Wall clock time and date at job start Mon Mar 30 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37674 * 119.95985 * 2 1 4 4 C 1.39791 * 119.92072 * 180.02562 * 3 2 1 5 5 C 1.43200 * 120.07495 * 180.02562 * 4 3 2 6 6 N 4.79924 * 134.66747 * 0.02562 * 2 1 3 7 7 C 1.39826 * 119.84814 * 0.02562 * 4 3 2 8 8 C 1.37630 * 119.92921 * 359.97438 * 7 4 3 9 9 C 1.39152 * 119.96079 * 179.72982 * 2 1 3 10 10 N 1.39189 * 119.92505 * 359.97438 * 9 2 1 11 11 C 1.46903 * 110.99801 * 244.30259 * 10 9 2 12 12 C 1.53244 * 109.33889 * 172.74827 * 11 10 9 13 13 N 1.47079 * 108.52075 * 53.82829 * 12 11 10 14 14 C 1.36936 * 120.87808 * 128.83640 * 13 12 11 15 15 H 1.07997 * 120.00205 * 206.56534 * 14 13 12 16 16 C 1.38815 * 119.99873 * 26.57144 * 14 13 12 17 17 N 1.31614 * 120.00189 * 17.00573 * 16 14 13 18 18 Si 1.86804 * 119.99742 * 197.01488 * 16 14 13 19 19 H 1.48504 * 109.47326 * 59.99327 * 18 16 14 20 20 H 1.48500 * 109.47095 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46836 * 299.99642 * 18 16 14 22 22 C 1.47073 * 118.23855 * 308.81903 * 13 12 11 23 23 C 1.46898 * 110.99849 * 120.00399 * 10 9 2 24 24 H 1.08999 * 109.47105 * 90.00045 * 1 2 3 25 25 H 1.08999 * 109.46888 * 330.00126 * 1 2 3 26 26 H 1.09001 * 109.46736 * 210.00236 * 1 2 3 27 27 H 1.07994 * 120.03905 * 0.02562 * 3 2 1 28 28 H 1.08004 * 120.03683 * 179.97438 * 7 4 3 29 29 H 1.07996 * 119.96394 * 179.97438 * 8 7 4 30 30 H 1.09001 * 109.49416 * 292.70711 * 11 10 9 31 31 H 1.09007 * 109.49293 * 52.78741 * 11 10 9 32 32 H 1.08998 * 109.62542 * 294.11805 * 12 11 10 33 33 H 1.08998 * 109.62627 * 173.54109 * 12 11 10 34 34 H 0.97003 * 119.99869 * 180.02562 * 17 16 14 35 35 H 1.09006 * 109.62878 * 291.47022 * 22 13 12 36 36 H 1.09001 * 109.63139 * 170.89919 * 22 13 12 37 37 H 1.08998 * 109.49433 * 307.21294 * 23 10 9 38 38 H 1.09000 * 109.49268 * 67.26775 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1946 1.1928 0.0000 4 6 3.5925 1.1918 -0.0005 5 6 4.3110 2.4305 0.0000 6 7 4.8809 3.4132 0.0015 7 6 4.2876 -0.0214 -0.0016 8 6 3.5940 -1.2102 -0.0016 9 6 2.2020 -1.2056 0.0057 10 7 1.5036 -2.4096 0.0119 11 6 1.7544 -3.1572 1.2513 12 6 0.8340 -4.3814 1.3006 13 7 1.0156 -5.1526 0.0615 14 6 1.2710 -6.4973 0.1018 15 1 1.8095 -6.9692 -0.7068 16 6 0.8378 -7.2541 1.1819 17 7 -0.0867 -6.7794 1.9894 18 14 1.5672 -8.9461 1.4893 19 1 3.0318 -8.8227 1.7020 20 1 0.9408 -9.5434 2.6959 21 1 1.3094 -9.8172 0.3145 22 6 0.9151 -4.4414 -1.2219 23 6 1.8323 -3.2148 -1.1719 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6546 2.1280 0.0004 28 1 5.3676 -0.0257 -0.0025 29 1 4.1303 -2.1476 -0.0029 30 1 2.7944 -3.4828 1.2756 31 1 1.5535 -2.5161 2.1098 32 1 -0.2033 -4.0565 1.3811 33 1 1.0942 -5.0008 2.1590 34 1 -0.3892 -7.3081 2.7444 35 1 -0.1145 -4.1223 -1.3840 36 1 1.2287 -5.1005 -2.0314 37 1 1.6879 -2.6157 -2.0709 38 1 2.8713 -3.5393 -1.1141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104072230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:15 Heat of formation + Delta-G solvation = 89.619437 kcal Electronic energy + Delta-G solvation = -20291.789961 eV Core-core repulsion = 17328.118091 eV Total energy + Delta-G solvation = -2963.671870 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.24096 -37.88041 -36.43704 -34.44261 -32.86090 -31.60946 -30.20029 -29.70576 -27.11659 -26.19961 -23.79263 -22.68255 -22.09516 -21.92341 -19.18216 -18.31299 -17.23696 -16.19766 -15.84102 -14.87197 -14.61580 -14.47143 -14.04381 -13.98786 -13.63355 -13.52200 -13.29492 -13.16912 -13.10697 -13.04964 -12.41174 -12.22888 -11.79595 -11.66150 -11.53269 -11.27033 -11.10809 -10.78043 -10.65386 -10.41924 -10.23879 -9.84467 -9.73546 -8.97213 -8.62003 -8.51781 -8.10928 -6.74344 -5.83796 -3.25190 0.65283 1.24874 2.52851 2.80998 3.35290 3.41678 3.42244 3.73695 3.76654 4.11259 4.45841 4.72693 4.77913 5.10300 5.26282 5.30875 5.35554 5.46809 5.58162 5.75596 5.78624 5.84208 5.89471 6.00205 6.05724 6.08365 6.16177 6.20014 6.31463 6.43233 6.52748 6.59332 6.71978 6.84166 7.11581 7.34194 7.47734 7.59181 7.68079 7.75793 8.37385 9.15342 9.78368 10.36128 11.25139 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.035655 B = 0.004107 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.123904 B = 6816.791199 C = 7084.068608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.068 4.068 3 C -0.067 4.067 4 C -0.047 4.047 5 C 0.263 3.737 6 N -0.432 5.432 7 C -0.066 4.066 8 C -0.150 4.150 9 C 0.137 3.863 10 N -0.503 5.503 11 C 0.040 3.960 12 C 0.178 3.822 13 N -0.595 5.595 14 C -0.255 4.255 15 H 0.066 0.934 16 C 0.003 3.997 17 N -0.903 5.903 18 Si 0.903 3.097 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.149 3.851 23 C 0.049 3.951 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.032 0.968 31 H 0.064 0.936 32 H 0.029 0.971 33 H 0.091 0.909 34 H 0.255 0.745 35 H 0.028 0.972 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.442 11.963 -3.550 12.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.069 4.069 3 C -0.088 4.088 4 C -0.050 4.050 5 C -0.052 4.052 6 N -0.108 5.108 7 C -0.087 4.087 8 C -0.170 4.170 9 C 0.042 3.958 10 N -0.225 5.225 11 C -0.087 4.087 12 C 0.052 3.948 13 N -0.318 5.318 14 C -0.384 4.384 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.732 3.268 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.022 3.978 23 C -0.079 4.079 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.724 13.445 -3.416 14.363 hybrid contribution 1.098 -1.444 0.250 1.831 sum 4.822 12.001 -3.166 13.316 Atomic orbital electron populations 1.20673 0.89748 1.03230 1.02606 1.19791 0.97101 0.90722 0.99255 1.20960 0.91545 0.98308 0.98016 1.15988 0.92251 0.86746 1.10019 1.25785 0.93252 0.92885 0.93233 1.81231 1.08776 1.11050 1.09725 1.20962 0.99793 0.90532 0.97444 1.21752 0.95086 0.98336 1.01869 1.19208 0.90006 0.92240 0.94390 1.59571 1.55714 1.02784 1.04431 1.23018 0.99879 0.96810 0.88997 1.20887 0.94862 0.88135 0.90880 1.44113 1.83324 1.04908 0.99482 1.19145 1.29186 0.83568 1.06534 0.91621 1.25018 0.96812 0.97788 0.99941 1.70005 1.28528 1.38180 1.17996 0.86370 0.78840 0.84082 0.77464 1.21084 1.21600 1.20884 1.20982 0.96002 0.90830 0.89967 1.22716 0.98913 0.95514 0.90727 0.91189 0.92302 0.89481 0.85064 0.85441 0.85113 0.94944 0.91775 0.95332 0.89072 0.93494 0.95448 0.92340 0.91704 0.94694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.76 36.01 0.35 -0.79 16 2 C -0.07 -0.79 5.89 -104.49 -0.62 -1.40 16 3 C -0.07 -0.69 9.39 -39.21 -0.37 -1.06 16 4 C -0.05 -0.50 5.74 -106.80 -0.61 -1.11 16 5 C 0.26 3.10 15.33 -22.47 -0.34 2.76 16 6 N -0.43 -5.94 18.54 41.84 0.78 -5.17 16 7 C -0.07 -0.69 9.75 -39.21 -0.38 -1.08 16 8 C -0.15 -1.82 8.69 -39.44 -0.34 -2.16 16 9 C 0.14 1.83 4.64 -83.82 -0.39 1.44 16 10 N -0.50 -7.93 3.51 -170.80 -0.60 -8.53 16 11 C 0.04 0.71 5.30 -3.70 -0.02 0.69 16 12 C 0.18 4.00 5.42 -3.60 -0.02 3.98 16 13 N -0.59 -14.14 3.04 -172.01 -0.52 -14.66 16 14 C -0.25 -6.70 9.63 -15.06 -0.15 -6.85 16 15 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 16 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 17 N -0.90 -25.24 11.15 55.49 0.62 -24.63 16 18 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.15 2.92 6.69 -3.61 -0.02 2.90 16 23 C 0.05 0.79 5.23 -3.70 -0.02 0.77 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 26 H 0.09 1.12 7.44 -51.93 -0.39 0.73 16 27 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.13 1.60 7.14 -52.49 -0.37 1.22 16 30 H 0.03 0.59 7.61 -51.93 -0.40 0.19 16 31 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 2.30 6.12 -51.93 -0.32 1.98 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 1.11 7.95 -51.93 -0.41 0.70 16 37 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.03 0.57 7.35 -51.93 -0.38 0.19 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -28.49 318.15 -8.17 -36.66 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -5.19 Total: -2.53 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -3.02 Total: -1.90 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.27 Total: -52.98 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.49 -8.17 -36.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104072230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.281 kcal (2) G-P(sol) polarization free energy of solvation -28.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds