Wall clock time and date at job start Mon Mar 30 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38578 * 119.78664 * 2 1 4 4 C 1.37791 * 120.34021 * 179.97438 * 3 2 1 5 5 C 1.39721 * 119.92451 * 359.97438 * 4 3 2 6 6 C 1.43206 * 120.20872 * 179.97438 * 5 4 3 7 7 N 4.80148 * 137.07410 * 0.02562 * 3 1 2 8 8 C 1.40357 * 119.58652 * 0.02562 * 5 4 3 9 9 N 1.39035 * 120.17651 * 179.97438 * 8 5 4 10 10 C 1.46897 * 111.00494 * 244.28208 * 9 8 5 11 11 C 1.53238 * 109.33941 * 172.74371 * 10 9 8 12 12 N 1.47078 * 108.52293 * 53.83097 * 11 10 9 13 13 C 1.36935 * 120.88112 * 128.78703 * 12 11 10 14 14 H 1.07996 * 120.00101 * 206.60009 * 13 12 11 15 15 C 1.38814 * 120.00040 * 26.60804 * 13 12 11 16 16 N 1.31627 * 120.00006 * 16.99424 * 15 13 12 17 17 Si 1.86800 * 120.00300 * 196.99851 * 15 13 12 18 18 H 1.48491 * 109.47302 * 89.99475 * 17 15 13 19 19 H 1.48498 * 109.47116 * 210.00168 * 17 15 13 20 20 H 1.48504 * 109.46668 * 329.99609 * 17 15 13 21 21 C 1.47080 * 118.23542 * 308.81622 * 12 11 10 22 22 C 1.46902 * 111.00104 * 119.97695 * 9 8 5 23 23 C 1.38007 * 119.79042 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47319 * 269.98619 * 1 2 3 25 25 H 1.09005 * 109.47402 * 29.98571 * 1 2 3 26 26 H 1.09004 * 109.47158 * 149.98384 * 1 2 3 27 27 H 1.08002 * 119.82856 * 0.02562 * 3 2 1 28 28 H 1.08005 * 120.03548 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.49142 * 292.70372 * 10 9 8 30 30 H 1.09003 * 109.48916 * 52.78326 * 10 9 8 31 31 H 1.09000 * 109.62900 * 294.11581 * 11 10 9 32 32 H 1.09006 * 109.62543 * 173.54131 * 11 10 9 33 33 H 0.97000 * 119.99974 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.62457 * 291.47033 * 21 12 11 35 35 H 1.09001 * 109.62526 * 170.89827 * 21 12 11 36 36 H 1.09005 * 109.49407 * 307.22019 * 22 9 8 37 37 H 1.08997 * 109.48891 * 67.29374 * 22 9 8 38 38 H 1.07997 * 119.96778 * 359.72485 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2027 0.0000 4 6 3.5732 1.2160 0.0005 5 6 4.2819 0.0119 0.0016 6 6 5.7139 0.0186 0.0016 7 7 6.8499 0.0240 -0.0015 8 6 3.5815 -1.2045 0.0016 9 7 4.2743 -2.4099 0.0021 10 6 4.0212 -3.1632 -1.2333 11 6 4.9370 -4.3911 -1.2755 12 7 4.7519 -5.1550 -0.0324 13 6 4.4903 -6.4988 -0.0655 14 1 3.9492 -6.9637 0.7452 15 6 4.9207 -7.2634 -1.1412 16 7 5.8479 -6.7971 -1.9509 17 14 4.1842 -8.9539 -1.4397 18 1 2.9976 -8.8278 -2.3235 19 1 5.1950 -9.8265 -2.0894 20 1 3.7746 -9.5512 -0.1433 21 6 4.8545 -4.4372 1.2472 22 6 3.9421 -3.2076 1.1902 23 6 2.1926 -1.1977 -0.0005 24 1 -0.3634 -0.0002 1.0277 25 1 -0.3634 0.8901 -0.5136 26 1 -0.3634 -0.8899 -0.5141 27 1 1.6491 2.1344 0.0004 28 1 4.1048 2.1562 0.0009 29 1 2.9801 -3.4850 -1.2563 30 1 4.2251 -2.5276 -2.0950 31 1 5.9756 -4.0707 -1.3572 32 1 4.6748 -5.0142 -2.1307 33 1 6.1484 -7.3313 -2.7028 34 1 5.8853 -4.1213 1.4081 35 1 4.5379 -5.0908 2.0601 36 1 4.0885 -2.6041 2.0861 37 1 2.9020 -3.5286 1.1334 38 1 1.6487 -2.1307 0.0035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109444635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:18 Heat of formation + Delta-G solvation = 88.706911 kcal Electronic energy + Delta-G solvation = -20469.869940 eV Core-core repulsion = 17506.158500 eV Total energy + Delta-G solvation = -2963.711440 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.21818 -37.69054 -36.18661 -34.60916 -32.77424 -31.55646 -30.11970 -29.41422 -27.66238 -26.26696 -23.48981 -22.66573 -22.53013 -21.34171 -19.15294 -18.71725 -17.02367 -15.85973 -15.80263 -14.86831 -14.67065 -14.52980 -14.16317 -13.87950 -13.71435 -13.46791 -13.31863 -13.17079 -12.85751 -12.77925 -12.47376 -12.06668 -11.79333 -11.70419 -11.54293 -11.36653 -11.08641 -10.78827 -10.61802 -10.38566 -10.20255 -9.82344 -9.70148 -8.91515 -8.62893 -8.52102 -8.12962 -6.71544 -5.80307 -3.22334 0.77475 1.21074 3.03621 3.06064 3.36410 3.43276 3.44889 3.92616 4.04690 4.12712 4.47984 4.66812 4.75221 5.04810 5.17989 5.31124 5.36804 5.40328 5.42433 5.50334 5.64533 5.76423 5.86208 5.90125 6.03098 6.07000 6.09628 6.19650 6.31086 6.39017 6.46502 6.58453 6.69861 6.87257 7.13776 7.50398 7.62775 7.64803 7.77792 7.85334 8.40105 9.17994 9.81063 10.39557 11.28656 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.023532 B = 0.005094 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.570945 B = 5495.281214 C = 6183.704701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.050 4.050 3 C -0.135 4.135 4 C -0.065 4.065 5 C -0.023 4.023 6 C 0.270 3.730 7 N -0.421 5.421 8 C 0.159 3.841 9 N -0.510 5.510 10 C 0.043 3.957 11 C 0.178 3.822 12 N -0.594 5.594 13 C -0.254 4.254 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.903 3.097 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.148 3.852 22 C 0.051 3.949 23 C -0.153 4.153 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.093 0.907 33 H 0.255 0.745 34 H 0.026 0.974 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.514 15.454 3.544 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.052 4.052 3 C -0.153 4.153 4 C -0.085 4.085 5 C -0.027 4.027 6 C -0.045 4.045 7 N -0.097 5.097 8 C 0.061 3.939 9 N -0.232 5.232 10 C -0.084 4.084 11 C 0.052 3.948 12 N -0.317 5.317 13 C -0.383 4.383 14 H 0.085 0.915 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.733 3.267 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.021 3.979 22 C -0.077 4.077 23 C -0.173 4.173 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.141 15.403 3.419 18.234 hybrid contribution -1.556 -1.107 -0.274 1.929 sum -10.696 14.295 3.145 18.129 Atomic orbital electron populations 1.20873 0.90939 1.03106 1.02628 1.20012 0.96265 0.92791 0.96130 1.20873 0.93477 0.97701 1.03234 1.21049 0.94120 0.96264 0.97115 1.16048 0.84825 0.93344 1.08501 1.25302 0.92331 0.93031 0.93837 1.81171 1.12076 1.07941 1.08481 1.19012 0.90082 0.91085 0.93701 1.59474 1.56133 1.02851 1.04788 1.23003 0.99903 0.96748 0.88769 1.20889 0.94936 0.88153 0.90844 1.44115 1.83145 1.05054 0.99420 1.19202 1.28952 0.83541 1.06620 0.91494 1.25043 0.96804 0.97807 0.99991 1.70034 1.28488 1.38074 1.18101 0.86272 0.78423 0.83929 0.78041 1.21471 1.21737 1.20446 1.20985 0.96039 0.90746 0.90100 1.22716 0.98959 0.95601 0.90421 1.21652 0.94188 0.98489 1.02979 0.90774 0.91263 0.91218 0.85278 0.84995 0.94675 0.91857 0.95445 0.88926 0.93542 0.95572 0.92176 0.91729 0.94428 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.00 36.00 0.36 -0.49 16 2 C -0.05 -0.49 5.88 -104.58 -0.62 -1.11 16 3 C -0.13 -1.19 9.67 -39.62 -0.38 -1.57 16 4 C -0.06 -0.65 9.75 -39.19 -0.38 -1.04 16 5 C -0.02 -0.31 5.76 -106.62 -0.61 -0.93 16 6 C 0.27 4.42 14.81 -22.47 -0.33 4.09 16 7 N -0.42 -7.85 18.54 41.84 0.78 -7.07 16 8 C 0.16 2.34 4.65 -83.56 -0.39 1.95 16 9 N -0.51 -9.12 3.96 -170.57 -0.68 -9.80 16 10 C 0.04 0.83 5.30 -3.70 -0.02 0.81 16 11 C 0.18 4.31 5.42 -3.60 -0.02 4.29 16 12 N -0.59 -14.94 3.04 -172.02 -0.52 -15.46 16 13 C -0.25 -6.91 9.63 -15.06 -0.15 -7.05 16 14 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 15 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 16 N -0.90 -26.30 11.15 55.49 0.62 -25.68 16 17 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.15 3.15 6.69 -3.61 -0.02 3.13 16 22 C 0.05 0.89 5.24 -3.70 -0.02 0.87 16 23 C -0.15 -1.90 8.35 -39.43 -0.33 -2.22 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 26 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 28 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 29 H 0.03 0.66 7.60 -51.93 -0.39 0.27 16 30 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 2.46 6.12 -51.93 -0.32 2.14 16 33 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 1.21 7.95 -51.93 -0.41 0.80 16 36 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 37 H 0.04 0.65 7.38 -51.93 -0.38 0.26 16 38 H 0.13 1.63 7.16 -52.49 -0.38 1.26 16 LS Contribution 318.98 15.07 4.81 4.81 Total: -1.00 -31.08 318.98 -8.25 -39.33 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -5.23 Total: -3.34 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -3.00 Total: 0.70 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.20 Total: -58.01 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.08 -8.25 -39.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109444635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.036 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds