Wall clock time and date at job start Mon Mar 30 2020 05:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30581 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48501 * 109.46846 * 274.97625 * 3 2 1 5 5 H 1.48496 * 109.47463 * 34.97819 * 3 2 1 6 6 H 1.48495 * 109.47081 * 154.98356 * 3 2 1 7 7 C 1.40352 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00065 * 186.03748 * 7 2 1 9 9 C 1.40183 * 119.99843 * 6.03070 * 7 2 1 10 10 N 1.32469 * 125.30914 * 354.03245 * 9 7 2 11 11 C 1.33970 * 109.78431 * 180.02562 * 10 9 7 12 12 C 1.40531 * 133.19694 * 180.02562 * 11 10 9 13 13 C 1.36357 * 119.84874 * 179.24237 * 12 11 10 14 14 C 1.39045 * 120.75874 * 0.67768 * 13 12 11 15 15 C 1.37963 * 120.57057 * 359.55701 * 14 13 12 16 16 C 1.38724 * 119.76618 * 0.02562 * 15 14 13 17 17 N 1.37859 * 125.30317 * 174.05958 * 9 7 2 18 18 C 1.46493 * 126.53671 * 359.95277 * 17 9 7 19 19 C 1.52996 * 109.46968 * 90.02740 * 18 17 9 20 20 H 1.09003 * 110.37122 * 307.34797 * 19 18 17 21 21 C 1.54381 * 110.41315 * 184.99840 * 19 18 17 22 22 C 1.54258 * 105.06508 * 217.36938 * 21 19 18 23 23 C 1.54387 * 105.05762 * 0.02562 * 22 21 19 24 24 N 1.48555 * 104.59313 * 23.84952 * 23 22 21 25 25 H 0.97003 * 120.00355 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.07815 * 359.97438 * 12 11 10 27 27 H 1.08002 * 119.62354 * 180.25365 * 13 12 11 28 28 H 1.07997 * 119.71670 * 179.58614 * 14 13 12 29 29 H 1.08000 * 120.11449 * 180.02562 * 15 14 13 30 30 H 1.09009 * 109.47282 * 330.02832 * 18 17 9 31 31 H 1.09002 * 109.46890 * 210.02851 * 18 17 9 32 32 H 1.09005 * 110.32113 * 336.26726 * 21 19 18 33 33 H 1.09002 * 110.32847 * 98.37201 * 21 19 18 34 34 H 1.08999 * 110.32580 * 118.89263 * 22 21 19 35 35 H 1.09000 * 110.32566 * 241.00121 * 22 21 19 36 36 H 1.08995 * 110.40787 * 142.63141 * 23 22 21 37 37 H 1.09004 * 110.40445 * 264.95257 * 23 22 21 38 38 H 1.00905 * 111.00088 * 200.95903 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 2.3821 2.1071 -1.3948 5 1 1.4939 2.6200 0.8026 6 1 3.5860 1.4120 0.5920 7 6 2.0076 -1.2155 0.0005 8 1 3.0830 -1.2180 0.0989 9 6 1.3124 -2.4262 -0.1265 10 7 -0.0060 -2.5542 -0.1408 11 6 -0.3347 -3.8460 -0.2754 12 6 -1.5639 -4.5234 -0.3473 13 6 -1.5842 -5.8778 -0.5038 14 6 -0.4001 -6.6027 -0.5797 15 6 0.8201 -5.9631 -0.5069 16 6 0.8674 -4.5849 -0.3563 17 7 1.8944 -3.6693 -0.2554 18 6 3.3295 -3.9615 -0.2852 19 6 3.8285 -4.2130 1.1391 20 1 3.5424 -3.3887 1.7924 21 6 5.3609 -4.3998 1.1477 22 6 5.6256 -5.4924 2.2040 23 6 4.2307 -5.8742 2.7444 24 7 3.2920 -5.4985 1.6561 25 1 -0.4851 0.8400 -0.0004 26 1 -2.4903 -3.9712 -0.2906 27 1 -2.5309 -6.3942 -0.5627 28 1 -0.4359 -7.6757 -0.6970 29 1 1.7353 -6.5334 -0.5671 30 1 3.8643 -3.1134 -0.7131 31 1 3.5072 -4.8478 -0.8943 32 1 5.7077 -4.7286 0.1679 33 1 5.8542 -3.4700 1.4308 34 1 6.1023 -6.3573 1.7429 35 1 6.2502 -5.0997 3.0065 36 1 4.1786 -6.9454 2.9386 37 1 4.0080 -5.3128 3.6518 38 1 2.3546 -5.3823 2.0111 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110952036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:44 Heat of formation + Delta-G solvation = 45.726055 kcal Electronic energy + Delta-G solvation = -20847.893251 eV Core-core repulsion = 17882.318021 eV Total energy + Delta-G solvation = -2965.575230 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.15004 -39.44909 -37.69822 -35.40428 -34.48346 -31.58136 -31.10396 -30.53395 -29.78528 -27.61756 -26.03277 -23.09297 -22.33370 -22.30266 -21.37054 -20.84134 -18.76938 -17.98448 -17.72527 -17.36767 -16.52373 -16.33109 -15.64528 -15.37488 -15.19028 -14.57554 -14.43337 -14.38544 -13.80355 -13.35953 -13.17931 -13.07079 -13.05295 -12.92471 -12.64002 -12.37155 -12.29872 -12.14549 -12.01859 -11.91786 -11.75813 -11.42860 -11.07128 -10.72193 -9.76145 -9.62235 -8.98086 -8.55435 -8.49124 -6.52285 0.57374 1.06928 1.39677 1.44582 1.55674 2.15225 2.36929 2.44713 3.17293 3.25138 3.64759 3.72622 3.83036 4.02968 4.08107 4.13228 4.30783 4.37683 4.44457 4.52766 4.59836 4.67047 4.79344 4.84336 4.95376 4.97074 5.00352 5.05869 5.16298 5.20448 5.23931 5.30359 5.62225 5.72824 5.81553 5.97633 6.03756 6.15782 6.22698 6.29807 6.58746 6.81764 7.24918 8.12191 8.44011 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.012264 B = 0.008741 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.574168 B = 3202.585330 C = 5184.159230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.031 3.969 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.247 1.247 7 C -0.470 4.470 8 H 0.100 0.900 9 C 0.391 3.609 10 N -0.587 5.587 11 C 0.047 3.953 12 C -0.152 4.152 13 C -0.117 4.117 14 C -0.167 4.167 15 C -0.088 4.088 16 C -0.006 4.006 17 N -0.533 5.533 18 C 0.143 3.857 19 C 0.054 3.946 20 H 0.025 0.975 21 C -0.112 4.112 22 C -0.114 4.114 23 C 0.031 3.969 24 N -0.659 5.659 25 H 0.282 0.718 26 H 0.099 0.901 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.123 0.877 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.032 0.968 38 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.485 -7.857 2.606 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.191 4.191 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.170 1.170 7 C -0.507 4.507 8 H 0.118 0.882 9 C 0.152 3.848 10 N -0.312 5.312 11 C -0.078 4.078 12 C -0.173 4.173 13 C -0.137 4.137 14 C -0.187 4.187 15 C -0.110 4.110 16 C -0.114 4.114 17 N -0.228 5.228 18 C 0.020 3.980 19 C -0.057 4.057 20 H 0.043 0.957 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.098 4.098 24 N -0.287 5.287 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.158 0.842 28 H 0.163 0.837 29 H 0.141 0.859 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.050 0.950 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.123 -7.584 2.140 12.828 hybrid contribution -0.010 1.042 0.696 1.253 sum 10.112 -6.542 2.836 12.373 Atomic orbital electron populations 1.70127 1.09350 1.29668 1.30288 1.26950 0.95571 1.04507 0.92109 0.84979 0.79074 0.75011 0.79310 1.18804 1.19579 1.16962 1.18875 0.95085 0.88047 1.48724 0.88236 1.20763 0.87295 0.85252 0.91509 1.71244 1.11077 1.14993 1.33858 1.20105 0.94357 0.91707 1.01627 1.20007 0.94064 0.94957 1.08253 1.20615 0.99110 0.92293 1.01685 1.20866 0.90929 0.99918 1.07030 1.19966 0.98757 0.89214 1.03042 1.19136 0.88850 0.92717 1.10651 1.45625 1.05434 1.05721 1.66023 1.21540 0.77879 1.01637 0.96898 1.22837 0.96494 0.91190 0.95175 0.95667 1.22278 0.91713 0.99952 1.01118 1.22263 0.95811 0.98807 0.98305 1.23009 0.93000 1.01464 0.92322 1.63706 1.05096 1.27624 1.32274 0.90778 0.88321 0.84230 0.83725 0.85903 0.89546 0.89488 0.89820 0.90311 0.89807 0.89962 0.89121 0.95001 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.31 11.88 21.89 0.26 -43.05 16 2 C 0.03 1.58 5.49 85.39 0.47 2.04 16 3 Si 1.00 37.43 29.57 68.60 2.03 39.45 16 4 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 7 C -0.47 -24.74 8.96 23.26 0.21 -24.53 16 8 H 0.10 4.70 7.19 -2.91 -0.02 4.67 16 9 C 0.39 21.88 7.41 133.69 0.99 22.87 16 10 N -0.59 -35.71 9.35 -186.53 -1.74 -37.45 16 11 C 0.05 2.58 7.21 40.14 0.29 2.87 16 12 C -0.15 -7.19 10.07 22.39 0.23 -6.96 16 13 C -0.12 -4.43 9.96 22.02 0.22 -4.21 16 14 C -0.17 -5.92 10.04 22.40 0.22 -5.70 16 15 C -0.09 -3.49 10.04 22.32 0.22 -3.27 16 16 C -0.01 -0.27 6.88 39.06 0.27 0.00 16 17 N -0.53 -25.19 2.85 -512.95 -1.46 -26.65 16 18 C 0.14 5.21 5.45 86.38 0.47 5.68 16 19 C 0.05 1.73 3.40 45.06 0.15 1.88 16 20 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 21 C -0.11 -2.56 6.55 31.49 0.21 -2.35 16 22 C -0.11 -2.20 7.00 31.49 0.22 -1.98 16 23 C 0.03 0.73 7.47 86.45 0.65 1.38 16 24 N -0.66 -20.13 7.28 -478.94 -3.49 -23.62 16 25 H 0.28 14.32 8.29 -92.71 -0.77 13.55 16 26 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 27 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 28 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 29 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 30 H 0.09 3.03 7.39 -2.38 -0.02 3.01 16 31 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.08 1.73 7.86 -2.38 -0.02 1.71 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.33 11.67 8.92 -89.69 -0.80 10.87 16 Total: -1.00 -68.56 317.05 0.67 -67.88 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: 0.26 Total: 35.72 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 4.81 Total: -12.29 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -6.44 Total: -130.77 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.45 kcal Total: -68.56 0.67 -67.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110952036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.611 kcal (2) G-P(sol) polarization free energy of solvation -68.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds