Wall clock time and date at job start Mon Mar 30 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39732 * 120.20968 * 133.06324 * 3 2 1 5 5 C 1.37793 * 119.92085 * 179.97438 * 4 3 2 6 6 C 1.38571 * 120.34530 * 0.02562 * 5 4 3 7 7 C 1.38011 * 120.42264 * 359.97438 * 6 5 4 8 8 C 1.38889 * 120.07065 * 359.72783 * 7 6 5 9 9 N 1.39028 * 120.17439 * 180.28010 * 8 7 6 10 10 C 1.46506 * 120.00001 * 0.27321 * 9 8 7 11 11 C 1.53033 * 109.46074 * 275.06953 * 10 9 8 12 12 C 1.53197 * 109.31655 * 178.61158 * 11 10 9 13 13 N 1.46925 * 108.77095 * 54.63454 * 12 11 10 14 14 C 1.36939 * 120.63217 * 126.37025 * 13 12 11 15 15 H 1.08002 * 119.99684 * 331.86549 * 14 13 12 16 16 C 1.38807 * 119.99909 * 151.85843 * 14 13 12 17 17 N 1.31618 * 120.00627 * 343.06740 * 16 14 13 18 18 Si 1.86802 * 119.99809 * 163.06981 * 16 14 13 19 19 H 1.48510 * 109.47104 * 90.00169 * 18 16 14 20 20 H 1.48499 * 109.47231 * 209.99739 * 18 16 14 21 21 H 1.48500 * 109.47126 * 330.00440 * 18 16 14 22 22 C 1.46932 * 118.73952 * 306.39438 * 13 12 11 23 23 C 1.53042 * 109.46190 * 154.99950 * 10 9 8 24 24 H 1.08001 * 120.03577 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.82525 * 179.97438 * 5 4 3 26 26 H 1.08002 * 119.78967 * 179.97438 * 6 5 4 27 27 H 1.08004 * 119.96618 * 180.02562 * 7 6 5 28 28 H 0.96996 * 120.00228 * 180.27333 * 9 8 7 29 29 H 1.09008 * 109.45740 * 35.02990 * 10 9 8 30 30 H 1.08995 * 109.49958 * 298.56311 * 11 10 9 31 31 H 1.09001 * 109.50051 * 58.66185 * 11 10 9 32 32 H 1.09001 * 109.58641 * 294.85171 * 12 11 10 33 33 H 1.08997 * 109.70436 * 174.49319 * 12 11 10 34 34 H 0.96991 * 120.00405 * 179.97438 * 17 16 14 35 35 H 1.09006 * 109.58313 * 293.81748 * 22 13 12 36 36 H 1.08997 * 109.70223 * 173.47080 * 22 13 12 37 37 H 1.09001 * 109.49263 * 301.33699 * 23 10 9 38 38 H 1.08996 * 109.49529 * 61.43315 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2706 0.8255 -0.8822 5 6 4.6486 0.8217 -0.8768 6 6 5.3430 0.0031 -0.0005 7 6 4.6633 -0.8172 0.8769 8 6 3.2745 -0.8228 0.8905 9 7 2.5876 -1.6440 1.7775 10 6 3.3289 -2.5021 2.7052 11 6 3.6974 -3.8117 2.0045 12 6 4.5021 -4.6919 2.9661 13 7 3.7313 -4.8663 4.2047 14 6 3.4667 -6.1187 4.6914 15 1 3.3974 -6.9575 4.0146 16 6 3.2879 -6.3100 6.0545 17 7 3.6906 -5.3913 6.9066 18 14 2.4755 -7.8717 6.6798 19 1 3.5130 -8.9062 6.9228 20 1 1.7580 -7.5831 7.9474 21 1 1.5101 -8.3674 5.6661 22 6 3.2491 -3.6715 4.9110 23 6 2.4586 -2.8029 3.9276 24 1 2.7344 1.4651 -1.5675 25 1 5.1901 1.4596 -1.5596 26 1 6.4230 0.0070 -0.0042 27 1 5.2120 -1.4520 1.5570 28 1 1.6177 -1.6488 1.7822 29 1 4.2383 -1.9923 3.0235 30 1 2.7879 -4.3341 1.7080 31 1 4.2977 -3.5952 1.1208 32 1 5.4535 -4.2107 3.1925 33 1 4.6842 -5.6645 2.5090 34 1 3.5652 -5.5249 7.8591 35 1 4.0985 -3.1071 5.2961 36 1 2.6032 -3.9686 5.7371 37 1 2.1772 -1.8682 4.4127 38 1 1.5607 -3.3347 3.6129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110824947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:14 Heat of formation + Delta-G solvation = 72.996862 kcal Electronic energy + Delta-G solvation = -20119.552410 eV Core-core repulsion = 17155.159731 eV Total energy + Delta-G solvation = -2964.392679 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.93886 -37.85719 -36.34929 -35.16704 -32.54457 -31.32419 -30.62724 -29.74729 -28.34437 -25.01447 -23.95586 -22.64833 -22.23864 -21.06045 -19.62346 -18.69846 -17.15436 -16.78578 -16.10339 -15.00003 -14.75681 -14.40763 -14.25835 -14.25352 -13.74347 -13.64369 -13.26326 -13.11982 -12.98351 -12.80922 -12.36947 -12.35660 -11.69052 -11.59526 -11.37257 -11.15726 -10.87184 -10.77739 -10.72428 -10.41856 -10.21444 -9.95529 -9.67305 -9.61671 -9.03170 -8.54097 -7.47567 -6.76430 -5.86348 -3.28807 0.84871 1.50239 2.66606 2.98439 3.32933 3.38961 3.41346 3.43648 3.90789 3.96917 4.44350 4.73751 4.91613 5.15143 5.24149 5.28872 5.35351 5.39883 5.44950 5.48964 5.66449 5.79958 5.94854 6.07544 6.16967 6.21364 6.35313 6.37221 6.40687 6.45936 6.52693 6.68319 6.71935 6.86539 7.20342 7.27556 7.50554 7.55104 7.65265 7.73832 8.37681 9.13772 9.76845 10.32683 11.22651 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.031692 B = 0.004103 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.298456 B = 6823.239055 C = 7290.290202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.263 3.737 3 C -0.131 4.131 4 C -0.022 4.022 5 C -0.193 4.193 6 C -0.039 4.039 7 C -0.201 4.201 8 C 0.277 3.723 9 N -0.726 5.726 10 C 0.151 3.849 11 C -0.146 4.146 12 C 0.147 3.853 13 N -0.592 5.592 14 C -0.255 4.255 15 H 0.066 0.934 16 C 0.004 3.996 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.286 1.286 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.175 3.825 23 C -0.148 4.148 24 H 0.126 0.874 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.135 0.865 28 H 0.397 0.603 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.255 0.745 35 H 0.022 0.978 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.475 11.318 -12.648 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.051 4.051 3 C -0.141 4.141 4 C -0.043 4.043 5 C -0.213 4.213 6 C -0.059 4.059 7 C -0.223 4.223 8 C 0.165 3.835 9 N -0.349 5.349 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.020 3.980 13 N -0.315 5.315 14 C -0.385 4.385 15 H 0.083 0.917 16 C -0.194 4.194 17 N -0.547 5.547 18 Si 0.731 3.269 19 H -0.213 1.213 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.049 3.951 23 C -0.188 4.188 24 H 0.144 0.856 25 H 0.143 0.857 26 H 0.144 0.856 27 H 0.153 0.847 28 H 0.232 0.768 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.807 11.139 -12.278 16.676 hybrid contribution -0.395 -0.766 0.384 0.944 sum 1.412 10.373 -11.894 15.845 Atomic orbital electron populations 1.81252 1.12064 1.09297 1.08974 1.25666 0.92630 0.93365 0.93447 1.15517 0.84003 1.08330 1.06210 1.20850 0.94214 0.94562 0.94708 1.20750 0.93414 1.03908 1.03229 1.21127 0.99948 0.92382 0.92400 1.20765 0.91449 1.05528 1.04584 1.17829 0.91719 0.87099 0.86858 1.45353 1.08663 1.43147 1.37707 1.21175 0.95346 0.89870 0.88851 1.22509 1.01264 0.96180 0.98660 1.20881 0.92442 0.97025 0.87640 1.44072 1.60025 1.02739 1.24625 1.19170 1.43101 0.85987 0.90229 0.91660 1.25038 1.00482 0.97742 0.96184 1.70008 1.48004 1.35139 1.01534 0.86316 0.79423 0.82982 0.78170 1.21304 1.21515 1.20475 1.20739 0.95892 0.85718 0.92800 1.22541 0.99616 1.00308 0.96347 0.85637 0.85733 0.85560 0.84696 0.76832 0.90236 0.92044 0.92550 0.96244 0.92430 0.93540 0.96003 0.89003 0.92623 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.76 18.54 41.84 0.78 -5.98 16 2 C 0.26 3.53 14.09 -22.48 -0.32 3.21 16 3 C -0.13 -1.53 5.76 -106.61 -0.61 -2.15 16 4 C -0.02 -0.21 9.75 -39.19 -0.38 -0.59 16 5 C -0.19 -1.59 10.02 -39.62 -0.40 -1.99 16 6 C -0.04 -0.34 10.03 -39.54 -0.40 -0.74 16 7 C -0.20 -2.20 8.80 -39.42 -0.35 -2.55 16 8 C 0.28 3.41 6.64 -83.56 -0.55 2.86 16 9 N -0.73 -9.89 5.15 -51.91 -0.27 -10.16 16 10 C 0.15 2.31 2.10 -67.89 -0.14 2.17 16 11 C -0.15 -2.35 5.57 -26.61 -0.15 -2.50 16 12 C 0.15 2.87 6.52 -3.71 -0.02 2.84 16 13 N -0.59 -14.07 2.99 -172.32 -0.52 -14.59 16 14 C -0.26 -6.79 9.58 -15.06 -0.14 -6.94 16 15 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 16 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 17 N -0.90 -25.41 11.19 55.49 0.62 -24.79 16 18 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.18 3.92 5.30 -3.71 -0.02 3.90 16 23 C -0.15 -2.63 5.55 -26.61 -0.15 -2.78 16 24 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 25 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 26 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 27 H 0.14 1.50 6.09 -52.48 -0.32 1.18 16 28 H 0.40 5.54 7.46 -40.82 -0.30 5.23 16 29 H 0.08 1.20 6.49 -51.92 -0.34 0.86 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 34 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 316.21 15.07 4.77 4.77 Total: -1.00 -28.87 316.21 -8.39 -37.26 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.02 Total: 2.50 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -3.72 Total: -5.21 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.61 Total: -55.52 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.87 -8.39 -37.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.260 kcal (2) G-P(sol) polarization free energy of solvation -28.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds