465.952241 C = 5596.388899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.594 5.594 3 C -0.257 4.257 4 H 0.066 0.934 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.179 3.821 12 H 0.063 0.937 13 C -0.169 4.169 14 C 0.062 3.938 15 O -0.376 6.376 16 C 0.115 3.885 17 C -0.105 4.105 18 C -0.070 4.070 19 S -0.284 6.284 20 C -0.071 4.071 21 C -0.149 4.149 22 C -0.148 4.148 23 H 0.028 0.972 24 H 0.041 0.959 25 H -0.002 1.002 26 H 0.253 0.747 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.697 -13.987 -0.554 14.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.315 5.315 3 C -0.387 4.387 4 H 0.084 0.916 5 C -0.195 4.195 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.070 3.930 12 H 0.081 0.919 13 C -0.209 4.209 14 C -0.015 4.015 15 O -0.296 6.296 16 C 0.075 3.925 17 C -0.144 4.144 18 C -0.218 4.218 19 S -0.058 6.058 20 C -0.219 4.219 21 C -0.188 4.188 22 C -0.188 4.188 23 H 0.046 0.954 24 H 0.060 0.940 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.191 -14.597 0.136 15.494 hybrid contribution -0.400 2.002 -0.849 2.211 sum 4.791 -12.596 -0.714 13.495 Atomic orbital electron populations 1.20743 0.82763 0.95462 0.99129 1.43919 1.01763 1.00080 1.85779 1.19163 0.98456 0.85657 1.35390 0.91629 1.25028 0.97796 0.98504 0.98161 1.70049 1.18683 1.27337 1.39121 0.86347 0.78524 0.83859 0.77862 1.21098 1.21608 1.20954 1.20369 0.95803 0.86181 0.90606 0.91924 1.22752 1.01486 0.95540 1.01094 1.22559 0.98226 0.93794 0.86904 1.87885 1.81499 1.46844 1.13329 1.21556 0.92775 0.92955 0.85210 1.21768 1.02263 0.93241 0.97138 1.23312 0.92545 1.00076 1.05873 1.86631 1.09447 1.57416 1.52346 1.23361 1.03301 0.96062 0.99215 1.22413 0.95517 0.96656 1.04177 1.22753 1.00653 0.93733 1.01640 0.95416 0.94019 0.98320 0.93699 0.91376 0.91486 0.93473 0.89744 0.90166 0.89644 0.88395 0.88879 0.88327 0.89347 0.89772 0.89674 0.91512 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 7.94 59.85 0.48 4.48 16 2 N -0.59 -14.54 2.82 -173.29 -0.49 -15.03 16 3 C -0.26 -6.95 9.59 -15.05 -0.14 -7.09 16 4 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 5 C 0.00 0.10 5.12 -17.43 -0.09 0.01 16 6 N -0.91 -26.25 10.66 55.49 0.59 -25.65 16 7 Si 0.90 21.66 29.57 -169.99 -5.03 16.63 16 8 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.18 3.50 2.37 -67.76 -0.16 3.34 16 12 H 0.06 1.24 6.07 -51.93 -0.32 0.92 16 13 C -0.17 -2.86 5.46 -26.59 -0.15 -3.00 16 14 C 0.06 0.86 6.05 37.21 0.23 1.09 16 15 O -0.38 -5.51 8.17 -35.23 -0.29 -5.80 16 16 C 0.12 1.65 0.67 -90.74 -0.06 1.59 16 17 C -0.11 -1.34 4.87 -26.82 -0.13 -1.47 16 18 C -0.07 -0.82 6.26 37.20 0.23 -0.59 16 19 S -0.28 -3.59 22.33 -107.50 -2.40 -5.99 16 20 C -0.07 -0.85 6.06 37.20 0.23 -0.63 16 21 C -0.15 -1.98 4.00 -26.81 -0.11 -2.09 16 22 C -0.15 -2.63 4.20 -26.52 -0.11 -2.74 16 23 H 0.03 0.73 7.40 -51.93 -0.38 0.35 16 24 H 0.04 1.10 7.25 -51.93 -0.38 0.73 16 25 H 0.00 -0.04 6.39 -51.93 -0.33 -0.37 16 26 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.07 1.20 6.56 -51.93 -0.34 0.86 16 29 H 0.05 0.61 5.89 -51.93 -0.31 0.30 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 32 H 0.09 1.07 8.03 -51.93 -0.42 0.65 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.15 7.34 -51.92 -0.38 0.76 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.07 6.42 -51.93 -0.33 0.73 16 37 H 0.08 1.13 8.03 -51.93 -0.42 0.72 16 38 H 0.08 1.18 4.99 -51.93 -0.26 0.92 16 39 H 0.07 1.27 7.57 -51.93 -0.39 0.87 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 304.36 15.07 4.59 4.59 Total: -1.00 -28.79 304.36 -9.15 -37.94 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.33 Total: 0.41 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 0.21 Total: -7.10 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.10 Total: -40.68 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.29 Total: -5.80 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.40 Total: -5.99 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.79 -9.15 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.536 kcal (2) G-P(sol) polarization free energy of solvation -28.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds