Wall clock time and date at job start Mon Mar 30 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37674 * 119.95985 * 2 1 4 4 C 1.39791 * 119.92072 * 180.02562 * 3 2 1 5 5 C 1.43200 * 120.07495 * 180.02562 * 4 3 2 6 6 N 4.79924 * 134.66747 * 0.02562 * 2 1 3 7 7 C 1.39826 * 119.84814 * 0.02562 * 4 3 2 8 8 C 1.37630 * 119.92921 * 359.97438 * 7 4 3 9 9 C 1.39152 * 119.96079 * 179.72982 * 2 1 3 10 10 N 1.39189 * 119.92505 * 359.97438 * 9 2 1 11 11 C 1.46903 * 110.99801 * 244.30259 * 10 9 2 12 12 C 1.53244 * 109.33889 * 172.74827 * 11 10 9 13 13 N 1.47079 * 108.52075 * 53.82829 * 12 11 10 14 14 C 1.36936 * 120.87808 * 128.83640 * 13 12 11 15 15 H 1.07997 * 120.00205 * 206.56534 * 14 13 12 16 16 C 1.38815 * 119.99873 * 26.57144 * 14 13 12 17 17 N 1.31614 * 120.00189 * 17.00573 * 16 14 13 18 18 Si 1.86804 * 119.99742 * 197.01488 * 16 14 13 19 19 H 1.48504 * 109.47326 * 59.99327 * 18 16 14 20 20 H 1.48500 * 109.47095 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46836 * 299.99642 * 18 16 14 22 22 C 1.47073 * 118.23855 * 308.81903 * 13 12 11 23 23 C 1.46898 * 110.99849 * 120.00399 * 10 9 2 24 24 H 1.08999 * 109.47105 * 90.00045 * 1 2 3 25 25 H 1.08999 * 109.46888 * 330.00126 * 1 2 3 26 26 H 1.09001 * 109.46736 * 210.00236 * 1 2 3 27 27 H 1.07994 * 120.03905 * 0.02562 * 3 2 1 28 28 H 1.08004 * 120.03683 * 179.97438 * 7 4 3 29 29 H 1.07996 * 119.96394 * 179.97438 * 8 7 4 30 30 H 1.09001 * 109.49416 * 292.70711 * 11 10 9 31 31 H 1.09007 * 109.49293 * 52.78741 * 11 10 9 32 32 H 1.08998 * 109.62542 * 294.11805 * 12 11 10 33 33 H 1.08998 * 109.62627 * 173.54109 * 12 11 10 34 34 H 0.97003 * 119.99869 * 180.02562 * 17 16 14 35 35 H 1.09006 * 109.62878 * 291.47022 * 22 13 12 36 36 H 1.09001 * 109.63139 * 170.89919 * 22 13 12 37 37 H 1.08998 * 109.49433 * 307.21294 * 23 10 9 38 38 H 1.09000 * 109.49268 * 67.26775 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1946 1.1928 0.0000 4 6 3.5925 1.1918 -0.0005 5 6 4.3110 2.4305 0.0000 6 7 4.8809 3.4132 0.0015 7 6 4.2876 -0.0214 -0.0016 8 6 3.5940 -1.2102 -0.0016 9 6 2.2020 -1.2056 0.0057 10 7 1.5036 -2.4096 0.0119 11 6 1.7544 -3.1572 1.2513 12 6 0.8340 -4.3814 1.3006 13 7 1.0156 -5.1526 0.0615 14 6 1.2710 -6.4973 0.1018 15 1 1.8095 -6.9692 -0.7068 16 6 0.8378 -7.2541 1.1819 17 7 -0.0867 -6.7794 1.9894 18 14 1.5672 -8.9461 1.4893 19 1 3.0318 -8.8227 1.7020 20 1 0.9408 -9.5434 2.6959 21 1 1.3094 -9.8172 0.3145 22 6 0.9151 -4.4414 -1.2219 23 6 1.8323 -3.2148 -1.1719 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6546 2.1280 0.0004 28 1 5.3676 -0.0257 -0.0025 29 1 4.1303 -2.1476 -0.0029 30 1 2.7944 -3.4828 1.2756 31 1 1.5535 -2.5161 2.1098 32 1 -0.2033 -4.0565 1.3811 33 1 1.0942 -5.0008 2.1590 34 1 -0.3892 -7.3081 2.7444 35 1 -0.1145 -4.1223 -1.3840 36 1 1.2287 -5.1005 -2.0314 37 1 1.6879 -2.6157 -2.0709 38 1 2.8713 -3.5393 -1.1141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104072230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:15 Heat of formation + Delta-G solvation = 74.910578 kcal Electronic energy + Delta-G solvation = -20292.427785 eV Core-core repulsion = 17328.118091 eV Total energy + Delta-G solvation = -2964.309694 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.28885 -39.14317 -37.55217 -35.98772 -33.79652 -33.29168 -31.69047 -31.01369 -28.39946 -27.41639 -25.31447 -24.23946 -23.40748 -22.84136 -20.75512 -19.23096 -18.83334 -17.63140 -16.84570 -16.68342 -15.91752 -15.46478 -15.38416 -15.28404 -15.08000 -15.00334 -14.54660 -14.23873 -14.11690 -14.06548 -13.74779 -13.29147 -13.15844 -12.99356 -12.74564 -12.58028 -12.53631 -12.33031 -12.15321 -12.03755 -11.95300 -11.63481 -11.42566 -10.56269 -9.84014 -9.53561 -9.38058 -8.66363 -7.85245 -5.29067 -0.27239 0.39471 1.49702 1.51521 1.58190 1.60157 1.87303 2.53211 2.80608 2.84755 2.92762 3.30676 3.70571 3.90389 3.92759 4.20639 4.25851 4.34452 4.44097 4.55841 4.59442 4.67226 4.70347 4.80592 4.90955 4.97496 5.01266 5.03549 5.16609 5.22149 5.30837 5.40106 5.45427 5.63867 5.67172 5.72252 5.81160 6.04977 6.39902 6.41985 6.54922 7.16502 7.87085 8.40420 9.21464 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.035655 B = 0.004107 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.123904 B = 6816.791199 C = 7084.068608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.068 4.068 3 C -0.055 4.055 4 C -0.042 4.042 5 C 0.285 3.715 6 N -0.466 5.466 7 C -0.057 4.057 8 C -0.152 4.152 9 C 0.115 3.885 10 N -0.504 5.504 11 C 0.059 3.941 12 C 0.187 3.813 13 N -0.613 5.613 14 C -0.264 4.264 15 H 0.068 0.932 16 C -0.049 4.049 17 N -0.934 5.934 18 Si 0.965 3.035 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.277 1.277 22 C 0.145 3.855 23 C 0.061 3.939 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.157 0.843 28 H 0.148 0.852 29 H 0.128 0.872 30 H 0.029 0.971 31 H 0.077 0.923 32 H 0.002 0.998 33 H 0.058 0.942 34 H 0.250 0.750 35 H 0.019 0.981 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.555 13.469 -4.355 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.069 4.069 3 C -0.076 4.076 4 C -0.045 4.045 5 C -0.029 4.029 6 N -0.142 5.142 7 C -0.078 4.078 8 C -0.172 4.172 9 C 0.020 3.980 10 N -0.226 5.226 11 C -0.069 4.069 12 C 0.061 3.939 13 N -0.337 5.337 14 C -0.394 4.394 15 H 0.086 0.914 16 C -0.244 4.244 17 N -0.580 5.580 18 Si 0.794 3.206 19 H -0.205 1.205 20 H -0.222 1.222 21 H -0.203 1.203 22 C 0.020 3.980 23 C -0.066 4.066 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.174 0.826 28 H 0.165 0.835 29 H 0.146 0.854 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.020 0.980 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.852 14.978 -4.251 16.308 hybrid contribution 0.729 -1.840 0.445 2.029 sum 5.581 13.138 -3.806 14.773 Atomic orbital electron populations 1.20652 0.89282 1.03096 1.02964 1.19864 0.97481 0.90521 0.99082 1.21150 0.91343 0.98725 0.96364 1.16017 0.92445 0.86266 1.09808 1.25779 0.92436 0.92518 0.92189 1.81270 1.09845 1.12128 1.10934 1.21105 1.00810 0.89754 0.96164 1.21690 0.94499 0.98849 1.02192 1.19224 0.90601 0.91377 0.96805 1.59403 1.56635 1.03314 1.03204 1.22626 0.98104 0.95251 0.90881 1.20614 0.94379 0.89344 0.89554 1.44384 1.83473 1.04660 1.01213 1.19488 1.28506 0.84925 1.06451 0.91413 1.25739 0.97399 1.01221 1.00074 1.70165 1.30005 1.39393 1.18443 0.85377 0.78087 0.80163 0.77008 1.20482 1.22157 1.20257 1.21120 0.96490 0.92138 0.88282 1.22520 0.97652 0.94376 0.92064 0.90573 0.90073 0.91985 0.82585 0.83454 0.85433 0.95234 0.90445 0.98010 0.92382 0.94089 0.96289 0.91966 0.89083 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 9.76 71.24 0.70 -1.30 16 2 C -0.07 -1.41 5.89 -19.78 -0.12 -1.52 16 3 C -0.06 -0.92 9.39 22.51 0.21 -0.71 16 4 C -0.04 -0.75 5.74 -21.27 -0.12 -0.87 16 5 C 0.29 5.88 15.33 88.33 1.35 7.23 16 6 N -0.47 -11.77 18.54 19.00 0.35 -11.41 16 7 C -0.06 -1.02 9.75 22.51 0.22 -0.80 16 8 C -0.15 -3.30 8.69 22.36 0.19 -3.10 16 9 C 0.11 2.82 4.64 38.43 0.18 3.00 16 10 N -0.50 -15.34 3.51 -694.28 -2.44 -17.77 16 11 C 0.06 2.09 5.30 86.38 0.46 2.55 16 12 C 0.19 8.68 5.42 86.35 0.47 9.15 16 13 N -0.61 -29.70 3.04 -698.13 -2.12 -31.82 16 14 C -0.26 -14.07 9.63 84.03 0.81 -13.26 16 15 H 0.07 3.51 7.88 -2.91 -0.02 3.48 16 16 C -0.05 -2.66 4.94 84.86 0.42 -2.24 16 17 N -0.93 -53.99 11.15 21.65 0.24 -53.74 16 18 Si 0.97 43.77 29.59 68.60 2.03 45.80 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 C 0.15 5.69 6.69 86.35 0.58 6.26 16 23 C 0.06 1.90 5.23 86.38 0.45 2.35 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 26 H 0.06 1.54 7.44 -2.39 -0.02 1.52 16 27 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 29 H 0.13 2.86 7.14 -2.91 -0.02 2.84 16 30 H 0.03 1.06 7.61 -2.39 -0.02 1.04 16 31 H 0.08 2.51 8.09 -2.38 -0.02 2.49 16 32 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.06 3.06 6.12 -2.39 -0.01 3.05 16 34 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.06 2.34 7.95 -2.39 -0.02 2.32 16 37 H 0.09 2.36 8.09 -2.39 -0.02 2.34 16 38 H 0.03 1.08 7.35 -2.39 -0.02 1.06 16 Total: -1.00 -62.33 318.15 4.92 -57.41 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.06 Total: 4.81 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 5.80 Total: 6.73 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -3.96 Total: -114.76 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -62.33 4.92 -57.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104072230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.322 kcal (2) G-P(sol) polarization free energy of solvation -62.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds