Wall clock time and date at job start Mon Mar 30 2020 05:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30581 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48501 * 109.46846 * 274.97625 * 3 2 1 5 5 H 1.48496 * 109.47463 * 34.97819 * 3 2 1 6 6 H 1.48495 * 109.47081 * 154.98356 * 3 2 1 7 7 C 1.40352 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00065 * 186.03748 * 7 2 1 9 9 C 1.40183 * 119.99843 * 6.03070 * 7 2 1 10 10 N 1.32469 * 125.30914 * 354.03245 * 9 7 2 11 11 C 1.33970 * 109.78431 * 180.02562 * 10 9 7 12 12 C 1.40531 * 133.19694 * 180.02562 * 11 10 9 13 13 C 1.36357 * 119.84874 * 179.24237 * 12 11 10 14 14 C 1.39045 * 120.75874 * 0.67768 * 13 12 11 15 15 C 1.37963 * 120.57057 * 359.55701 * 14 13 12 16 16 C 1.38724 * 119.76618 * 0.02562 * 15 14 13 17 17 N 1.37859 * 125.30317 * 174.05958 * 9 7 2 18 18 C 1.46493 * 126.53671 * 359.95277 * 17 9 7 19 19 C 1.52996 * 109.46968 * 90.02740 * 18 17 9 20 20 H 1.09003 * 110.37122 * 307.34797 * 19 18 17 21 21 C 1.54381 * 110.41315 * 184.99840 * 19 18 17 22 22 C 1.54258 * 105.06508 * 217.36938 * 21 19 18 23 23 C 1.54387 * 105.05762 * 0.02562 * 22 21 19 24 24 N 1.48555 * 104.59313 * 23.84952 * 23 22 21 25 25 H 0.97003 * 120.00355 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.07815 * 359.97438 * 12 11 10 27 27 H 1.08002 * 119.62354 * 180.25365 * 13 12 11 28 28 H 1.07997 * 119.71670 * 179.58614 * 14 13 12 29 29 H 1.08000 * 120.11449 * 180.02562 * 15 14 13 30 30 H 1.09009 * 109.47282 * 330.02832 * 18 17 9 31 31 H 1.09002 * 109.46890 * 210.02851 * 18 17 9 32 32 H 1.09005 * 110.32113 * 336.26726 * 21 19 18 33 33 H 1.09002 * 110.32847 * 98.37201 * 21 19 18 34 34 H 1.08999 * 110.32580 * 118.89263 * 22 21 19 35 35 H 1.09000 * 110.32566 * 241.00121 * 22 21 19 36 36 H 1.08995 * 110.40787 * 142.63141 * 23 22 21 37 37 H 1.09004 * 110.40445 * 264.95257 * 23 22 21 38 38 H 1.00905 * 111.00088 * 200.95903 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 2.3821 2.1071 -1.3948 5 1 1.4939 2.6200 0.8026 6 1 3.5860 1.4120 0.5920 7 6 2.0076 -1.2155 0.0005 8 1 3.0830 -1.2180 0.0989 9 6 1.3124 -2.4262 -0.1265 10 7 -0.0060 -2.5542 -0.1408 11 6 -0.3347 -3.8460 -0.2754 12 6 -1.5639 -4.5234 -0.3473 13 6 -1.5842 -5.8778 -0.5038 14 6 -0.4001 -6.6027 -0.5797 15 6 0.8201 -5.9631 -0.5069 16 6 0.8674 -4.5849 -0.3563 17 7 1.8944 -3.6693 -0.2554 18 6 3.3295 -3.9615 -0.2852 19 6 3.8285 -4.2130 1.1391 20 1 3.5424 -3.3887 1.7924 21 6 5.3609 -4.3998 1.1477 22 6 5.6256 -5.4924 2.2040 23 6 4.2307 -5.8742 2.7444 24 7 3.2920 -5.4985 1.6561 25 1 -0.4851 0.8400 -0.0004 26 1 -2.4903 -3.9712 -0.2906 27 1 -2.5309 -6.3942 -0.5627 28 1 -0.4359 -7.6757 -0.6970 29 1 1.7353 -6.5334 -0.5671 30 1 3.8643 -3.1134 -0.7131 31 1 3.5072 -4.8478 -0.8943 32 1 5.7077 -4.7286 0.1679 33 1 5.8542 -3.4700 1.4308 34 1 6.1023 -6.3573 1.7429 35 1 6.2502 -5.0997 3.0065 36 1 4.1786 -6.9454 2.9386 37 1 4.0080 -5.3128 3.6518 38 1 2.3546 -5.3823 2.0111 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110952036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:45 Heat of formation + Delta-G solvation = 63.452881 kcal Electronic energy + Delta-G solvation = -20847.124558 eV Core-core repulsion = 17882.318021 eV Total energy + Delta-G solvation = -2964.806537 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.38862 -38.26085 -36.00226 -33.61479 -32.82285 -30.15556 -29.90438 -28.77193 -28.21802 -25.79963 -24.65027 -21.30826 -21.11036 -20.60308 -20.19740 -19.19628 -16.96559 -16.66045 -16.03880 -15.88269 -15.08579 -14.80108 -14.11277 -13.96873 -13.57407 -12.92994 -12.91156 -12.66984 -12.62605 -11.97870 -11.88834 -11.61770 -11.49954 -11.41325 -11.32371 -11.11557 -10.85470 -10.59141 -10.48283 -10.38906 -10.29116 -10.10787 -9.33561 -8.94578 -8.36973 -7.85379 -7.17962 -6.78669 -6.66887 -4.60615 2.33070 2.77038 2.98747 3.01650 3.04645 3.78701 4.05916 4.17906 4.41568 4.80457 4.86718 5.01830 5.11169 5.37181 5.52139 5.59091 5.61920 5.71485 5.77713 5.88744 5.89555 5.94139 5.98118 6.07469 6.13976 6.15692 6.31532 6.49811 6.64870 6.79130 6.92805 6.96135 7.01957 7.33642 7.49826 7.54012 7.68560 7.79962 7.98407 8.03699 8.37041 8.66140 9.06172 9.98930 10.22836 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.012264 B = 0.008741 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.574168 B = 3202.585330 C = 5184.159230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.078 3.922 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.444 4.444 8 H 0.085 0.915 9 C 0.418 3.582 10 N -0.537 5.537 11 C 0.104 3.896 12 C -0.132 4.132 13 C -0.124 4.124 14 C -0.185 4.185 15 C -0.089 4.089 16 C 0.002 3.998 17 N -0.537 5.537 18 C 0.147 3.853 19 C 0.050 3.950 20 H 0.057 0.943 21 C -0.117 4.117 22 C -0.121 4.121 23 C 0.035 3.965 24 N -0.655 5.655 25 H 0.278 0.722 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.371 -5.939 2.606 10.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.482 4.482 8 H 0.103 0.897 9 C 0.181 3.819 10 N -0.260 5.260 11 C -0.023 4.023 12 C -0.153 4.153 13 C -0.145 4.145 14 C -0.206 4.206 15 C -0.111 4.111 16 C -0.105 4.105 17 N -0.232 5.232 18 C 0.022 3.978 19 C -0.061 4.061 20 H 0.075 0.925 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.095 4.095 24 N -0.285 5.285 25 H 0.089 0.911 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.980 -5.604 2.140 9.983 hybrid contribution 0.741 0.689 0.707 1.235 sum 8.721 -4.915 2.847 10.408 Atomic orbital electron populations 1.69979 1.07180 1.28480 1.28264 1.25841 0.94861 1.00703 0.93494 0.86194 0.80223 0.80531 0.79184 1.19333 1.19942 1.18563 1.18451 0.94314 0.87656 1.47754 0.89669 1.20449 0.87158 0.83674 0.90605 1.71388 1.09316 1.13013 1.32330 1.19580 0.92160 0.91659 0.98938 1.19745 0.95011 0.93322 1.07230 1.20203 0.96889 0.93673 1.03737 1.20311 0.91970 0.97859 1.10432 1.19663 0.97147 0.90506 1.03766 1.18825 0.89511 0.91638 1.10560 1.45500 1.03859 1.06841 1.67011 1.21260 0.80263 1.01142 0.95094 1.22956 0.93912 0.91892 0.97388 0.92456 1.22270 0.94869 0.98716 0.99769 1.22253 0.96657 0.98787 0.98246 1.22871 0.92735 1.00671 0.93227 1.63668 1.05485 1.28287 1.31039 0.91053 0.87680 0.88070 0.88057 0.87932 0.89846 0.90623 0.91016 0.91291 0.91310 0.91757 0.90556 0.94664 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.05 11.88 55.57 0.66 -18.39 16 2 C 0.08 1.93 5.49 -17.29 -0.09 1.83 16 3 Si 0.92 17.88 29.57 -169.99 -5.03 12.86 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 7 C -0.44 -11.22 8.96 -38.06 -0.34 -11.56 16 8 H 0.09 1.95 7.19 -52.49 -0.38 1.58 16 9 C 0.42 11.11 7.41 -155.67 -1.15 9.95 16 10 N -0.54 -15.38 9.35 -10.31 -0.10 -15.47 16 11 C 0.10 2.72 7.21 -84.89 -0.61 2.10 16 12 C -0.13 -3.06 10.07 -39.40 -0.40 -3.45 16 13 C -0.12 -2.49 9.96 -39.96 -0.40 -2.89 16 14 C -0.18 -3.59 10.04 -39.38 -0.40 -3.99 16 15 C -0.09 -1.84 10.04 -39.50 -0.40 -2.24 16 16 C 0.00 0.05 6.88 -83.75 -0.58 -0.53 16 17 N -0.54 -12.30 2.85 -113.48 -0.32 -12.63 16 18 C 0.15 2.68 5.45 -4.05 -0.02 2.66 16 19 C 0.05 0.80 3.40 -66.06 -0.22 0.58 16 20 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 21 C -0.12 -1.48 6.55 -25.35 -0.17 -1.65 16 22 C -0.12 -1.36 7.00 -25.35 -0.18 -1.54 16 23 C 0.03 0.44 7.47 -2.18 -0.02 0.43 16 24 N -0.66 -10.33 7.28 -102.73 -0.75 -11.08 16 25 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 26 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 27 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.08 1.46 7.39 -51.92 -0.38 1.07 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.07 0.85 7.86 -51.93 -0.41 0.44 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.34 6.09 8.92 -39.29 -0.35 5.74 16 LS Contribution 317.05 15.07 4.78 4.78 Total: -1.00 -29.35 317.05 -11.03 -40.38 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.30 Total: 9.86 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -4.97 Total: -10.30 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.51 Total: -57.57 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.35 -11.03 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110952036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.830 kcal (2) G-P(sol) polarization free energy of solvation -29.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds