Wall clock time and date at job start Mon Mar 30 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 119.99961 * 2 1 4 4 H 1.07996 * 120.00372 * 203.31323 * 3 2 1 5 5 C 1.38819 * 119.99590 * 23.31090 * 3 2 1 6 6 N 1.31612 * 120.00185 * 11.63370 * 5 3 2 7 7 Si 1.86799 * 119.99825 * 191.63600 * 5 3 2 8 8 H 1.48493 * 109.47244 * 59.99618 * 7 5 3 9 9 H 1.48496 * 109.47320 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46969 * 299.99875 * 7 5 3 11 11 C 1.46503 * 120.00440 * 180.02562 * 2 1 3 12 12 H 1.08997 * 109.54434 * 180.17303 * 11 2 1 13 13 C 1.53175 * 109.54143 * 59.99432 * 11 2 1 14 14 C 1.53098 * 109.13643 * 183.21559 * 13 11 2 15 15 O 1.42878 * 109.43869 * 57.52223 * 14 13 11 16 16 C 1.43077 * 114.06124 * 298.64675 * 15 14 13 17 17 C 1.52750 * 109.31931 * 180.95475 * 16 15 14 18 18 C 1.53078 * 109.84039 * 49.37085 * 17 16 15 19 19 S 1.81748 * 108.84402 * 63.26547 * 18 17 16 20 20 C 1.81756 * 102.20120 * 306.78986 * 19 18 17 21 21 C 1.52777 * 109.44449 * 301.98220 * 16 15 14 22 22 C 1.53158 * 109.53872 * 300.43438 * 11 2 1 23 23 H 1.08993 * 109.47083 * 274.06353 * 1 2 3 24 24 H 1.08999 * 109.47045 * 34.06736 * 1 2 3 25 25 H 1.09002 * 109.46594 * 154.06428 * 1 2 3 26 26 H 0.97000 * 120.00598 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.52883 * 63.32488 * 13 11 2 28 28 H 1.08997 * 109.53223 * 303.11423 * 13 11 2 29 29 H 1.09000 * 109.47503 * 297.53502 * 14 13 11 30 30 H 1.08994 * 109.47644 * 177.51190 * 14 13 11 31 31 H 1.09007 * 109.39432 * 289.28066 * 17 16 15 32 32 H 1.08994 * 109.39378 * 169.46619 * 17 16 15 33 33 H 1.08994 * 109.57681 * 183.07701 * 18 17 16 34 34 H 1.09005 * 109.57161 * 303.45749 * 18 17 16 35 35 H 1.08995 * 109.57475 * 173.00447 * 20 19 18 36 36 H 1.09002 * 109.57378 * 293.38883 * 20 19 18 37 37 H 1.08997 * 109.45926 * 190.55510 * 21 16 15 38 38 H 1.08997 * 109.32837 * 70.73618 * 21 16 15 39 39 H 1.09000 * 109.52812 * 57.17818 * 22 11 2 40 40 H 1.09007 * 109.52633 * 296.97750 * 22 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1635 1.2242 -0.3701 5 6 1.5405 2.3390 0.4758 6 7 0.4032 2.2592 1.1332 7 14 2.3350 4.0041 0.1827 8 1 2.4621 4.2418 -1.2776 9 1 1.4927 5.0676 0.7864 10 1 3.6822 4.0264 0.8069 11 6 2.1976 -1.2687 -0.0006 12 1 3.2695 -1.0708 0.0026 13 6 1.8287 -2.0728 -1.2510 14 6 2.5367 -3.4294 -1.2023 15 8 2.1668 -4.1161 -0.0052 16 6 2.5355 -3.4331 1.1967 17 6 2.1124 -4.2691 2.4031 18 6 2.5905 -5.7128 2.2282 19 16 4.4074 -5.7283 2.1852 20 6 4.7713 -4.5139 0.8828 21 6 4.0462 -3.2060 1.2097 22 6 1.8206 -2.0785 1.2436 23 1 -0.3633 0.0728 1.0250 24 1 -0.3633 0.8513 -0.5757 25 1 -0.3632 -0.9242 -0.4495 26 1 -0.0228 3.0649 1.4654 27 1 2.1452 -1.5285 -2.1407 28 1 0.7499 -2.2258 -1.2807 29 1 3.6159 -3.2767 -1.2150 30 1 2.2433 -4.0237 -2.0676 31 1 1.0259 -4.2555 2.4898 32 1 2.5529 -3.8488 3.3071 33 1 2.2397 -6.3175 3.0644 34 1 2.1996 -6.1162 1.2940 35 1 5.8456 -4.3350 0.8402 36 1 4.4239 -4.8937 -0.0780 37 1 4.3528 -2.8589 2.1965 38 1 4.3042 -2.4532 0.4649 39 1 0.7422 -2.2359 1.2628 40 1 2.1265 -1.5357 2.1381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:40 Heat of formation + Delta-G solvation = -46.070392 kcal Electronic energy + Delta-G solvation = -20410.375773 eV Core-core repulsion = 17543.971151 eV Total energy + Delta-G solvation = -2866.404622 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39708 -37.68130 -35.70335 -34.27498 -32.64481 -31.60810 -30.81092 -28.07064 -26.56733 -24.76651 -24.30482 -23.82925 -21.44849 -20.01170 -18.84818 -18.07874 -17.27083 -16.74656 -16.22436 -16.15450 -15.82260 -15.27602 -15.01998 -14.70345 -14.58549 -14.48125 -14.04704 -13.88471 -13.64156 -13.16375 -13.04202 -12.86818 -12.78726 -12.47289 -12.44214 -12.26065 -12.17331 -12.01020 -11.86628 -11.80974 -11.52695 -10.87369 -10.64897 -10.57210 -10.36345 -8.78183 -8.61848 -7.83292 -5.32247 0.91377 1.45294 1.47275 1.53842 1.62861 2.48939 2.78128 3.29252 3.50927 3.68470 3.70654 3.82687 3.99766 4.01249 4.22731 4.28844 4.35034 4.41756 4.46773 4.51251 4.53077 4.74856 4.77861 4.80582 4.86501 4.92340 4.94845 5.02277 5.05033 5.07950 5.23419 5.31143 5.39801 5.51115 5.61777 5.68616 6.30118 6.32229 7.14240 7.86798 8.31890 9.19683 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.005121 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.179739 B = 5465.952241 C = 5596.388899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.610 5.610 3 C -0.264 4.264 4 H 0.070 0.930 5 C -0.052 4.052 6 N -0.939 5.939 7 Si 0.967 3.033 8 H -0.279 1.279 9 H -0.296 1.296 10 H -0.275 1.275 11 C 0.172 3.828 12 H 0.061 0.939 13 C -0.160 4.160 14 C 0.066 3.934 15 O -0.377 6.377 16 C 0.123 3.877 17 C -0.105 4.105 18 C -0.061 4.061 19 S -0.299 6.299 20 C -0.064 4.064 21 C -0.145 4.145 22 C -0.137 4.137 23 H 0.000 1.000 24 H 0.013 0.987 25 H 0.025 0.975 26 H 0.247 0.753 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.073 -15.487 -1.244 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.332 5.332 3 C -0.395 4.395 4 H 0.088 0.912 5 C -0.247 4.247 6 N -0.586 5.586 7 Si 0.796 3.204 8 H -0.205 1.205 9 H -0.222 1.222 10 H -0.201 1.201 11 C 0.066 3.934 12 H 0.079 0.921 13 C -0.199 4.199 14 C -0.010 4.010 15 O -0.296 6.296 16 C 0.083 3.917 17 C -0.144 4.144 18 C -0.209 4.209 19 S -0.073 6.073 20 C -0.212 4.212 21 C -0.184 4.184 22 C -0.177 4.177 23 H 0.018 0.982 24 H 0.032 0.968 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.134 0.866 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.595 -16.138 -0.567 17.443 hybrid contribution -0.822 2.429 -0.647 2.644 sum 5.773 -13.710 -1.214 14.925 Atomic orbital electron populations 1.20409 0.83282 0.95429 0.97118 1.44153 1.01787 1.01304 1.85973 1.19527 0.98664 0.86866 1.34401 0.91184 1.25788 0.98530 1.01864 0.98514 1.70223 1.20153 1.27657 1.40570 0.85339 0.77719 0.79574 0.77802 1.20461 1.22183 1.20059 1.20596 0.95229 0.84882 0.92713 0.92058 1.22618 1.01101 0.96991 0.99219 1.22639 0.98742 0.92171 0.87488 1.87906 1.81658 1.46570 1.13463 1.21453 0.93126 0.91114 0.86038 1.21755 1.02415 0.93888 0.96310 1.23284 0.91761 0.99232 1.06602 1.86738 1.10275 1.57565 1.52761 1.23337 1.04067 0.94749 0.99005 1.22346 0.94684 0.97468 1.03913 1.22561 1.00000 0.95502 0.99650 0.98185 0.96826 0.95678 0.94351 0.91544 0.92637 0.91942 0.87090 0.90087 0.89498 0.86578 0.89032 0.86797 0.88928 0.90094 0.90210 0.93079 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.19 7.94 127.77 1.01 10.20 16 2 N -0.61 -30.24 2.82 -702.16 -1.98 -32.22 16 3 C -0.26 -14.40 9.59 84.03 0.81 -13.60 16 4 H 0.07 3.67 7.82 -2.91 -0.02 3.65 16 5 C -0.05 -2.91 5.12 84.86 0.43 -2.47 16 6 N -0.94 -55.89 10.66 21.65 0.23 -55.66 16 7 Si 0.97 44.92 29.57 68.60 2.03 46.94 16 8 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 9 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 11 C 0.17 6.69 2.37 45.10 0.11 6.80 16 12 H 0.06 2.39 6.07 -2.39 -0.01 2.37 16 13 C -0.16 -5.16 5.46 30.69 0.17 -4.99 16 14 C 0.07 1.64 6.05 72.01 0.44 2.08 16 15 O -0.38 -10.06 8.17 -148.98 -1.22 -11.28 16 16 C 0.12 3.34 0.67 -10.87 -0.01 3.33 16 17 C -0.10 -2.50 4.87 30.54 0.15 -2.35 16 18 C -0.06 -1.28 6.26 72.01 0.45 -0.83 16 19 S -0.30 -6.82 22.33 -56.49 -1.26 -8.08 16 20 C -0.06 -1.35 6.06 72.01 0.44 -0.91 16 21 C -0.15 -3.59 4.00 30.55 0.12 -3.47 16 22 C -0.14 -4.88 4.20 30.73 0.13 -4.75 16 23 H 0.00 -0.01 7.40 -2.39 -0.02 -0.02 16 24 H 0.01 0.72 7.25 -2.39 -0.02 0.70 16 25 H 0.02 1.10 6.39 -2.39 -0.02 1.08 16 26 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.05 1.92 6.56 -2.39 -0.02 1.90 16 29 H 0.06 1.39 5.89 -2.39 -0.01 1.38 16 30 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.08 1.93 8.09 -2.38 -0.02 1.91 16 32 H 0.09 2.06 8.03 -2.39 -0.02 2.04 16 33 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.09 1.99 7.34 -2.38 -0.02 1.97 16 35 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 1.91 6.42 -2.39 -0.02 1.90 16 37 H 0.08 2.07 8.03 -2.39 -0.02 2.05 16 38 H 0.08 2.07 4.99 -2.39 -0.01 2.06 16 39 H 0.05 1.95 7.57 -2.39 -0.02 1.94 16 40 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -61.98 304.36 3.06 -58.92 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.01 Total: 12.33 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 4.24 Total: -10.96 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -1.75 Total: -87.87 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -1.22 Total: -11.28 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: -6.82 SS G_CDS: -1.26 Total: -8.08 kcal Total: -61.98 3.06 -58.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.849 kcal (2) G-P(sol) polarization free energy of solvation -61.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds