Wall clock time and date at job start Mon Mar 30 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39652 * 120.14527 * 158.08755 * 3 2 1 5 5 C 1.37924 * 119.84822 * 179.97438 * 4 3 2 6 6 C 1.38385 * 120.14896 * 0.02562 * 5 4 3 7 7 C 1.38345 * 120.30454 * 359.70220 * 6 5 4 8 8 C 1.37959 * 120.14965 * 0.54977 * 7 6 5 9 9 C 1.50702 * 120.07749 * 179.74380 * 8 7 6 10 10 N 1.46898 * 109.47650 * 259.72965 * 9 8 7 11 11 C 1.46900 * 111.00355 * 190.00114 * 10 9 8 12 12 C 1.53235 * 109.34263 * 187.25389 * 11 10 9 13 13 N 1.47086 * 108.51886 * 306.16546 * 12 11 10 14 14 C 1.36930 * 120.88084 * 231.18344 * 13 12 11 15 15 H 1.08003 * 120.00034 * 27.13616 * 14 13 12 16 16 C 1.38810 * 119.99851 * 206.85031 * 14 13 12 17 17 N 1.31624 * 120.00188 * 17.17041 * 16 14 13 18 18 Si 1.86800 * 120.00209 * 197.16621 * 16 14 13 19 19 H 1.48501 * 109.47038 * 90.00165 * 18 16 14 20 20 H 1.48496 * 109.47422 * 210.00457 * 18 16 14 21 21 H 1.48499 * 109.47085 * 330.00676 * 18 16 14 22 22 C 1.47081 * 118.23455 * 51.46100 * 13 12 11 23 23 C 1.46901 * 110.99711 * 314.29968 * 10 9 8 24 24 H 1.07997 * 120.07917 * 359.95530 * 4 3 2 25 25 H 1.08001 * 119.93225 * 180.02562 * 5 4 3 26 26 H 1.08007 * 119.84726 * 180.02562 * 6 5 4 27 27 H 1.08003 * 119.92045 * 180.28168 * 7 6 5 28 28 H 1.09004 * 109.46903 * 139.72540 * 9 8 7 29 29 H 1.09001 * 109.47175 * 19.72952 * 9 8 7 30 30 H 1.09002 * 109.49350 * 67.29049 * 11 10 9 31 31 H 1.09006 * 109.50970 * 307.22448 * 11 10 9 32 32 H 1.08998 * 109.62971 * 186.46211 * 12 11 10 33 33 H 1.09003 * 109.79054 * 65.96881 * 12 11 10 34 34 H 0.96996 * 120.00064 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.63185 * 68.25003 * 22 13 12 36 36 H 1.08998 * 109.62646 * 188.83355 * 22 13 12 37 37 H 1.09000 * 109.49497 * 292.70822 * 23 10 9 38 38 H 1.09005 * 109.49279 * 52.75985 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.1214 -0.4507 5 6 4.6480 1.1155 -0.4475 6 6 5.3374 0.0023 0.0004 7 6 4.6494 -1.1092 0.4535 8 6 3.2699 -1.1188 0.4509 9 6 2.5221 -2.3326 0.9394 10 7 2.0707 -3.1259 -0.2116 11 6 1.1412 -4.1827 0.2093 12 6 0.8368 -5.0955 -0.9833 13 7 0.3667 -4.2627 -2.1009 14 6 -0.7959 -4.5618 -2.7595 15 1 -1.5849 -5.0933 -2.2482 16 6 -0.9628 -4.1766 -4.0827 17 7 0.0830 -3.8369 -4.8061 18 14 -2.6715 -4.1405 -4.8366 19 1 -3.2755 -2.7997 -4.6298 20 1 -2.5766 -4.4216 -6.2916 21 1 -3.5208 -5.1713 -4.1876 22 6 1.1818 -3.1040 -2.4961 23 6 1.4696 -2.2662 -1.2400 24 1 2.7321 1.9905 -0.8012 25 1 5.1914 1.9817 -0.7954 26 1 6.4174 0.0032 0.0011 27 1 5.1937 -1.9729 0.8059 28 1 1.6582 -2.0162 1.5240 29 1 3.1802 -2.9384 1.5624 30 1 0.2159 -3.7317 0.5677 31 1 1.5942 -4.7684 1.0093 32 1 0.0617 -5.8108 -0.7084 33 1 1.7398 -5.6295 -1.2792 34 1 -0.0336 -3.5681 -5.7308 35 1 2.1192 -3.4476 -2.9334 36 1 0.6348 -2.5021 -3.2218 37 1 0.5397 -1.8419 -0.8614 38 1 2.1608 -1.4616 -1.4911 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103882396.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:07 Heat of formation + Delta-G solvation = 83.084032 kcal Electronic energy + Delta-G solvation = -20823.400474 eV Core-core repulsion = 17859.445208 eV Total energy + Delta-G solvation = -2963.955266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.22823 -39.19451 -37.60848 -36.30788 -33.78081 -32.30530 -32.10045 -31.58493 -28.86958 -26.50844 -24.77536 -24.38671 -24.07417 -22.25305 -20.91621 -19.56471 -18.78699 -17.27361 -16.94878 -16.69719 -16.38420 -15.90357 -15.48981 -15.43362 -15.23072 -15.13032 -14.69334 -14.51031 -14.14731 -14.00139 -13.59447 -13.34607 -13.27404 -13.01675 -12.95748 -12.67826 -12.42521 -12.20143 -12.12350 -11.91832 -11.88855 -11.62782 -11.46170 -10.64868 -9.84484 -9.82321 -9.24538 -8.73250 -7.93333 -5.37977 -0.17119 0.43558 1.38730 1.41731 1.49822 1.57689 1.97038 2.44565 2.77599 2.86793 3.17002 3.23171 3.62574 3.66909 3.86849 4.14451 4.23209 4.27569 4.38050 4.43996 4.51979 4.52925 4.60089 4.67230 4.72958 4.81335 4.86083 4.95263 5.09503 5.13485 5.30098 5.40616 5.52204 5.54439 5.57748 5.59441 5.97751 6.06067 6.14160 6.31532 6.41705 7.07176 7.78006 8.32092 9.13337 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.005530 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.590728 B = 5062.182409 C = 5420.095607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.271 3.729 3 C -0.054 4.054 4 C -0.076 4.076 5 C -0.116 4.116 6 C -0.080 4.080 7 C -0.102 4.102 8 C -0.047 4.047 9 C 0.082 3.918 10 N -0.525 5.525 11 C 0.054 3.946 12 C 0.144 3.856 13 N -0.615 5.615 14 C -0.267 4.267 15 H 0.064 0.936 16 C -0.050 4.050 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.292 1.292 20 H -0.287 1.287 21 H -0.266 1.266 22 C 0.191 3.809 23 C 0.032 3.968 24 H 0.141 0.859 25 H 0.165 0.835 26 H 0.166 0.834 27 H 0.156 0.844 28 H 0.024 0.976 29 H 0.120 0.880 30 H 0.009 0.991 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.251 0.749 35 H 0.003 0.997 36 H 0.047 0.953 37 H 0.019 0.981 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.732 9.031 12.981 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.042 4.042 3 C -0.058 4.058 4 C -0.097 4.097 5 C -0.134 4.134 6 C -0.098 4.098 7 C -0.121 4.121 8 C -0.050 4.050 9 C -0.044 4.044 10 N -0.250 5.250 11 C -0.075 4.075 12 C 0.019 3.981 13 N -0.339 5.339 14 C -0.397 4.397 15 H 0.082 0.918 16 C -0.245 4.245 17 N -0.579 5.579 18 Si 0.793 3.207 19 H -0.219 1.219 20 H -0.213 1.213 21 H -0.191 1.191 22 C 0.065 3.935 23 C -0.098 4.098 24 H 0.159 0.841 25 H 0.183 0.817 26 H 0.183 0.817 27 H 0.173 0.827 28 H 0.042 0.958 29 H 0.138 0.862 30 H 0.027 0.973 31 H 0.125 0.875 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.021 0.979 36 H 0.065 0.935 37 H 0.038 0.962 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.347 8.807 12.630 20.377 hybrid contribution -1.733 0.304 -0.544 1.842 sum 11.614 9.111 12.086 19.078 Atomic orbital electron populations 1.81283 1.13864 1.09459 1.10152 1.26201 0.93554 0.91862 0.92621 1.16263 0.82824 0.98194 1.08515 1.21393 0.95697 0.95987 0.96590 1.21495 0.92509 1.00247 0.99100 1.21853 1.02177 0.91776 0.94017 1.21282 0.91351 1.00122 0.99314 1.19880 0.95252 0.92393 0.97442 1.21342 0.98114 0.92635 0.92324 1.62124 1.39580 1.12791 1.10465 1.22523 0.93119 0.93744 0.98096 1.21138 0.97079 0.92447 0.87445 1.44398 1.24510 1.28167 1.36817 1.19513 0.92679 1.34516 0.92968 0.91789 1.25774 1.00559 1.02037 0.96173 1.70176 1.29356 1.50656 1.07669 0.85299 0.80197 0.77785 0.77420 1.21908 1.21328 1.19098 1.20637 0.92457 0.87830 0.92587 1.23234 0.96368 0.96012 0.94141 0.84070 0.81742 0.81656 0.82670 0.95756 0.86174 0.97314 0.87518 0.92179 0.95602 0.93991 0.97891 0.93461 0.96248 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.95 17.27 19.00 0.33 -18.62 16 2 C 0.27 9.15 10.86 88.33 0.96 10.11 16 3 C -0.05 -1.39 4.20 -21.36 -0.09 -1.48 16 4 C -0.08 -1.43 9.76 22.54 0.22 -1.21 16 5 C -0.12 -1.46 10.03 22.23 0.22 -1.24 16 6 C -0.08 -0.94 10.04 22.33 0.22 -0.72 16 7 C -0.10 -1.66 9.66 22.23 0.21 -1.45 16 8 C -0.05 -1.10 4.58 -19.60 -0.09 -1.19 16 9 C 0.08 2.20 5.17 85.56 0.44 2.64 16 10 N -0.52 -18.70 4.77 -898.85 -4.29 -22.99 16 11 C 0.05 1.98 5.58 86.38 0.48 2.46 16 12 C 0.14 6.40 6.69 86.35 0.58 6.98 16 13 N -0.61 -33.65 3.03 -697.23 -2.11 -35.76 16 14 C -0.27 -15.80 9.63 84.03 0.81 -14.99 16 15 H 0.06 3.71 7.88 -2.91 -0.02 3.69 16 16 C -0.05 -2.97 4.93 84.86 0.42 -2.55 16 17 N -0.93 -57.98 11.16 21.65 0.24 -57.74 16 18 Si 0.97 47.73 29.59 68.60 2.03 49.76 16 19 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 C 0.19 10.18 5.45 86.50 0.47 10.65 16 23 C 0.03 1.36 3.86 86.54 0.33 1.70 16 24 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 25 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 26 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 27 H 0.16 1.84 8.03 -2.91 -0.02 1.81 16 28 H 0.02 0.72 7.42 -2.38 -0.02 0.70 16 29 H 0.12 2.39 8.00 -2.39 -0.02 2.37 16 30 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.11 2.99 8.11 -2.38 -0.02 2.97 16 32 H 0.06 2.56 7.95 -2.39 -0.02 2.54 16 33 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.05 2.85 6.12 -2.39 -0.01 2.84 16 37 H 0.02 0.92 5.21 -2.39 -0.01 0.90 16 38 H 0.08 3.22 4.95 -2.38 -0.01 3.21 16 Total: -1.00 -76.04 308.16 2.45 -73.58 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: 1.06 Total: 2.04 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.20 Total: 9.72 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -5.83 Total: -135.11 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -76.04 2.45 -73.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103882396.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.667 kcal (2) G-P(sol) polarization free energy of solvation -76.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds