Wall clock time and date at job start Mon Mar 30 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39732 * 120.20968 * 133.06324 * 3 2 1 5 5 C 1.37793 * 119.92085 * 179.97438 * 4 3 2 6 6 C 1.38571 * 120.34530 * 0.02562 * 5 4 3 7 7 C 1.38011 * 120.42264 * 359.97438 * 6 5 4 8 8 C 1.38889 * 120.07065 * 359.72783 * 7 6 5 9 9 N 1.39028 * 120.17439 * 180.28010 * 8 7 6 10 10 C 1.46506 * 120.00001 * 0.27321 * 9 8 7 11 11 C 1.53033 * 109.46074 * 275.06953 * 10 9 8 12 12 C 1.53197 * 109.31655 * 178.61158 * 11 10 9 13 13 N 1.46925 * 108.77095 * 54.63454 * 12 11 10 14 14 C 1.36939 * 120.63217 * 126.37025 * 13 12 11 15 15 H 1.08002 * 119.99684 * 331.86549 * 14 13 12 16 16 C 1.38807 * 119.99909 * 151.85843 * 14 13 12 17 17 N 1.31618 * 120.00627 * 343.06740 * 16 14 13 18 18 Si 1.86802 * 119.99809 * 163.06981 * 16 14 13 19 19 H 1.48510 * 109.47104 * 90.00169 * 18 16 14 20 20 H 1.48499 * 109.47231 * 209.99739 * 18 16 14 21 21 H 1.48500 * 109.47126 * 330.00440 * 18 16 14 22 22 C 1.46932 * 118.73952 * 306.39438 * 13 12 11 23 23 C 1.53042 * 109.46190 * 154.99950 * 10 9 8 24 24 H 1.08001 * 120.03577 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.82525 * 179.97438 * 5 4 3 26 26 H 1.08002 * 119.78967 * 179.97438 * 6 5 4 27 27 H 1.08004 * 119.96618 * 180.02562 * 7 6 5 28 28 H 0.96996 * 120.00228 * 180.27333 * 9 8 7 29 29 H 1.09008 * 109.45740 * 35.02990 * 10 9 8 30 30 H 1.08995 * 109.49958 * 298.56311 * 11 10 9 31 31 H 1.09001 * 109.50051 * 58.66185 * 11 10 9 32 32 H 1.09001 * 109.58641 * 294.85171 * 12 11 10 33 33 H 1.08997 * 109.70436 * 174.49319 * 12 11 10 34 34 H 0.96991 * 120.00405 * 179.97438 * 17 16 14 35 35 H 1.09006 * 109.58313 * 293.81748 * 22 13 12 36 36 H 1.08997 * 109.70223 * 173.47080 * 22 13 12 37 37 H 1.09001 * 109.49263 * 301.33699 * 23 10 9 38 38 H 1.08996 * 109.49529 * 61.43315 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2706 0.8255 -0.8822 5 6 4.6486 0.8217 -0.8768 6 6 5.3430 0.0031 -0.0005 7 6 4.6633 -0.8172 0.8769 8 6 3.2745 -0.8228 0.8905 9 7 2.5876 -1.6440 1.7775 10 6 3.3289 -2.5021 2.7052 11 6 3.6974 -3.8117 2.0045 12 6 4.5021 -4.6919 2.9661 13 7 3.7313 -4.8663 4.2047 14 6 3.4667 -6.1187 4.6914 15 1 3.3974 -6.9575 4.0146 16 6 3.2879 -6.3100 6.0545 17 7 3.6906 -5.3913 6.9066 18 14 2.4755 -7.8717 6.6798 19 1 3.5130 -8.9062 6.9228 20 1 1.7580 -7.5831 7.9474 21 1 1.5101 -8.3674 5.6661 22 6 3.2491 -3.6715 4.9110 23 6 2.4586 -2.8029 3.9276 24 1 2.7344 1.4651 -1.5675 25 1 5.1901 1.4596 -1.5596 26 1 6.4230 0.0070 -0.0042 27 1 5.2120 -1.4520 1.5570 28 1 1.6177 -1.6488 1.7822 29 1 4.2383 -1.9923 3.0235 30 1 2.7879 -4.3341 1.7080 31 1 4.2977 -3.5952 1.1208 32 1 5.4535 -4.2107 3.1925 33 1 4.6842 -5.6645 2.5090 34 1 3.5652 -5.5249 7.8591 35 1 4.0985 -3.1071 5.2961 36 1 2.6032 -3.9686 5.7371 37 1 2.1772 -1.8682 4.4127 38 1 1.5607 -3.3347 3.6129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110824947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:13 Heat of formation + Delta-G solvation = 57.232527 kcal Electronic energy + Delta-G solvation = -20120.236003 eV Core-core repulsion = 17155.159731 eV Total energy + Delta-G solvation = -2965.076272 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87994 -39.22164 -37.39641 -36.51167 -34.17758 -32.29796 -32.03620 -31.28754 -29.48407 -26.74434 -24.82671 -24.02782 -23.74554 -22.19887 -21.00763 -19.76558 -18.74069 -17.84567 -17.26615 -16.78041 -15.80939 -15.56712 -15.39741 -15.37902 -15.20973 -14.90182 -14.75366 -14.53985 -14.09426 -13.90702 -13.73529 -13.47028 -13.16458 -13.00659 -12.66187 -12.55492 -12.43434 -12.29370 -12.03991 -11.92015 -11.84139 -11.61920 -11.30460 -10.87533 -10.54519 -9.81963 -8.70116 -8.41287 -7.89670 -5.33838 0.03530 0.72785 1.45283 1.47722 1.56485 1.64418 2.05718 2.32059 2.50275 3.04281 3.08282 3.27051 3.66925 3.81191 4.01487 4.03772 4.25062 4.33096 4.44717 4.49671 4.62846 4.65552 4.66491 4.80518 4.92747 4.99765 5.07912 5.10570 5.16887 5.31580 5.33224 5.47805 5.54168 5.63514 5.69702 5.73970 5.95430 6.24760 6.38458 6.53322 6.61563 7.14118 7.85204 8.35606 9.17071 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.031692 B = 0.004103 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.298456 B = 6823.239055 C = 7290.290202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C 0.280 3.720 3 C -0.143 4.143 4 C -0.021 4.021 5 C -0.180 4.180 6 C -0.031 4.031 7 C -0.213 4.213 8 C 0.261 3.739 9 N -0.732 5.732 10 C 0.167 3.833 11 C -0.130 4.130 12 C 0.144 3.856 13 N -0.611 5.611 14 C -0.265 4.265 15 H 0.064 0.936 16 C -0.046 4.046 17 N -0.932 5.932 18 Si 0.962 3.038 19 H -0.283 1.283 20 H -0.293 1.293 21 H -0.274 1.274 22 C 0.182 3.818 23 C -0.135 4.135 24 H 0.146 0.854 25 H 0.157 0.843 26 H 0.155 0.845 27 H 0.133 0.867 28 H 0.393 0.607 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.026 0.974 33 H 0.055 0.945 34 H 0.250 0.750 35 H 0.007 0.993 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 12.579 -14.857 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.161 5.161 2 C -0.033 4.033 3 C -0.153 4.153 4 C -0.042 4.042 5 C -0.200 4.200 6 C -0.050 4.050 7 C -0.235 4.235 8 C 0.151 3.849 9 N -0.356 5.356 10 C 0.062 3.938 11 C -0.170 4.170 12 C 0.018 3.982 13 N -0.334 5.334 14 C -0.395 4.395 15 H 0.082 0.918 16 C -0.242 4.242 17 N -0.578 5.578 18 Si 0.790 3.210 19 H -0.210 1.210 20 H -0.219 1.219 21 H -0.199 1.199 22 C 0.055 3.945 23 C -0.175 4.175 24 H 0.164 0.836 25 H 0.175 0.825 26 H 0.173 0.827 27 H 0.151 0.849 28 H 0.227 0.773 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.094 12.427 -14.541 19.376 hybrid contribution -0.664 -1.072 0.961 1.586 sum 2.430 11.355 -13.580 17.868 Atomic orbital electron populations 1.81260 1.13354 1.10922 1.10571 1.25998 0.92955 0.92133 0.92210 1.15691 0.82994 1.09359 1.07212 1.21170 0.94945 0.93914 0.94131 1.21162 0.92958 1.03148 1.02718 1.21508 1.01462 0.90964 0.91062 1.20891 0.90822 1.06384 1.05399 1.17987 0.92337 0.87477 0.87104 1.45062 1.08280 1.43867 1.38363 1.20816 0.95012 0.89948 0.87987 1.22317 1.00415 0.95708 0.98604 1.21030 0.92805 0.97848 0.86533 1.44320 1.61107 1.02206 1.25801 1.19478 1.42358 0.87196 0.90475 0.91791 1.25720 1.01474 1.00541 0.96443 1.70147 1.49445 1.36847 1.01354 0.85366 0.78463 0.79837 0.77315 1.20970 1.21913 1.19904 1.20504 0.95069 0.85876 0.93003 1.22282 0.98829 0.99718 0.96650 0.83605 0.82519 0.82745 0.84940 0.77253 0.89503 0.93431 0.89872 0.95571 0.92686 0.94057 0.97470 0.92680 0.91259 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.79 18.54 19.00 0.35 -14.44 16 2 C 0.28 7.25 14.09 88.33 1.24 8.50 16 3 C -0.14 -3.04 5.76 -21.16 -0.12 -3.16 16 4 C -0.02 -0.31 9.75 22.53 0.22 -0.09 16 5 C -0.18 -2.10 10.02 22.24 0.22 -1.88 16 6 C -0.03 -0.41 10.03 22.30 0.22 -0.18 16 7 C -0.21 -4.03 8.80 22.37 0.20 -3.83 16 8 C 0.26 5.89 6.64 38.67 0.26 6.14 16 9 N -0.73 -19.11 5.15 -318.14 -1.64 -20.75 16 10 C 0.17 4.94 2.10 45.02 0.09 5.03 16 11 C -0.13 -4.04 5.57 30.67 0.17 -3.87 16 12 C 0.14 5.54 6.52 86.36 0.56 6.10 16 13 N -0.61 -29.53 2.99 -699.09 -2.09 -31.62 16 14 C -0.26 -14.33 9.58 84.03 0.81 -13.53 16 15 H 0.06 3.40 7.89 -2.91 -0.02 3.37 16 16 C -0.05 -2.54 4.92 84.86 0.42 -2.12 16 17 N -0.93 -54.04 11.19 21.65 0.24 -53.80 16 18 Si 0.96 44.47 29.59 68.60 2.03 46.49 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.18 8.39 5.30 86.36 0.46 8.85 16 23 C -0.14 -4.83 5.55 30.67 0.17 -4.66 16 24 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 25 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 26 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 27 H 0.13 2.57 6.09 -2.91 -0.02 2.55 16 28 H 0.39 10.81 7.46 -92.71 -0.69 10.12 16 29 H 0.09 2.48 6.49 -2.38 -0.02 2.46 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 2.16 7.67 -2.39 -0.02 2.14 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 34 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 35 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 36 H 0.05 2.94 6.06 -2.39 -0.01 2.92 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -64.02 316.21 4.20 -59.82 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.38 Total: 12.99 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 4.92 Total: 1.30 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -3.14 Total: -120.61 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -64.02 4.20 -59.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.053 kcal (2) G-P(sol) polarization free energy of solvation -64.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds