Wall clock time and date at job start Mon Mar 30 2020 05:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30584 * 1 3 3 Si 1.86803 * 120.00193 * 2 1 4 4 H 1.48500 * 109.47073 * 269.99919 * 3 2 1 5 5 H 1.48497 * 109.46687 * 29.99514 * 3 2 1 6 6 H 1.48499 * 109.47050 * 149.99916 * 3 2 1 7 7 C 1.40351 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00219 * 180.02562 * 7 2 1 9 9 C 1.40187 * 120.00040 * 0.02562 * 7 2 1 10 10 N 1.32471 * 125.30376 * 0.02562 * 9 7 2 11 11 C 1.33969 * 109.78343 * 180.02562 * 10 9 7 12 12 C 1.40535 * 133.19964 * 180.02562 * 11 10 9 13 13 C 1.36356 * 119.84770 * 179.97438 * 12 11 10 14 14 C 1.39041 * 120.76454 * 359.96991 * 13 12 11 15 15 C 1.37963 * 120.56981 * 0.04875 * 14 13 12 16 16 C 1.38722 * 119.76377 * 359.96501 * 15 14 13 17 17 N 1.37851 * 125.30879 * 180.02562 * 9 7 2 18 18 C 1.46494 * 126.53333 * 0.02562 * 17 9 7 19 19 C 1.53008 * 109.46966 * 90.02990 * 18 17 9 20 20 H 1.09004 * 110.64170 * 308.14952 * 19 18 17 21 21 C 1.54597 * 110.72384 * 185.00049 * 19 18 17 22 22 C 1.53993 * 105.14043 * 219.68392 * 21 19 18 23 23 N 1.47903 * 107.05468 * 358.77211 * 22 21 19 24 24 C 1.48532 * 105.82534 * 25.33181 * 23 22 21 25 25 H 0.96998 * 119.99893 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.07932 * 359.73065 * 12 11 10 27 27 H 1.08008 * 119.61844 * 180.02562 * 13 12 11 28 28 H 1.07999 * 119.71828 * 180.02562 * 14 13 12 29 29 H 1.07997 * 120.11974 * 179.97438 * 15 14 13 30 30 H 1.08999 * 109.47363 * 210.02724 * 18 17 9 31 31 H 1.08999 * 109.47601 * 330.03227 * 18 17 9 32 32 H 1.09001 * 110.30744 * 338.59289 * 21 19 18 33 33 H 1.08993 * 110.31011 * 100.76191 * 21 19 18 34 34 H 1.08995 * 109.91927 * 118.12372 * 22 21 19 35 35 H 1.08994 * 109.91810 * 239.22643 * 22 21 19 36 36 H 1.00904 * 110.99965 * 145.84840 * 23 22 21 37 37 H 1.08994 * 110.67054 * 202.35634 * 24 23 22 38 38 H 1.09005 * 110.66649 * 79.22195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.4874 2.0464 -1.4001 5 1 1.4373 2.6526 0.6999 6 1 3.5374 1.4401 0.7000 7 6 2.0076 -1.2155 0.0005 8 1 3.0876 -1.2155 0.0010 9 6 1.3067 -2.4295 0.0005 10 7 -0.0123 -2.5520 -0.0004 11 6 -0.3473 -3.8492 0.0005 12 6 -1.5797 -4.5245 -0.0004 13 6 -1.6065 -5.8878 0.0004 14 6 -0.4260 -6.6224 0.0014 15 6 0.7973 -5.9845 0.0027 16 6 0.8512 -4.5983 0.0022 17 7 1.8826 -3.6820 0.0015 18 6 3.3163 -3.9826 0.0033 19 6 3.8136 -4.0876 1.4465 20 1 3.5214 -3.2070 2.0187 21 6 5.3471 -4.2804 1.4841 22 6 5.5966 -5.3019 2.6091 23 7 4.2785 -5.6383 3.1898 24 6 3.2852 -5.3812 2.1158 25 1 -0.4850 0.8400 -0.0004 26 1 -2.5035 -3.9651 0.0023 27 1 -2.5558 -6.4030 -0.0007 28 1 -0.4670 -7.7016 0.0017 29 1 1.7097 -6.5622 0.0039 30 1 3.4900 -4.9281 -0.5105 31 1 3.8553 -3.1860 -0.5096 32 1 5.7025 -4.6727 0.5313 33 1 5.8415 -3.3365 1.7136 34 1 6.0617 -6.1987 2.1999 35 1 6.2409 -4.8646 3.3717 36 1 4.2493 -6.6024 3.4862 37 1 2.2942 -5.2182 2.5393 38 1 3.2689 -6.2047 1.4018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110952072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:51 Heat of formation + Delta-G solvation = 45.406538 kcal Electronic energy + Delta-G solvation = -20839.819623 eV Core-core repulsion = 17874.230538 eV Total energy + Delta-G solvation = -2965.589085 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.20226 -39.53394 -37.75141 -35.46045 -34.70821 -32.02563 -30.73323 -30.34949 -29.72623 -27.65138 -26.14888 -23.13361 -22.63475 -22.33583 -21.53800 -20.76396 -18.78803 -17.86620 -17.80818 -17.39656 -16.56501 -16.42255 -15.66357 -15.49523 -15.05591 -14.62870 -14.41753 -14.31868 -14.15532 -13.61838 -13.32174 -13.25022 -13.01299 -12.85491 -12.65580 -12.45006 -12.32218 -12.14558 -11.99629 -11.88941 -11.78446 -11.53814 -11.07063 -10.73943 -9.78735 -9.50597 -9.00906 -8.60662 -8.49156 -6.53225 0.52712 1.03141 1.40008 1.44854 1.55956 2.14699 2.35170 2.41352 3.15140 3.29696 3.59177 3.64549 3.74438 3.94344 4.04125 4.10633 4.26490 4.31420 4.34872 4.48041 4.57328 4.68451 4.68621 4.75520 4.86016 4.91612 4.98811 5.01232 5.13650 5.18354 5.23320 5.30213 5.58722 5.70019 5.76955 5.93582 5.98612 6.18405 6.25453 6.41962 6.55869 6.80287 7.22431 8.10558 8.43594 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.012209 B = 0.008727 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.856122 B = 3207.704502 C = 5205.959896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.030 3.970 3 Si 0.997 3.003 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.467 4.467 8 H 0.101 0.899 9 C 0.393 3.607 10 N -0.587 5.587 11 C 0.049 3.951 12 C -0.150 4.150 13 C -0.118 4.118 14 C -0.165 4.165 15 C -0.103 4.103 16 C -0.010 4.010 17 N -0.535 5.535 18 C 0.138 3.862 19 C -0.104 4.104 20 H 0.052 0.948 21 C -0.118 4.118 22 C 0.043 3.957 23 N -0.687 5.687 24 C 0.061 3.939 25 H 0.282 0.718 26 H 0.100 0.900 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.124 0.876 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.347 0.653 37 H 0.044 0.956 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.480 -9.114 1.412 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.192 4.192 3 Si 0.816 3.184 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.172 1.172 7 C -0.504 4.504 8 H 0.119 0.881 9 C 0.154 3.846 10 N -0.312 5.312 11 C -0.076 4.076 12 C -0.171 4.171 13 C -0.138 4.138 14 C -0.185 4.185 15 C -0.124 4.124 16 C -0.118 4.118 17 N -0.229 5.229 18 C 0.015 3.985 19 C -0.124 4.124 20 H 0.070 0.930 21 C -0.157 4.157 22 C -0.086 4.086 23 N -0.318 5.318 24 C -0.068 4.068 25 H 0.093 0.907 26 H 0.118 0.882 27 H 0.159 0.841 28 H 0.166 0.834 29 H 0.142 0.858 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.164 0.836 37 H 0.062 0.938 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.768 -7.756 1.795 12.601 hybrid contribution 0.397 -0.319 -0.553 0.751 sum 10.164 -8.075 1.242 13.041 Atomic orbital electron populations 1.70123 1.09338 1.29714 1.30166 1.26962 0.95603 1.04546 0.92120 0.84988 0.78890 0.74882 0.79603 1.18423 1.19634 1.17165 1.18903 0.94731 0.87873 1.48916 0.88131 1.20754 0.87348 0.85164 0.91327 1.71247 1.10920 1.14935 1.34116 1.20119 0.94385 0.91595 1.01532 1.20042 0.94062 0.94893 1.08132 1.20635 0.99257 0.92101 1.01796 1.20880 0.90868 0.99964 1.06767 1.19988 0.98905 0.88918 1.04583 1.19183 0.89072 0.92646 1.10944 1.45625 1.05367 1.05065 1.66878 1.21574 0.78004 1.02247 0.96644 1.22377 0.96894 0.97935 0.95204 0.92974 1.22420 0.92874 1.00532 0.99845 1.22683 0.91126 0.98405 0.96388 1.62958 1.04329 1.28872 1.35617 1.22822 0.95311 0.96125 0.92563 0.90736 0.88219 0.84086 0.83384 0.85782 0.89200 0.89519 0.89217 0.90298 0.91950 0.89892 0.83640 0.93754 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.44 11.85 21.89 0.26 -43.18 16 2 C 0.03 1.54 5.50 85.39 0.47 2.01 16 3 Si 1.00 37.69 29.56 68.60 2.03 39.72 16 4 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 7 C -0.47 -24.70 8.99 23.26 0.21 -24.49 16 8 H 0.10 4.76 7.09 -2.91 -0.02 4.74 16 9 C 0.39 22.04 7.41 133.69 0.99 23.03 16 10 N -0.59 -35.84 9.33 -186.52 -1.74 -37.58 16 11 C 0.05 2.68 7.21 40.14 0.29 2.96 16 12 C -0.15 -7.07 10.07 22.39 0.23 -6.85 16 13 C -0.12 -4.39 9.96 22.02 0.22 -4.17 16 14 C -0.16 -5.63 10.04 22.40 0.22 -5.40 16 15 C -0.10 -3.89 9.60 22.32 0.21 -3.67 16 16 C -0.01 -0.50 6.52 39.05 0.25 -0.24 16 17 N -0.53 -25.04 2.80 -512.94 -1.43 -26.48 16 18 C 0.14 4.83 5.23 86.38 0.45 5.28 16 19 C -0.10 -3.32 3.28 -9.59 -0.03 -3.35 16 20 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 21 C -0.12 -2.68 6.51 31.47 0.20 -2.47 16 22 C 0.04 0.87 7.52 86.45 0.65 1.52 16 23 N -0.69 -17.51 7.51 -502.22 -3.77 -21.28 16 24 C 0.06 1.85 6.15 86.65 0.53 2.39 16 25 H 0.28 14.40 8.29 -92.71 -0.77 13.64 16 26 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 27 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 28 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 29 H 0.12 3.88 7.03 -2.91 -0.02 3.86 16 30 H 0.09 2.67 7.99 -2.39 -0.02 2.66 16 31 H 0.09 2.94 7.32 -2.39 -0.02 2.93 16 32 H 0.09 1.65 7.85 -2.39 -0.02 1.63 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.35 7.16 8.92 -89.69 -0.80 6.36 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.44 6.89 -2.38 -0.02 1.43 16 Total: -1.00 -71.12 312.63 0.52 -70.60 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.27 Total: 31.66 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 4.91 Total: -13.45 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -6.69 Total: -128.52 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -71.12 0.52 -70.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110952072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.006 kcal (2) G-P(sol) polarization free energy of solvation -71.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds