Wall clock time and date at job start Mon Mar 30 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37675 * 120.03629 * 2 1 4 4 C 1.39156 * 120.07640 * 179.97438 * 3 2 1 5 5 N 1.39189 * 119.92230 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99818 * 180.02562 * 5 4 3 7 7 C 1.53230 * 109.33899 * 187.25469 * 6 5 4 8 8 N 1.47080 * 108.52531 * 306.16795 * 7 6 5 9 9 C 1.36931 * 120.88364 * 231.18821 * 8 7 6 10 10 H 1.07994 * 120.00368 * 26.84029 * 9 8 7 11 11 C 1.38812 * 119.99721 * 206.56279 * 9 8 7 12 12 N 1.31619 * 120.00606 * 17.47328 * 11 9 8 13 13 Si 1.86807 * 119.99780 * 197.47555 * 11 9 8 14 14 H 1.48504 * 109.46947 * 94.38387 * 13 11 9 15 15 H 1.48508 * 109.46899 * 214.38152 * 13 11 9 16 16 H 1.48495 * 109.47303 * 334.38014 * 13 11 9 17 17 C 1.47082 * 118.23403 * 51.45931 * 8 7 6 18 18 C 1.46904 * 111.00295 * 304.30558 * 5 4 3 19 19 C 1.39197 * 120.15082 * 0.27776 * 4 3 2 20 20 C 1.37628 * 120.07120 * 359.43962 * 19 4 3 21 21 C 1.39790 * 120.04224 * 179.97438 * 2 1 3 22 22 C 1.43202 * 120.07209 * 0.04551 * 21 2 1 23 23 N 3.48515 * 80.42522 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47148 * 90.00655 * 1 2 3 25 25 H 1.09004 * 109.47152 * 209.99903 * 1 2 3 26 26 H 1.08995 * 109.47931 * 330.00168 * 1 2 3 27 27 H 1.07999 * 119.95934 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.49186 * 67.29415 * 6 5 4 29 29 H 1.09000 * 109.51153 * 307.23151 * 6 5 4 30 30 H 1.09004 * 109.63143 * 186.45915 * 7 6 5 31 31 H 1.09004 * 109.79153 * 65.97703 * 7 6 5 32 32 H 0.96993 * 120.00972 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.63087 * 68.24805 * 17 8 7 34 34 H 1.08996 * 109.63194 * 188.83501 * 17 8 7 35 35 H 1.09005 * 109.48966 * 292.70507 * 18 5 4 36 36 H 1.08995 * 109.49430 * 52.78559 * 18 5 4 37 37 H 1.07996 * 119.96093 * 179.70211 * 19 4 3 38 38 H 1.08004 * 120.03702 * 180.27621 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1919 0.0000 4 6 3.5876 1.1928 0.0005 5 7 4.2811 2.3997 0.0000 6 6 5.7325 2.1728 0.0001 7 6 6.4554 3.5116 0.1821 8 7 5.9722 4.4469 -0.8451 9 6 6.8511 5.1351 -1.6382 10 1 7.8289 4.7249 -1.8430 11 6 6.4830 6.3574 -2.1835 12 7 5.4599 7.0190 -1.6857 13 14 7.4399 7.0634 -3.6243 14 1 6.7736 6.6818 -4.8955 15 1 7.4824 8.5436 -3.5125 16 1 8.8241 6.5259 -3.6102 17 6 4.5202 4.6279 -0.9936 18 6 3.8737 3.2405 -1.1336 19 6 4.2876 -0.0103 -0.0048 20 6 3.6050 -1.2053 0.0011 21 6 2.2068 -1.2101 0.0005 22 6 1.4933 -2.4517 0.0001 23 7 0.9273 -3.4366 -0.0015 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3635 0.8899 0.5138 27 1 1.6560 2.1271 -0.0004 28 1 6.0306 1.7243 -0.9476 29 1 5.9962 1.5028 0.8184 30 1 7.5297 3.3661 0.0685 31 1 6.2431 3.9140 1.1727 32 1 5.2029 7.8733 -2.0665 33 1 4.1223 5.1338 -0.1139 34 1 4.3143 5.2207 -1.8848 35 1 4.1981 2.7770 -2.0653 36 1 2.7888 3.3452 -1.1374 37 1 5.3676 -0.0060 -0.0092 38 1 4.1487 -2.1385 0.0015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132575773.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:09 Heat of formation + Delta-G solvation = 73.230912 kcal Electronic energy + Delta-G solvation = -20123.642435 eV Core-core repulsion = 17159.259905 eV Total energy + Delta-G solvation = -2964.382530 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36603 -39.30372 -37.45211 -36.15603 -33.73849 -33.37272 -31.72627 -31.05681 -28.18865 -28.07353 -25.23411 -24.71618 -23.17907 -22.25456 -21.00814 -19.41426 -18.84248 -17.63857 -16.97916 -16.64066 -15.85877 -15.67935 -15.37286 -15.25193 -15.10297 -14.95313 -14.52969 -14.48002 -14.19024 -14.02378 -13.72206 -13.30782 -13.19932 -13.06617 -12.82446 -12.70349 -12.58941 -12.34310 -12.16758 -12.08280 -11.87936 -11.52837 -11.50389 -10.67225 -10.54170 -9.74491 -8.82633 -8.67152 -7.87665 -5.31820 -0.14614 0.43230 1.49022 1.50871 1.59378 1.67210 1.92944 2.51818 2.71895 2.95616 3.01934 3.28773 3.65570 3.79729 3.87007 4.09875 4.28785 4.30897 4.39080 4.45945 4.56172 4.58664 4.63780 4.72974 4.76152 4.84504 4.93092 4.97572 5.10914 5.16076 5.26676 5.32686 5.40527 5.46664 5.63324 5.67439 5.73728 6.06872 6.35767 6.37901 6.52031 7.13678 7.83492 8.36679 9.19437 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.037037 B = 0.003917 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.815049 B = 7147.043665 C = 7435.087130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.003 4.003 3 C -0.157 4.157 4 C 0.149 3.851 5 N -0.493 5.493 6 C 0.048 3.952 7 C 0.141 3.859 8 N -0.615 5.615 9 C -0.263 4.263 10 H 0.070 0.930 11 C -0.049 4.049 12 N -0.935 5.935 13 Si 0.966 3.034 14 H -0.286 1.286 15 H -0.297 1.297 16 H -0.268 1.268 17 C 0.182 3.818 18 C 0.056 3.944 19 C -0.188 4.188 20 C -0.025 4.025 21 C -0.089 4.089 22 C 0.288 3.712 23 N -0.474 5.474 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.139 0.861 28 H 0.049 0.951 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.017 0.983 32 H 0.251 0.749 33 H 0.003 0.997 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 -13.250 2.875 14.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.007 4.007 3 C -0.177 4.177 4 C 0.048 3.952 5 N -0.206 5.206 6 C -0.080 4.080 7 C 0.015 3.985 8 N -0.339 5.339 9 C -0.393 4.393 10 H 0.088 0.912 11 C -0.245 4.245 12 N -0.581 5.581 13 Si 0.794 3.206 14 H -0.213 1.213 15 H -0.224 1.224 16 H -0.193 1.193 17 C 0.056 3.944 18 C -0.070 4.070 19 C -0.208 4.208 20 C -0.046 4.046 21 C -0.094 4.094 22 C -0.025 4.025 23 N -0.151 5.151 24 H 0.105 0.895 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.157 0.843 28 H 0.067 0.933 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.110 0.890 37 H 0.167 0.833 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.137 -14.263 3.241 15.862 hybrid contribution 0.844 0.987 -1.139 1.728 sum -5.293 -13.277 2.102 14.446 Atomic orbital electron populations 1.20955 0.89379 1.03779 1.03751 1.19832 0.96747 0.90569 0.93520 1.20670 0.92036 0.98317 1.06718 1.19536 0.93541 0.89317 0.92850 1.58638 1.07207 1.13275 1.41468 1.22766 0.85100 0.98439 1.01712 1.21177 0.97248 0.89059 0.91015 1.44450 1.02024 1.48721 1.38669 1.19543 0.98201 0.99052 1.22473 0.91192 1.25749 0.99852 0.96129 1.02721 1.70163 1.31304 1.14601 1.42000 0.85276 0.78796 0.76802 0.79704 1.21297 1.22403 1.19278 1.20784 0.82675 0.91856 0.99119 1.22857 1.00535 0.94296 0.89317 1.21402 1.01441 0.90760 1.07240 1.21146 0.91311 0.99031 0.93157 1.15907 0.92617 0.85856 1.15036 1.25754 0.92321 0.92447 0.91999 1.81248 1.09895 1.12192 1.11724 0.89469 0.91963 0.89101 0.84312 0.93313 0.87612 0.91351 0.96507 0.94031 0.97889 0.91876 0.94497 0.88959 0.83261 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 9.61 71.23 0.68 -1.22 16 2 C 0.00 -0.07 5.91 -19.62 -0.12 -0.18 16 3 C -0.16 -3.47 8.77 22.36 0.20 -3.27 16 4 C 0.15 3.68 5.64 38.42 0.22 3.90 16 5 N -0.49 -14.99 4.66 -693.41 -3.23 -18.23 16 6 C 0.05 1.40 4.29 86.38 0.37 1.77 16 7 C 0.14 5.37 6.69 86.35 0.58 5.95 16 8 N -0.61 -29.34 3.03 -697.25 -2.11 -31.45 16 9 C -0.26 -13.82 9.63 84.03 0.81 -13.01 16 10 H 0.07 3.57 7.88 -2.91 -0.02 3.54 16 11 C -0.05 -2.64 4.93 84.86 0.42 -2.22 16 12 N -0.93 -53.48 11.16 21.65 0.24 -53.24 16 13 Si 0.97 43.33 29.59 68.60 2.03 45.36 16 14 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 17 C 0.18 8.29 5.45 86.50 0.47 8.76 16 18 C 0.06 1.93 5.44 86.54 0.47 2.40 16 19 C -0.19 -3.82 8.80 22.36 0.20 -3.63 16 20 C -0.03 -0.45 9.75 22.51 0.22 -0.23 16 21 C -0.09 -1.78 5.74 -21.27 -0.12 -1.90 16 22 C 0.29 6.45 13.79 88.33 1.22 7.67 16 23 N -0.47 -12.54 18.54 19.00 0.35 -12.19 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.02 7.09 -2.39 -0.02 1.00 16 26 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 27 H 0.14 2.93 7.13 -2.91 -0.02 2.91 16 28 H 0.05 1.43 7.79 -2.39 -0.02 1.41 16 29 H 0.11 2.44 6.88 -2.39 -0.02 2.43 16 30 H 0.07 2.47 7.95 -2.38 -0.02 2.45 16 31 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 33 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.06 3.26 6.11 -2.39 -0.01 3.25 16 35 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.09 2.75 6.64 -2.39 -0.02 2.73 16 37 H 0.15 2.66 5.77 -2.91 -0.02 2.64 16 38 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -62.55 312.99 3.96 -58.59 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 1.07 Total: 6.37 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.61 Total: 4.78 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -4.75 Total: -115.10 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -62.55 3.96 -58.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132575773.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.821 kcal (2) G-P(sol) polarization free energy of solvation -62.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds