Wall clock time and date at job start Mon Mar 30 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39652 * 120.14527 * 158.08755 * 3 2 1 5 5 C 1.37924 * 119.84822 * 179.97438 * 4 3 2 6 6 C 1.38385 * 120.14896 * 0.02562 * 5 4 3 7 7 C 1.38345 * 120.30454 * 359.70220 * 6 5 4 8 8 C 1.37959 * 120.14965 * 0.54977 * 7 6 5 9 9 C 1.50702 * 120.07749 * 179.74380 * 8 7 6 10 10 N 1.46898 * 109.47650 * 259.72965 * 9 8 7 11 11 C 1.46900 * 111.00355 * 190.00114 * 10 9 8 12 12 C 1.53235 * 109.34263 * 187.25389 * 11 10 9 13 13 N 1.47086 * 108.51886 * 306.16546 * 12 11 10 14 14 C 1.36930 * 120.88084 * 231.18344 * 13 12 11 15 15 H 1.08003 * 120.00034 * 27.13616 * 14 13 12 16 16 C 1.38810 * 119.99851 * 206.85031 * 14 13 12 17 17 N 1.31624 * 120.00188 * 17.17041 * 16 14 13 18 18 Si 1.86800 * 120.00209 * 197.16621 * 16 14 13 19 19 H 1.48501 * 109.47038 * 90.00165 * 18 16 14 20 20 H 1.48496 * 109.47422 * 210.00457 * 18 16 14 21 21 H 1.48499 * 109.47085 * 330.00676 * 18 16 14 22 22 C 1.47081 * 118.23455 * 51.46100 * 13 12 11 23 23 C 1.46901 * 110.99711 * 314.29968 * 10 9 8 24 24 H 1.07997 * 120.07917 * 359.95530 * 4 3 2 25 25 H 1.08001 * 119.93225 * 180.02562 * 5 4 3 26 26 H 1.08007 * 119.84726 * 180.02562 * 6 5 4 27 27 H 1.08003 * 119.92045 * 180.28168 * 7 6 5 28 28 H 1.09004 * 109.46903 * 139.72540 * 9 8 7 29 29 H 1.09001 * 109.47175 * 19.72952 * 9 8 7 30 30 H 1.09002 * 109.49350 * 67.29049 * 11 10 9 31 31 H 1.09006 * 109.50970 * 307.22448 * 11 10 9 32 32 H 1.08998 * 109.62971 * 186.46211 * 12 11 10 33 33 H 1.09003 * 109.79054 * 65.96881 * 12 11 10 34 34 H 0.96996 * 120.00064 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.63185 * 68.25003 * 22 13 12 36 36 H 1.08998 * 109.62646 * 188.83355 * 22 13 12 37 37 H 1.09000 * 109.49497 * 292.70822 * 23 10 9 38 38 H 1.09005 * 109.49279 * 52.75985 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.1214 -0.4507 5 6 4.6480 1.1155 -0.4475 6 6 5.3374 0.0023 0.0004 7 6 4.6494 -1.1092 0.4535 8 6 3.2699 -1.1188 0.4509 9 6 2.5221 -2.3326 0.9394 10 7 2.0707 -3.1259 -0.2116 11 6 1.1412 -4.1827 0.2093 12 6 0.8368 -5.0955 -0.9833 13 7 0.3667 -4.2627 -2.1009 14 6 -0.7959 -4.5618 -2.7595 15 1 -1.5849 -5.0933 -2.2482 16 6 -0.9628 -4.1766 -4.0827 17 7 0.0830 -3.8369 -4.8061 18 14 -2.6715 -4.1405 -4.8366 19 1 -3.2755 -2.7997 -4.6298 20 1 -2.5766 -4.4216 -6.2916 21 1 -3.5208 -5.1713 -4.1876 22 6 1.1818 -3.1040 -2.4961 23 6 1.4696 -2.2662 -1.2400 24 1 2.7321 1.9905 -0.8012 25 1 5.1914 1.9817 -0.7954 26 1 6.4174 0.0032 0.0011 27 1 5.1937 -1.9729 0.8059 28 1 1.6582 -2.0162 1.5240 29 1 3.1802 -2.9384 1.5624 30 1 0.2159 -3.7317 0.5677 31 1 1.5942 -4.7684 1.0093 32 1 0.0617 -5.8108 -0.7084 33 1 1.7398 -5.6295 -1.2792 34 1 -0.0336 -3.5681 -5.7308 35 1 2.1192 -3.4476 -2.9334 36 1 0.6348 -2.5021 -3.2218 37 1 0.5397 -1.8419 -0.8614 38 1 2.1608 -1.4616 -1.4911 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103882396.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:07 Heat of formation + Delta-G solvation = 104.843817 kcal Electronic energy + Delta-G solvation = -20822.456899 eV Core-core repulsion = 17859.445208 eV Total energy + Delta-G solvation = -2963.011691 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17953 -37.75427 -36.31408 -34.59071 -32.17322 -31.40914 -30.57598 -29.83949 -27.30143 -24.89693 -23.72999 -22.80121 -22.42249 -21.15384 -19.15237 -18.58314 -16.79909 -16.07388 -15.74132 -15.46364 -14.72176 -14.50844 -14.28433 -13.91128 -13.61872 -13.48346 -13.16005 -12.97701 -12.89581 -12.77821 -12.36917 -12.24384 -11.80181 -11.43811 -11.26659 -11.18303 -10.98283 -10.71650 -10.42577 -10.19192 -10.02547 -9.73672 -9.61285 -9.02558 -8.87893 -8.46310 -7.76477 -6.62591 -5.74018 -3.15100 0.72448 1.20994 2.81261 3.01283 3.41556 3.48090 3.49032 3.79672 3.94019 4.48251 4.54964 4.64750 4.69831 4.85235 5.15122 5.28624 5.42689 5.45812 5.49652 5.54165 5.72984 5.84839 5.91458 5.96186 6.11966 6.15843 6.23841 6.27509 6.34533 6.41412 6.54661 6.69754 6.71968 6.94335 7.26565 7.54260 7.61922 7.66048 7.72089 7.84906 8.47617 9.25181 9.88657 10.47094 11.34720 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.005530 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.590728 B = 5062.182409 C = 5420.095607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C 0.250 3.750 3 C -0.020 4.020 4 C -0.075 4.075 5 C -0.124 4.124 6 C -0.093 4.093 7 C -0.103 4.103 8 C -0.028 4.028 9 C 0.080 3.920 10 N -0.522 5.522 11 C 0.044 3.956 12 C 0.150 3.850 13 N -0.594 5.594 14 C -0.251 4.251 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.182 3.818 23 C 0.010 3.990 24 H 0.131 0.869 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.134 0.866 28 H 0.037 0.963 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.027 0.973 34 H 0.253 0.747 35 H 0.026 0.974 36 H 0.086 0.914 37 H 0.038 0.962 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.169 8.477 11.667 18.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.065 4.065 3 C -0.024 4.024 4 C -0.095 4.095 5 C -0.142 4.142 6 C -0.112 4.112 7 C -0.121 4.121 8 C -0.031 4.031 9 C -0.047 4.047 10 N -0.247 5.247 11 C -0.085 4.085 12 C 0.023 3.977 13 N -0.318 5.318 14 C -0.380 4.380 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.056 3.944 23 C -0.119 4.119 24 H 0.149 0.851 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.152 0.848 28 H 0.055 0.945 29 H 0.105 0.895 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.773 8.262 11.278 17.649 hybrid contribution -1.115 0.445 -0.185 1.215 sum 9.657 8.707 11.093 17.092 Atomic orbital electron populations 1.81295 1.11917 1.07369 1.07461 1.25523 0.92798 0.93654 0.94493 1.16012 0.84564 0.96239 1.05584 1.21132 0.94500 0.96605 0.97287 1.21049 0.93495 0.99016 1.00684 1.21369 1.00317 0.92975 0.96556 1.20978 0.92616 0.98659 0.99891 1.19899 0.94074 0.93227 0.95886 1.21243 0.97874 0.91741 0.93867 1.62187 1.40734 1.12638 1.09125 1.22663 0.93159 0.93816 0.98875 1.20959 0.97182 0.91978 0.87589 1.44127 1.24686 1.27031 1.35914 1.19194 0.91592 1.34706 0.92544 0.91703 1.25009 0.97085 1.01890 0.95676 1.70029 1.27492 1.49626 1.07641 0.86301 0.84365 0.77959 0.78252 1.21517 1.21689 1.20432 1.20917 0.94415 0.87910 0.91128 1.23646 0.96517 0.96436 0.95327 0.85097 0.85144 0.85330 0.84819 0.94507 0.89523 0.95455 0.91799 0.92575 0.95524 0.93663 0.95596 0.89566 0.94386 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.74 17.27 41.84 0.72 -7.02 16 2 C 0.25 4.11 10.86 -22.47 -0.24 3.87 16 3 C -0.02 -0.27 4.20 -106.93 -0.45 -0.72 16 4 C -0.07 -0.79 9.76 -39.17 -0.38 -1.17 16 5 C -0.12 -1.06 10.03 -39.64 -0.40 -1.46 16 6 C -0.09 -0.79 10.04 -39.49 -0.40 -1.19 16 7 C -0.10 -1.05 9.66 -39.64 -0.38 -1.43 16 8 C -0.03 -0.36 4.58 -104.21 -0.48 -0.84 16 9 C 0.08 1.15 5.17 -4.98 -0.03 1.12 16 10 N -0.52 -9.54 4.77 -235.46 -1.12 -10.67 16 11 C 0.04 0.83 5.58 -3.70 -0.02 0.81 16 12 C 0.15 3.31 6.69 -3.60 -0.02 3.28 16 13 N -0.59 -15.79 3.03 -171.73 -0.52 -16.31 16 14 C -0.25 -7.22 9.63 -15.06 -0.15 -7.37 16 15 H 0.07 1.84 7.88 -52.48 -0.41 1.42 16 16 C 0.00 0.05 4.93 -17.43 -0.09 -0.03 16 17 N -0.90 -27.12 11.16 55.49 0.62 -26.50 16 18 Si 0.90 22.66 29.59 -169.99 -5.03 17.63 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.18 4.67 5.45 -3.36 -0.02 4.65 16 23 C 0.01 0.20 3.86 -3.46 -0.01 0.19 16 24 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 25 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 26 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 27 H 0.13 1.13 8.03 -52.48 -0.42 0.71 16 28 H 0.04 0.56 7.42 -51.93 -0.39 0.17 16 29 H 0.09 1.03 8.00 -51.93 -0.42 0.61 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 32 H 0.06 1.19 7.95 -51.93 -0.41 0.78 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 2.46 6.12 -51.93 -0.32 2.15 16 37 H 0.04 0.86 5.21 -51.93 -0.27 0.59 16 38 H 0.07 1.30 4.95 -51.93 -0.26 1.05 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -32.98 308.16 -8.74 -41.72 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -4.99 Total: -3.21 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -3.06 Total: -0.29 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.30 Total: -60.49 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.03 Total: 17.63 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.98 -8.74 -41.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103882396.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.559 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds