Wall clock time and date at job start Mon Mar 30 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47144 * 289.28972 * 3 2 1 5 5 C 1.36938 * 120.00374 * 264.40084 * 4 3 2 6 6 H 1.07994 * 120.00144 * 143.96553 * 5 4 3 7 7 C 1.38814 * 119.99768 * 323.96758 * 5 4 3 8 8 N 1.31620 * 119.99911 * 148.74739 * 7 5 4 9 9 Si 1.86804 * 119.99967 * 328.75386 * 7 5 4 10 10 H 1.48502 * 109.47268 * 86.31765 * 9 7 5 11 11 H 1.48503 * 109.46752 * 206.31500 * 9 7 5 12 12 H 1.48490 * 109.47183 * 326.31212 * 9 7 5 13 13 C 1.46499 * 119.99981 * 84.39889 * 4 3 2 14 14 H 1.09003 * 109.75668 * 7.23034 * 13 4 3 15 15 C 1.53261 * 109.72693 * 127.87826 * 13 4 3 16 16 C 1.51514 * 110.73374 * 204.19573 * 15 13 4 17 17 N 1.45521 * 114.60273 * 292.19870 * 16 15 13 18 18 C 1.46922 * 112.69577 * 69.27635 * 17 16 15 19 19 C 1.51466 * 108.56846 * 273.44052 * 18 17 16 20 20 C 1.38327 * 119.69193 * 250.20694 * 19 18 17 21 21 C 1.38308 * 119.62670 * 180.24706 * 20 19 18 22 22 C 1.38252 * 120.09875 * 359.97438 * 21 20 19 23 23 C 1.38319 * 120.05002 * 359.97438 * 22 21 20 24 24 C 1.37268 * 120.06290 * 70.39841 * 19 18 17 25 25 H 1.09009 * 109.46976 * 169.29566 * 3 2 1 26 26 H 1.09003 * 109.47735 * 49.29137 * 3 2 1 27 27 H 0.96998 * 119.99786 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.22505 * 83.87764 * 15 13 4 29 29 H 1.09002 * 109.22907 * 324.51953 * 15 13 4 30 30 H 1.08996 * 108.45877 * 170.87220 * 16 15 13 31 31 H 1.08998 * 108.32271 * 53.43026 * 16 15 13 32 32 H 1.00904 * 111.00228 * 194.48392 * 17 16 15 33 33 H 1.08996 * 109.62253 * 153.71171 * 18 17 16 34 34 H 1.09001 * 109.76799 * 33.24835 * 18 17 16 35 35 H 1.07993 * 120.18810 * 0.27481 * 20 19 18 36 36 H 1.08000 * 119.94738 * 180.25070 * 21 20 19 37 37 H 1.08002 * 119.97182 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.20107 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0965 -0.4554 1.3037 5 6 3.4334 0.4582 2.2665 6 1 3.2338 0.2453 3.3063 7 6 4.0315 1.6579 1.9060 8 7 3.8162 2.7416 2.6212 9 14 5.1417 1.7342 0.4056 10 1 4.3192 1.9761 -0.8070 11 1 6.1195 2.8399 0.5691 12 1 5.8689 0.4476 0.2619 13 6 3.2246 -1.8889 1.5774 14 1 3.0374 -2.4562 0.6656 15 6 4.6346 -2.1927 2.0954 16 6 5.0029 -3.6386 1.8318 17 7 4.2368 -4.6086 2.5997 18 6 2.8306 -4.6806 2.1800 19 6 2.0477 -3.6255 2.9337 20 6 1.1451 -4.0086 3.9094 21 6 0.4272 -3.0443 4.5933 22 6 0.6124 -1.7056 4.3021 23 6 1.5169 -1.3276 3.3263 24 6 2.2316 -2.2961 2.6456 25 1 2.9708 1.0107 -0.1909 26 1 2.9717 -0.6694 -0.7790 27 1 4.2345 3.5798 2.3695 28 1 4.6716 -2.0028 3.1681 29 1 5.3499 -1.5426 1.5916 30 1 6.0597 -3.7731 2.0623 31 1 4.8537 -3.8424 0.7715 32 1 4.6707 -5.5190 2.5678 33 1 2.4300 -5.6678 2.4102 34 1 2.7558 -4.4960 1.1084 35 1 1.0022 -5.0548 4.1363 36 1 -0.2759 -3.3374 5.3589 37 1 0.0504 -0.9543 4.8371 38 1 1.6632 -0.2825 3.0966 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129448403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:31 Heat of formation + Delta-G solvation = 95.551786 kcal Electronic energy + Delta-G solvation = -21375.441218 eV Core-core repulsion = 18412.026594 eV Total energy + Delta-G solvation = -2963.414624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.70331 -36.81984 -36.26601 -35.02150 -32.35914 -31.30057 -30.87481 -29.55284 -27.11448 -25.56343 -24.71077 -22.33226 -21.55911 -20.25458 -19.41731 -18.04440 -16.57305 -16.05653 -15.86854 -15.30688 -14.95956 -14.40887 -14.35893 -13.91866 -13.51733 -13.39543 -13.24554 -12.74149 -12.38954 -12.23578 -12.17594 -11.99321 -11.64854 -11.47717 -11.25926 -11.12791 -10.84399 -10.70214 -10.52239 -10.33400 -10.11698 -9.94826 -9.53014 -8.66733 -8.28332 -8.10437 -7.93523 -7.26585 -6.24459 -3.61971 1.98429 2.09774 3.14395 3.35372 3.38179 3.48569 3.62676 4.24894 4.34055 4.62866 4.76610 4.93094 5.09462 5.13313 5.27869 5.42719 5.48169 5.56660 5.60197 5.70514 5.78306 5.88458 5.96010 6.02487 6.14064 6.24110 6.32296 6.41202 6.53072 6.67992 6.80940 6.99856 7.07917 7.23300 7.31170 7.38283 7.56995 7.74576 7.78513 8.17285 8.41089 8.72534 9.46419 9.81495 10.88738 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.017128 B = 0.008375 C = 0.007174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.344905 B = 3342.336840 C = 3901.927505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.204 3.796 3 C 0.212 3.788 4 N -0.581 5.581 5 C -0.293 4.293 6 H 0.096 0.904 7 C 0.052 3.948 8 N -0.869 5.869 9 Si 0.851 3.149 10 H -0.279 1.279 11 H -0.296 1.296 12 H -0.264 1.264 13 C 0.210 3.790 14 H 0.062 0.938 15 C -0.113 4.113 16 C 0.069 3.931 17 N -0.691 5.691 18 C 0.104 3.896 19 C -0.082 4.082 20 C -0.124 4.124 21 C -0.134 4.134 22 C -0.133 4.133 23 C -0.096 4.096 24 C -0.075 4.075 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.268 0.732 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.019 0.981 32 H 0.341 0.659 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.863 -12.691 -2.240 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.116 4.116 3 C 0.083 3.917 4 N -0.301 5.301 5 C -0.420 4.420 6 H 0.113 0.887 7 C -0.152 4.152 8 N -0.507 5.507 9 Si 0.679 3.321 10 H -0.206 1.206 11 H -0.223 1.223 12 H -0.188 1.188 13 C 0.104 3.896 14 H 0.080 0.920 15 C -0.152 4.152 16 C -0.061 4.061 17 N -0.323 5.323 18 C -0.024 4.024 19 C -0.083 4.083 20 C -0.143 4.143 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.113 4.113 24 C -0.077 4.077 25 H 0.124 0.876 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.159 0.841 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.144 -12.046 -1.696 12.166 hybrid contribution 1.103 -0.222 -1.372 1.775 sum 1.247 -12.268 -3.068 12.707 Atomic orbital electron populations 1.80975 1.14112 1.10328 1.09842 1.31377 0.96872 0.91704 0.91688 1.19309 0.79930 1.02466 0.90037 1.44120 1.71923 1.01217 1.12824 1.18788 1.36975 0.96460 0.89752 0.88704 1.25490 0.97463 0.95398 0.96889 1.69996 1.40573 0.99057 1.41032 0.87455 0.82954 0.78067 0.83671 1.20645 1.22262 1.18811 1.19668 0.91948 0.84277 0.93716 0.92026 1.21645 0.97030 0.93149 1.03377 1.21388 0.96986 0.93488 0.94218 1.59060 1.01915 1.11200 1.60095 1.20953 0.87971 0.96948 0.96563 1.19458 0.97197 0.93851 0.97773 1.20792 0.97975 0.98363 0.97169 1.20978 1.00458 0.93480 1.00330 1.21229 0.99359 0.95509 0.99081 1.22141 0.93047 1.02687 0.93464 1.20387 0.97064 0.92016 0.98279 0.87590 0.89934 0.92215 0.90778 0.90154 0.91594 0.96241 0.84065 0.91134 0.93722 0.87237 0.87393 0.87124 0.81940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.44 18.54 42.15 0.78 -9.66 16 2 C 0.20 4.16 15.75 -20.76 -0.33 3.83 16 3 C 0.21 4.00 4.91 -6.83 -0.03 3.96 16 4 N -0.58 -11.82 1.53 -169.73 -0.26 -12.08 16 5 C -0.29 -6.99 7.17 -15.06 -0.11 -7.10 16 6 H 0.10 2.51 6.11 -52.49 -0.32 2.19 16 7 C 0.05 1.29 5.07 -17.43 -0.09 1.20 16 8 N -0.87 -23.79 13.97 55.49 0.78 -23.01 16 9 Si 0.85 18.54 25.96 -169.99 -4.41 14.13 16 10 H -0.28 -5.74 6.28 56.52 0.35 -5.38 16 11 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 13 C 0.21 3.80 2.36 -68.59 -0.16 3.64 16 14 H 0.06 1.03 6.67 -51.93 -0.35 0.68 16 15 C -0.11 -1.92 4.65 -27.35 -0.13 -2.05 16 16 C 0.07 0.93 5.87 -5.32 -0.03 0.89 16 17 N -0.69 -8.91 6.52 -116.49 -0.76 -9.67 16 18 C 0.10 1.39 6.02 -4.59 -0.03 1.36 16 19 C -0.08 -1.36 5.41 -104.57 -0.57 -1.92 16 20 C -0.12 -1.97 9.69 -39.52 -0.38 -2.35 16 21 C -0.13 -2.21 10.04 -39.55 -0.40 -2.61 16 22 C -0.13 -2.49 10.05 -39.55 -0.40 -2.89 16 23 C -0.10 -1.98 8.36 -39.54 -0.33 -2.31 16 24 C -0.08 -1.42 4.97 -104.61 -0.52 -1.94 16 25 H 0.11 2.12 3.86 -51.92 -0.20 1.92 16 26 H 0.08 1.25 7.99 -51.93 -0.42 0.83 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.07 1.43 7.86 -51.93 -0.41 1.03 16 29 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.02 0.24 7.72 -51.93 -0.40 -0.16 16 32 H 0.34 3.42 8.89 -39.29 -0.35 3.07 16 33 H 0.07 0.78 7.92 -51.93 -0.41 0.37 16 34 H 0.04 0.59 6.82 -51.93 -0.35 0.23 16 35 H 0.11 1.44 7.98 -52.49 -0.42 1.02 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.11 1.92 8.06 -52.49 -0.42 1.49 16 38 H 0.16 3.83 4.68 -52.48 -0.25 3.58 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -27.96 304.50 -7.53 -35.49 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -4.74 Total: 8.50 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -3.50 Total: -8.28 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.54 Total: -54.43 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -4.41 Total: 14.13 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.96 -7.53 -35.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129448403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.041 kcal (2) G-P(sol) polarization free energy of solvation -27.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds