Wall clock time and date at job start Mon Mar 30 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37675 * 120.03629 * 2 1 4 4 C 1.39156 * 120.07640 * 179.97438 * 3 2 1 5 5 N 1.39189 * 119.92230 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99818 * 180.02562 * 5 4 3 7 7 C 1.53230 * 109.33899 * 187.25469 * 6 5 4 8 8 N 1.47080 * 108.52531 * 306.16795 * 7 6 5 9 9 C 1.36931 * 120.88364 * 231.18821 * 8 7 6 10 10 H 1.07994 * 120.00368 * 26.84029 * 9 8 7 11 11 C 1.38812 * 119.99721 * 206.56279 * 9 8 7 12 12 N 1.31619 * 120.00606 * 17.47328 * 11 9 8 13 13 Si 1.86807 * 119.99780 * 197.47555 * 11 9 8 14 14 H 1.48504 * 109.46947 * 94.38387 * 13 11 9 15 15 H 1.48508 * 109.46899 * 214.38152 * 13 11 9 16 16 H 1.48495 * 109.47303 * 334.38014 * 13 11 9 17 17 C 1.47082 * 118.23403 * 51.45931 * 8 7 6 18 18 C 1.46904 * 111.00295 * 304.30558 * 5 4 3 19 19 C 1.39197 * 120.15082 * 0.27776 * 4 3 2 20 20 C 1.37628 * 120.07120 * 359.43962 * 19 4 3 21 21 C 1.39790 * 120.04224 * 179.97438 * 2 1 3 22 22 C 1.43202 * 120.07209 * 0.04551 * 21 2 1 23 23 N 3.48515 * 80.42522 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47148 * 90.00655 * 1 2 3 25 25 H 1.09004 * 109.47152 * 209.99903 * 1 2 3 26 26 H 1.08995 * 109.47931 * 330.00168 * 1 2 3 27 27 H 1.07999 * 119.95934 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.49186 * 67.29415 * 6 5 4 29 29 H 1.09000 * 109.51153 * 307.23151 * 6 5 4 30 30 H 1.09004 * 109.63143 * 186.45915 * 7 6 5 31 31 H 1.09004 * 109.79153 * 65.97703 * 7 6 5 32 32 H 0.96993 * 120.00972 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.63087 * 68.24805 * 17 8 7 34 34 H 1.08996 * 109.63194 * 188.83501 * 17 8 7 35 35 H 1.09005 * 109.48966 * 292.70507 * 18 5 4 36 36 H 1.08995 * 109.49430 * 52.78559 * 18 5 4 37 37 H 1.07996 * 119.96093 * 179.70211 * 19 4 3 38 38 H 1.08004 * 120.03702 * 180.27621 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1919 0.0000 4 6 3.5876 1.1928 0.0005 5 7 4.2811 2.3997 0.0000 6 6 5.7325 2.1728 0.0001 7 6 6.4554 3.5116 0.1821 8 7 5.9722 4.4469 -0.8451 9 6 6.8511 5.1351 -1.6382 10 1 7.8289 4.7249 -1.8430 11 6 6.4830 6.3574 -2.1835 12 7 5.4599 7.0190 -1.6857 13 14 7.4399 7.0634 -3.6243 14 1 6.7736 6.6818 -4.8955 15 1 7.4824 8.5436 -3.5125 16 1 8.8241 6.5259 -3.6102 17 6 4.5202 4.6279 -0.9936 18 6 3.8737 3.2405 -1.1336 19 6 4.2876 -0.0103 -0.0048 20 6 3.6050 -1.2053 0.0011 21 6 2.2068 -1.2101 0.0005 22 6 1.4933 -2.4517 0.0001 23 7 0.9273 -3.4366 -0.0015 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3635 0.8899 0.5138 27 1 1.6560 2.1271 -0.0004 28 1 6.0306 1.7243 -0.9476 29 1 5.9962 1.5028 0.8184 30 1 7.5297 3.3661 0.0685 31 1 6.2431 3.9140 1.1727 32 1 5.2029 7.8733 -2.0665 33 1 4.1223 5.1338 -0.1139 34 1 4.3143 5.2207 -1.8848 35 1 4.1981 2.7770 -2.0653 36 1 2.7888 3.3452 -1.1374 37 1 5.3676 -0.0060 -0.0092 38 1 4.1487 -2.1385 0.0015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132575773.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:10 Heat of formation + Delta-G solvation = 88.972056 kcal Electronic energy + Delta-G solvation = -20122.959847 eV Core-core repulsion = 17159.259905 eV Total energy + Delta-G solvation = -2963.699943 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30389 -38.08866 -36.28559 -34.66899 -32.74190 -31.74933 -30.27750 -29.77612 -27.26194 -26.52181 -23.65691 -23.38049 -21.97122 -21.15342 -19.54014 -18.38669 -17.24733 -16.20433 -15.94005 -14.83973 -14.74557 -14.56530 -14.18573 -13.85603 -13.70081 -13.51875 -13.34759 -13.19087 -13.18004 -12.99447 -12.64573 -12.42603 -11.84500 -11.80753 -11.61991 -11.27022 -11.07437 -10.79050 -10.68979 -10.50403 -10.25652 -9.89082 -9.83103 -9.50796 -8.87507 -8.60163 -7.66768 -6.81999 -5.89071 -3.31018 0.81485 1.31068 2.65108 2.91458 3.32055 3.39805 3.40834 3.76221 3.92767 4.06878 4.41395 4.65188 4.71334 5.07148 5.24860 5.25627 5.28478 5.38343 5.43454 5.52018 5.60933 5.67675 5.80988 5.83233 5.93418 6.02728 6.06056 6.13784 6.19730 6.35394 6.37113 6.47945 6.65640 6.77002 7.04423 7.37247 7.44998 7.50094 7.51089 7.70298 8.31234 9.09139 9.71889 10.29108 11.20025 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.037037 B = 0.003917 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.815049 B = 7147.043665 C = 7435.087130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.007 4.007 3 C -0.154 4.154 4 C 0.168 3.832 5 N -0.482 5.482 6 C 0.036 3.964 7 C 0.145 3.855 8 N -0.595 5.595 9 C -0.256 4.256 10 H 0.068 0.932 11 C 0.003 3.997 12 N -0.903 5.903 13 Si 0.904 3.096 14 H -0.287 1.287 15 H -0.291 1.291 16 H -0.278 1.278 17 C 0.174 3.826 18 C 0.038 3.962 19 C -0.190 4.190 20 C -0.034 4.034 21 C -0.088 4.088 22 C 0.270 3.730 23 N -0.443 5.443 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.135 0.865 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.255 0.745 33 H 0.031 0.969 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.255 -11.289 2.932 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.010 4.010 3 C -0.175 4.175 4 C 0.065 3.935 5 N -0.194 5.194 6 C -0.092 4.092 7 C 0.019 3.981 8 N -0.319 5.319 9 C -0.385 4.385 10 H 0.086 0.914 11 C -0.196 4.196 12 N -0.547 5.547 13 Si 0.734 3.266 14 H -0.214 1.214 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.048 3.952 18 C -0.088 4.088 19 C -0.211 4.211 20 C -0.055 4.055 21 C -0.093 4.093 22 C -0.044 4.044 23 N -0.119 5.119 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.153 0.847 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.113 0.887 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.155 0.845 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.220 -12.250 3.281 14.125 hybrid contribution 0.895 0.452 -1.222 1.581 sum -5.326 -11.798 2.059 13.107 Atomic orbital electron populations 1.20902 0.90764 1.03226 1.02982 1.19669 0.95729 0.91120 0.94529 1.20593 0.92373 0.97711 1.06791 1.19481 0.93063 0.89847 0.91084 1.58702 1.07009 1.11855 1.41822 1.22922 0.85390 1.00554 1.00381 1.21022 0.96284 0.88083 0.92747 1.44164 1.01746 1.48283 1.37669 1.19209 0.97805 0.99003 1.22494 0.91403 1.25035 0.98639 0.95521 1.00360 1.70010 1.29609 1.14391 1.40674 0.86254 0.79583 0.78130 0.82682 1.21423 1.21704 1.20359 1.21050 0.82695 0.89464 1.01966 1.23237 0.99929 0.96928 0.88701 1.21278 1.00788 0.91198 1.07836 1.20915 0.91627 0.98350 0.94605 1.15775 0.92164 0.86247 1.15118 1.25720 0.93057 0.92743 0.92927 1.81218 1.08923 1.11190 1.10616 0.90412 0.91707 0.90431 0.84675 0.93471 0.90800 0.91958 0.95392 0.93469 0.95133 0.88681 0.93927 0.90991 0.84498 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.61 36.00 0.35 -0.76 16 2 C -0.01 -0.08 5.91 -104.25 -0.62 -0.70 16 3 C -0.15 -1.88 8.77 -39.45 -0.35 -2.23 16 4 C 0.17 2.28 5.64 -83.82 -0.47 1.81 16 5 N -0.48 -7.71 4.66 -170.52 -0.79 -8.51 16 6 C 0.04 0.56 4.29 -3.70 -0.02 0.54 16 7 C 0.15 2.81 6.69 -3.61 -0.02 2.79 16 8 N -0.60 -14.02 3.03 -171.74 -0.52 -14.54 16 9 C -0.26 -6.66 9.63 -15.06 -0.15 -6.80 16 10 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 11 C 0.00 0.09 4.93 -17.43 -0.09 0.00 16 12 N -0.90 -25.02 11.16 55.49 0.62 -24.40 16 13 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 C 0.17 3.87 5.45 -3.36 -0.02 3.85 16 18 C 0.04 0.66 5.44 -3.46 -0.02 0.64 16 19 C -0.19 -2.25 8.80 -39.45 -0.35 -2.60 16 20 C -0.03 -0.36 9.75 -39.21 -0.38 -0.74 16 21 C -0.09 -1.01 5.74 -106.80 -0.61 -1.62 16 22 C 0.27 3.35 13.79 -22.47 -0.31 3.04 16 23 N -0.44 -6.28 18.54 41.84 0.78 -5.50 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.60 7.09 -51.93 -0.37 0.24 16 26 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.14 1.56 7.13 -52.49 -0.37 1.19 16 28 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 29 H 0.07 0.97 6.88 -51.93 -0.36 0.62 16 30 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 2.35 6.11 -51.93 -0.32 2.04 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.10 6.64 -51.93 -0.34 0.76 16 37 H 0.14 1.49 5.77 -52.49 -0.30 1.18 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -28.67 312.99 -8.25 -36.92 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.96 Total: -1.68 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -3.05 Total: -2.78 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.08 Total: -52.95 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.67 -8.25 -36.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132575773.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.889 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds