Wall clock time and date at job start Mon Mar 30 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38578 * 119.78664 * 2 1 4 4 C 1.37791 * 120.34021 * 179.97438 * 3 2 1 5 5 C 1.39721 * 119.92451 * 359.97438 * 4 3 2 6 6 C 1.43206 * 120.20872 * 179.97438 * 5 4 3 7 7 N 4.80148 * 137.07410 * 0.02562 * 3 1 2 8 8 C 1.40357 * 119.58652 * 0.02562 * 5 4 3 9 9 N 1.39035 * 120.17651 * 179.97438 * 8 5 4 10 10 C 1.46897 * 111.00494 * 244.28208 * 9 8 5 11 11 C 1.53238 * 109.33941 * 172.74371 * 10 9 8 12 12 N 1.47078 * 108.52293 * 53.83097 * 11 10 9 13 13 C 1.36935 * 120.88112 * 128.78703 * 12 11 10 14 14 H 1.07996 * 120.00101 * 206.60009 * 13 12 11 15 15 C 1.38814 * 120.00040 * 26.60804 * 13 12 11 16 16 N 1.31627 * 120.00006 * 16.99424 * 15 13 12 17 17 Si 1.86800 * 120.00300 * 196.99851 * 15 13 12 18 18 H 1.48491 * 109.47302 * 89.99475 * 17 15 13 19 19 H 1.48498 * 109.47116 * 210.00168 * 17 15 13 20 20 H 1.48504 * 109.46668 * 329.99609 * 17 15 13 21 21 C 1.47080 * 118.23542 * 308.81622 * 12 11 10 22 22 C 1.46902 * 111.00104 * 119.97695 * 9 8 5 23 23 C 1.38007 * 119.79042 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47319 * 269.98619 * 1 2 3 25 25 H 1.09005 * 109.47402 * 29.98571 * 1 2 3 26 26 H 1.09004 * 109.47158 * 149.98384 * 1 2 3 27 27 H 1.08002 * 119.82856 * 0.02562 * 3 2 1 28 28 H 1.08005 * 120.03548 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.49142 * 292.70372 * 10 9 8 30 30 H 1.09003 * 109.48916 * 52.78326 * 10 9 8 31 31 H 1.09000 * 109.62900 * 294.11581 * 11 10 9 32 32 H 1.09006 * 109.62543 * 173.54131 * 11 10 9 33 33 H 0.97000 * 119.99974 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.62457 * 291.47033 * 21 12 11 35 35 H 1.09001 * 109.62526 * 170.89827 * 21 12 11 36 36 H 1.09005 * 109.49407 * 307.22019 * 22 9 8 37 37 H 1.08997 * 109.48891 * 67.29374 * 22 9 8 38 38 H 1.07997 * 119.96778 * 359.72485 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2027 0.0000 4 6 3.5732 1.2160 0.0005 5 6 4.2819 0.0119 0.0016 6 6 5.7139 0.0186 0.0016 7 7 6.8499 0.0240 -0.0015 8 6 3.5815 -1.2045 0.0016 9 7 4.2743 -2.4099 0.0021 10 6 4.0212 -3.1632 -1.2333 11 6 4.9370 -4.3911 -1.2755 12 7 4.7519 -5.1550 -0.0324 13 6 4.4903 -6.4988 -0.0655 14 1 3.9492 -6.9637 0.7452 15 6 4.9207 -7.2634 -1.1412 16 7 5.8479 -6.7971 -1.9509 17 14 4.1842 -8.9539 -1.4397 18 1 2.9976 -8.8278 -2.3235 19 1 5.1950 -9.8265 -2.0894 20 1 3.7746 -9.5512 -0.1433 21 6 4.8545 -4.4372 1.2472 22 6 3.9421 -3.2076 1.1902 23 6 2.1926 -1.1977 -0.0005 24 1 -0.3634 -0.0002 1.0277 25 1 -0.3634 0.8901 -0.5136 26 1 -0.3634 -0.8899 -0.5141 27 1 1.6491 2.1344 0.0004 28 1 4.1048 2.1562 0.0009 29 1 2.9801 -3.4850 -1.2563 30 1 4.2251 -2.5276 -2.0950 31 1 5.9756 -4.0707 -1.3572 32 1 4.6748 -5.0142 -2.1307 33 1 6.1484 -7.3313 -2.7028 34 1 5.8853 -4.1213 1.4081 35 1 4.5379 -5.0908 2.0601 36 1 4.0885 -2.6041 2.0861 37 1 2.9020 -3.5286 1.1334 38 1 1.6487 -2.1307 0.0035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109444635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:18 Heat of formation + Delta-G solvation = 70.507972 kcal Electronic energy + Delta-G solvation = -20470.659106 eV Core-core repulsion = 17506.158500 eV Total energy + Delta-G solvation = -2964.500605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32097 -39.07465 -37.43738 -36.28125 -33.79996 -33.26077 -31.78327 -30.74732 -28.41980 -27.98079 -25.15554 -24.35927 -23.48944 -22.54975 -20.80415 -19.75833 -18.82055 -17.31739 -16.81205 -16.64471 -16.03866 -15.62344 -15.38918 -15.30404 -15.24939 -14.88307 -14.82306 -14.25243 -14.15671 -13.88627 -13.79064 -13.31575 -13.11165 -12.88068 -12.72939 -12.67579 -12.61669 -12.33309 -12.23295 -12.06559 -12.02542 -11.72665 -11.49184 -10.63490 -9.80519 -9.56334 -9.49214 -8.75619 -7.90306 -5.36368 -0.17495 0.33907 1.46947 1.47605 1.57306 1.79204 2.02650 2.48896 2.75155 2.88570 3.05594 3.25445 3.59941 3.93615 3.97790 4.10997 4.23976 4.32634 4.42807 4.44703 4.49412 4.57451 4.60806 4.78916 4.81990 4.90864 4.94692 4.95474 5.07379 5.25574 5.27814 5.33517 5.41498 5.58101 5.59840 5.62262 5.86491 5.94992 6.32955 6.41350 6.63100 7.08870 7.78366 8.33912 9.17225 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.023532 B = 0.005094 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.570945 B = 5495.281214 C = 6183.704701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.039 4.039 3 C -0.118 4.118 4 C -0.051 4.051 5 C -0.045 4.045 6 C 0.288 3.712 7 N -0.478 5.478 8 C 0.134 3.866 9 N -0.525 5.525 10 C 0.063 3.937 11 C 0.187 3.813 12 N -0.610 5.610 13 C -0.264 4.264 14 H 0.073 0.927 15 C -0.052 4.052 16 N -0.940 5.940 17 Si 0.972 3.028 18 H -0.282 1.282 19 H -0.298 1.298 20 H -0.267 1.267 21 C 0.144 3.856 22 C 0.065 3.935 23 C -0.159 4.159 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.171 0.829 28 H 0.159 0.841 29 H 0.042 0.958 30 H 0.071 0.929 31 H -0.013 1.013 32 H 0.064 0.936 33 H 0.250 0.750 34 H 0.004 0.996 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.912 17.547 4.337 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.041 4.041 3 C -0.136 4.136 4 C -0.071 4.071 5 C -0.049 4.049 6 C -0.026 4.026 7 N -0.154 5.154 8 C 0.037 3.963 9 N -0.247 5.247 10 C -0.064 4.064 11 C 0.061 3.939 12 N -0.334 5.334 13 C -0.393 4.393 14 H 0.091 0.909 15 C -0.247 4.247 16 N -0.586 5.586 17 Si 0.800 3.200 18 H -0.208 1.208 19 H -0.224 1.224 20 H -0.191 1.191 21 C 0.018 3.982 22 C -0.063 4.063 23 C -0.179 4.179 24 H 0.106 0.894 25 H 0.110 0.890 26 H 0.085 0.915 27 H 0.188 0.812 28 H 0.176 0.824 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.005 0.995 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.022 0.978 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.561 17.524 4.243 21.975 hybrid contribution -0.564 -1.648 -0.467 1.803 sum -13.126 15.876 3.776 20.943 Atomic orbital electron populations 1.20959 0.88667 1.04158 1.03746 1.20375 0.97845 0.92082 0.93788 1.21341 0.92841 0.98929 1.00457 1.21378 0.94856 0.95760 0.95151 1.16234 0.83303 0.94509 1.10856 1.25873 0.92984 0.91508 0.92250 1.81174 1.13743 1.09659 1.10861 1.18946 0.91055 0.89551 0.96739 1.59252 1.57778 1.03869 1.03816 1.22584 0.98565 0.94900 0.90379 1.20594 0.93751 0.89667 0.89885 1.44380 1.83212 1.04988 1.00840 1.19585 1.28406 0.84646 1.06707 0.90903 1.25860 0.97254 1.01647 0.99953 1.70218 1.30157 1.39543 1.18661 0.85189 0.77302 0.79298 0.78187 1.20849 1.22441 1.19108 1.21122 0.95877 0.92389 0.88806 1.22496 0.98099 0.94180 0.91483 1.21603 0.92957 0.99632 1.03689 0.89447 0.88995 0.91501 0.81172 0.82384 0.93995 0.91036 0.99527 0.91816 0.94075 0.97822 0.91232 0.89505 0.93519 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.00 71.23 0.71 -0.41 16 2 C -0.04 -0.60 5.88 -19.84 -0.12 -0.71 16 3 C -0.12 -1.44 9.67 22.25 0.22 -1.22 16 4 C -0.05 -0.83 9.75 22.52 0.22 -0.61 16 5 C -0.04 -1.14 5.76 -21.16 -0.12 -1.26 16 6 C 0.29 9.42 14.81 88.33 1.31 10.73 16 7 N -0.48 -18.32 18.54 19.01 0.35 -17.96 16 8 C 0.13 3.75 4.65 38.67 0.18 3.93 16 9 N -0.53 -18.77 3.96 -693.57 -2.75 -21.52 16 10 C 0.06 2.49 5.30 86.38 0.46 2.95 16 11 C 0.19 9.56 5.42 86.35 0.47 10.02 16 12 N -0.61 -31.72 3.04 -698.14 -2.12 -33.84 16 13 C -0.26 -14.64 9.63 84.03 0.81 -13.83 16 14 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 15 C -0.05 -2.94 4.94 84.86 0.42 -2.52 16 16 N -0.94 -57.12 11.15 21.65 0.24 -56.88 16 17 Si 0.97 45.02 29.59 68.60 2.03 47.05 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 C 0.14 6.26 6.69 86.35 0.58 6.84 16 22 C 0.06 2.25 5.24 86.38 0.45 2.70 16 23 C -0.16 -3.52 8.35 22.37 0.19 -3.33 16 24 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.09 0.50 8.08 -2.38 -0.02 0.49 16 26 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 27 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16 28 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.04 1.59 7.60 -2.39 -0.02 1.57 16 30 H 0.07 2.66 8.09 -2.39 -0.02 2.64 16 31 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H 0.06 3.58 6.12 -2.38 -0.01 3.57 16 33 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.07 2.83 7.95 -2.39 -0.02 2.81 16 36 H 0.09 2.63 8.09 -2.38 -0.02 2.61 16 37 H 0.05 1.54 7.38 -2.39 -0.02 1.52 16 38 H 0.13 2.88 7.16 -2.91 -0.02 2.85 16 Total: -1.00 -71.64 318.98 4.58 -67.06 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: 1.05 Total: 2.83 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.77 Total: 13.27 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -4.28 Total: -130.21 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -71.64 4.58 -67.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109444635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.567 kcal (2) G-P(sol) polarization free energy of solvation -71.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds