Wall clock time and date at job start Mon Mar 30 2020 05:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30584 * 1 3 3 Si 1.86803 * 120.00193 * 2 1 4 4 H 1.48500 * 109.47073 * 269.99919 * 3 2 1 5 5 H 1.48497 * 109.46687 * 29.99514 * 3 2 1 6 6 H 1.48499 * 109.47050 * 149.99916 * 3 2 1 7 7 C 1.40351 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00219 * 180.02562 * 7 2 1 9 9 C 1.40187 * 120.00040 * 0.02562 * 7 2 1 10 10 N 1.32471 * 125.30376 * 0.02562 * 9 7 2 11 11 C 1.33969 * 109.78343 * 180.02562 * 10 9 7 12 12 C 1.40535 * 133.19964 * 180.02562 * 11 10 9 13 13 C 1.36356 * 119.84770 * 179.97438 * 12 11 10 14 14 C 1.39041 * 120.76454 * 359.96991 * 13 12 11 15 15 C 1.37963 * 120.56981 * 0.04875 * 14 13 12 16 16 C 1.38722 * 119.76377 * 359.96501 * 15 14 13 17 17 N 1.37851 * 125.30879 * 180.02562 * 9 7 2 18 18 C 1.46494 * 126.53333 * 0.02562 * 17 9 7 19 19 C 1.53008 * 109.46966 * 90.02990 * 18 17 9 20 20 H 1.09004 * 110.64170 * 308.14952 * 19 18 17 21 21 C 1.54597 * 110.72384 * 185.00049 * 19 18 17 22 22 C 1.53993 * 105.14043 * 219.68392 * 21 19 18 23 23 N 1.47903 * 107.05468 * 358.77211 * 22 21 19 24 24 C 1.48532 * 105.82534 * 25.33181 * 23 22 21 25 25 H 0.96998 * 119.99893 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.07932 * 359.73065 * 12 11 10 27 27 H 1.08008 * 119.61844 * 180.02562 * 13 12 11 28 28 H 1.07999 * 119.71828 * 180.02562 * 14 13 12 29 29 H 1.07997 * 120.11974 * 179.97438 * 15 14 13 30 30 H 1.08999 * 109.47363 * 210.02724 * 18 17 9 31 31 H 1.08999 * 109.47601 * 330.03227 * 18 17 9 32 32 H 1.09001 * 110.30744 * 338.59289 * 21 19 18 33 33 H 1.08993 * 110.31011 * 100.76191 * 21 19 18 34 34 H 1.08995 * 109.91927 * 118.12372 * 22 21 19 35 35 H 1.08994 * 109.91810 * 239.22643 * 22 21 19 36 36 H 1.00904 * 110.99965 * 145.84840 * 23 22 21 37 37 H 1.08994 * 110.67054 * 202.35634 * 24 23 22 38 38 H 1.09005 * 110.66649 * 79.22195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.4874 2.0464 -1.4001 5 1 1.4373 2.6526 0.6999 6 1 3.5374 1.4401 0.7000 7 6 2.0076 -1.2155 0.0005 8 1 3.0876 -1.2155 0.0010 9 6 1.3067 -2.4295 0.0005 10 7 -0.0123 -2.5520 -0.0004 11 6 -0.3473 -3.8492 0.0005 12 6 -1.5797 -4.5245 -0.0004 13 6 -1.6065 -5.8878 0.0004 14 6 -0.4260 -6.6224 0.0014 15 6 0.7973 -5.9845 0.0027 16 6 0.8512 -4.5983 0.0022 17 7 1.8826 -3.6820 0.0015 18 6 3.3163 -3.9826 0.0033 19 6 3.8136 -4.0876 1.4465 20 1 3.5214 -3.2070 2.0187 21 6 5.3471 -4.2804 1.4841 22 6 5.5966 -5.3019 2.6091 23 7 4.2785 -5.6383 3.1898 24 6 3.2852 -5.3812 2.1158 25 1 -0.4850 0.8400 -0.0004 26 1 -2.5035 -3.9651 0.0023 27 1 -2.5558 -6.4030 -0.0007 28 1 -0.4670 -7.7016 0.0017 29 1 1.7097 -6.5622 0.0039 30 1 3.4900 -4.9281 -0.5105 31 1 3.8553 -3.1860 -0.5096 32 1 5.7025 -4.6727 0.5313 33 1 5.8415 -3.3365 1.7136 34 1 6.0617 -6.1987 2.1999 35 1 6.2409 -4.8646 3.3717 36 1 4.2493 -6.6024 3.4862 37 1 2.2942 -5.2182 2.5393 38 1 3.2689 -6.2047 1.4018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110952072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:52 Heat of formation + Delta-G solvation = 64.146966 kcal Electronic energy + Delta-G solvation = -20839.006977 eV Core-core repulsion = 17874.230538 eV Total energy + Delta-G solvation = -2964.776439 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46946 -38.34315 -36.08515 -33.72606 -33.07493 -30.57685 -29.17102 -28.82180 -28.30470 -25.85179 -24.72127 -21.46454 -21.34482 -20.65460 -20.24797 -19.18033 -16.99942 -16.35397 -16.29010 -16.04750 -15.15296 -14.84118 -14.05289 -13.88472 -13.79752 -13.05362 -12.89098 -12.75417 -12.67735 -12.42184 -11.97775 -11.64792 -11.52961 -11.39821 -11.33624 -11.09341 -10.71336 -10.60920 -10.46535 -10.41779 -10.27939 -10.15731 -9.34408 -8.98337 -8.47371 -7.89714 -7.23492 -6.85865 -6.67786 -4.62692 2.25195 2.70974 2.98896 3.02021 3.05377 3.77062 4.01344 4.13113 4.34697 4.77065 4.89157 4.93815 5.09314 5.27261 5.49724 5.51472 5.58019 5.65140 5.72785 5.84367 5.85897 5.90490 6.01332 6.03328 6.05597 6.31599 6.38149 6.51359 6.54733 6.72855 6.85101 6.87232 6.99469 7.25315 7.35738 7.47305 7.61538 7.73321 7.91031 7.98827 8.32096 8.63442 9.01937 9.95583 10.21330 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.012209 B = 0.008727 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.856122 B = 3207.704502 C = 5205.959896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.077 3.923 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.439 4.439 8 H 0.086 0.914 9 C 0.421 3.579 10 N -0.536 5.536 11 C 0.109 3.891 12 C -0.129 4.129 13 C -0.123 4.123 14 C -0.183 4.183 15 C -0.103 4.103 16 C -0.001 4.001 17 N -0.537 5.537 18 C 0.142 3.858 19 C -0.106 4.106 20 H 0.092 0.908 21 C -0.125 4.125 22 C 0.041 3.959 23 N -0.675 5.675 24 C 0.051 3.949 25 H 0.279 0.721 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.334 0.666 37 H 0.083 0.917 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.184 -6.711 1.529 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.477 4.477 8 H 0.104 0.896 9 C 0.185 3.815 10 N -0.260 5.260 11 C -0.018 4.018 12 C -0.151 4.151 13 C -0.144 4.144 14 C -0.204 4.204 15 C -0.124 4.124 16 C -0.108 4.108 17 N -0.233 5.233 18 C 0.018 3.982 19 C -0.127 4.127 20 H 0.111 0.889 21 C -0.164 4.164 22 C -0.088 4.088 23 N -0.303 5.303 24 C -0.078 4.078 25 H 0.090 0.910 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.149 0.851 37 H 0.101 0.899 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.453 -5.287 1.906 9.334 hybrid contribution 1.200 -0.811 -0.612 1.573 sum 8.654 -6.098 1.294 10.665 Atomic orbital electron populations 1.69972 1.07191 1.28593 1.27971 1.25856 0.94899 1.00766 0.93495 0.86185 0.80231 0.80328 0.79287 1.19297 1.19886 1.18491 1.18482 0.93961 0.87452 1.47780 0.89559 1.20439 0.87184 0.83484 0.90407 1.71400 1.09113 1.12838 1.32605 1.19572 0.92063 0.91537 0.98672 1.19774 0.95048 0.93171 1.07079 1.20200 0.96895 0.93516 1.03804 1.20274 0.91927 0.97699 1.10488 1.19571 0.96859 0.90287 1.05710 1.18830 0.89815 0.91382 1.10788 1.45482 1.03629 1.06229 1.67913 1.21266 0.80621 1.01106 0.95249 1.22538 0.93950 0.99240 0.96944 0.88944 1.22412 0.96175 0.99646 0.98176 1.22614 0.92121 0.97618 0.96459 1.63047 1.03717 1.27578 1.35984 1.23076 0.96601 0.96063 0.92065 0.90967 0.87482 0.87910 0.88008 0.88921 0.91607 0.89769 0.91472 0.90730 0.94550 0.90736 0.85143 0.89855 0.94275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.95 11.85 55.57 0.66 -18.29 16 2 C 0.08 1.90 5.50 -17.29 -0.10 1.81 16 3 Si 0.92 17.88 29.56 -169.99 -5.03 12.85 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.44 -11.08 8.99 -38.06 -0.34 -11.43 16 8 H 0.09 1.97 7.09 -52.49 -0.37 1.60 16 9 C 0.42 11.17 7.41 -155.67 -1.15 10.01 16 10 N -0.54 -15.32 9.33 -10.31 -0.10 -15.41 16 11 C 0.11 2.84 7.21 -84.89 -0.61 2.23 16 12 C -0.13 -2.97 10.07 -39.39 -0.40 -3.37 16 13 C -0.12 -2.44 9.96 -39.96 -0.40 -2.83 16 14 C -0.18 -3.48 10.04 -39.38 -0.40 -3.87 16 15 C -0.10 -2.06 9.60 -39.50 -0.38 -2.44 16 16 C 0.00 -0.02 6.52 -83.75 -0.55 -0.56 16 17 N -0.54 -12.23 2.80 -113.48 -0.32 -12.55 16 18 C 0.14 2.53 5.23 -4.04 -0.02 2.50 16 19 C -0.11 -1.73 3.28 -88.75 -0.29 -2.02 16 20 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 21 C -0.13 -1.58 6.51 -25.37 -0.17 -1.75 16 22 C 0.04 0.49 7.52 -2.75 -0.02 0.47 16 23 N -0.67 -9.29 7.51 -110.09 -0.83 -10.12 16 24 C 0.05 0.80 6.15 -1.90 -0.01 0.79 16 25 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 26 H 0.11 2.36 8.06 -52.49 -0.42 1.93 16 27 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.09 1.64 7.03 -52.49 -0.37 1.27 16 30 H 0.07 1.06 7.99 -51.93 -0.42 0.64 16 31 H 0.08 1.44 7.32 -51.93 -0.38 1.06 16 32 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.33 3.89 8.92 -39.29 -0.35 3.54 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.04 0.59 6.89 -51.93 -0.36 0.23 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -29.80 312.63 -10.89 -40.69 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.17 Total: 8.58 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -4.83 Total: -10.46 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.58 Total: -56.37 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.80 -10.89 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110952072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.837 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds