Wall clock time and date at job start Mon Mar 30 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.45206 * 109.47226 * 239.99648 * 2 1 3 6 6 C 1.34644 * 116.99182 * 60.00595 * 5 2 1 7 7 O 1.21507 * 120.00513 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99419 * 180.02562 * 6 5 2 9 9 C 1.47021 * 125.65090 * 0.02562 * 8 6 5 10 10 C 1.54328 * 107.27246 * 181.02567 * 9 8 6 11 11 C 1.55155 * 102.93920 * 22.19601 * 10 9 8 12 12 C 1.53007 * 111.00220 * 206.42187 * 11 10 9 13 13 O 1.42897 * 111.00764 * 82.61112 * 11 10 9 14 14 C 1.34929 * 117.00240 * 179.97438 * 13 11 10 15 15 H 1.07999 * 119.99793 * 359.97438 * 14 13 11 16 16 C 1.38637 * 120.00064 * 179.97438 * 14 13 11 17 17 N 1.31581 * 119.99644 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99981 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47062 * 89.99795 * 18 16 14 20 20 H 1.48497 * 109.46685 * 209.99720 * 18 16 14 21 21 H 1.48498 * 109.46655 * 329.99530 * 18 16 14 22 22 C 1.47424 * 125.64558 * 179.71524 * 8 6 5 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 32 32 H 1.09002 * 109.88625 * 300.44553 * 9 8 6 33 33 H 1.08999 * 109.88185 * 61.45561 * 9 8 6 34 34 H 1.08997 * 110.71886 * 140.55737 * 10 9 8 35 35 H 1.08995 * 110.72143 * 263.83058 * 10 9 8 36 36 H 1.09002 * 109.46615 * 59.99871 * 12 11 10 37 37 H 1.09001 * 109.46833 * 179.97438 * 12 11 10 38 38 H 1.08991 * 109.47317 * 300.00339 * 12 11 10 39 39 H 0.97006 * 119.99844 * 180.02562 * 17 16 14 40 40 H 1.09002 * 110.36816 * 274.74274 * 22 8 6 41 41 H 1.08998 * 110.36740 * 37.06148 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0140 -0.6846 -1.1856 6 6 1.6523 -0.1728 -2.3772 7 8 0.9510 0.8183 -2.4253 8 7 2.0672 -0.7606 -3.5169 9 6 2.9136 -1.9596 -3.6037 10 6 3.1488 -2.2470 -5.1017 11 6 2.8910 -0.8681 -5.7646 12 6 2.4344 -1.0339 -7.2155 13 8 4.0515 -0.0377 -5.6876 14 6 3.9603 1.1943 -6.2301 15 1 3.0393 1.5124 -6.6959 16 6 5.0489 2.0518 -6.1897 17 7 4.9600 3.2531 -6.7193 18 14 6.6421 1.5013 -5.3848 19 1 7.5091 0.8486 -6.3985 20 1 7.3442 2.6812 -4.8190 21 1 6.3395 0.5367 -4.2971 22 6 1.7423 -0.3114 -4.8829 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -0.2075 2.1393 32 1 3.8666 -1.7775 -3.1071 33 1 2.4079 -2.8048 -3.1367 34 1 4.1743 -2.5727 -5.2754 35 1 2.4399 -2.9895 -5.4679 36 1 1.5109 -1.6125 -7.2417 37 1 2.2604 -0.0522 -7.6560 38 1 3.2059 -1.5552 -7.7819 39 1 5.7218 3.8530 -6.6914 40 1 0.7840 -0.7230 -5.1998 41 1 1.7224 0.7774 -4.9295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135373754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:31 Heat of formation + Delta-G solvation = -111.316936 kcal Electronic energy + Delta-G solvation = -22494.388977 eV Core-core repulsion = 19182.402181 eV Total energy + Delta-G solvation = -3311.986796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.50080 -38.87668 -36.62238 -35.29600 -33.83731 -32.08230 -31.05137 -29.22174 -27.39209 -27.28397 -26.29677 -24.67552 -22.94281 -21.36976 -19.46456 -19.11395 -17.64644 -17.26742 -16.46633 -16.13642 -15.72934 -14.86327 -14.62886 -14.16830 -13.91581 -13.74147 -13.59765 -12.80785 -12.77706 -12.49352 -12.42511 -12.16514 -12.05470 -11.83304 -11.81699 -11.74504 -11.67659 -11.25487 -11.21596 -11.12810 -10.99208 -10.79089 -10.44856 -10.19279 -9.93548 -9.78745 -9.69512 -9.13070 -8.34179 -8.12464 -5.99066 -3.66637 2.41279 3.22859 3.41213 3.44009 3.60362 4.17949 4.55556 4.75411 4.77779 4.81156 4.95310 4.96587 5.14952 5.34385 5.39145 5.45477 5.55554 5.59191 5.64490 5.68615 5.78893 5.86387 5.89974 5.93213 5.99150 6.07410 6.14688 6.20907 6.28446 6.34840 6.44731 6.47524 6.55205 6.71972 6.73629 6.86725 7.87955 7.92635 8.36790 8.70939 9.40645 9.91381 11.13231 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018499 B = 0.006366 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.240407 B = 4396.988428 C = 5026.096430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.135 3.865 3 C -0.185 4.185 4 C -0.138 4.138 5 O -0.364 6.364 6 C 0.667 3.333 7 O -0.570 6.570 8 N -0.591 5.591 9 C 0.112 3.888 10 C -0.121 4.121 11 C 0.121 3.879 12 C -0.159 4.159 13 O -0.307 6.307 14 C -0.354 4.354 15 H 0.084 0.916 16 C 0.047 3.953 17 N -0.911 5.911 18 Si 0.902 3.098 19 H -0.282 1.282 20 H -0.292 1.292 21 H -0.266 1.266 22 C 0.102 3.898 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.269 0.731 40 H 0.064 0.936 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 -11.642 10.966 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.098 3.902 3 C -0.242 4.242 4 C -0.196 4.196 5 O -0.280 6.280 6 C 0.422 3.578 7 O -0.459 6.459 8 N -0.331 5.331 9 C -0.011 4.011 10 C -0.159 4.159 11 C 0.079 3.921 12 C -0.217 4.217 13 O -0.223 6.223 14 C -0.432 4.432 15 H 0.101 0.899 16 C -0.151 4.151 17 N -0.556 5.556 18 Si 0.730 3.270 19 H -0.208 1.208 20 H -0.219 1.219 21 H -0.190 1.190 22 C -0.019 4.019 23 H 0.107 0.893 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.647 -11.221 11.189 17.184 hybrid contribution 0.601 0.054 0.323 0.684 sum -6.047 -11.167 11.512 17.140 Atomic orbital electron populations 1.22504 0.94272 1.02574 1.04512 1.22000 0.94166 0.92366 0.81675 1.22519 1.01767 0.95362 1.04521 1.21834 1.02276 1.00839 0.94610 1.86292 1.71773 1.56290 1.13604 1.17450 0.79018 0.81104 0.80225 1.90874 1.42037 1.26502 1.86536 1.46988 1.52367 1.29947 1.03772 1.21943 0.94846 0.86669 0.97641 1.22692 1.03393 0.96458 0.93325 1.22159 0.86741 0.90110 0.93071 1.22123 1.00274 1.03005 0.96258 1.85342 1.31353 1.26337 1.79230 1.20267 1.00757 0.87886 1.34328 0.89863 1.24256 0.98356 0.94556 0.97892 1.69680 1.31698 1.06896 1.47284 0.86230 0.82892 0.77741 0.80119 1.20785 1.21859 1.19037 1.23035 0.97840 1.02582 0.78482 0.89284 0.91422 0.92456 0.91466 0.92115 0.89092 0.91705 0.91517 0.90382 0.91253 0.91867 0.89201 0.89815 0.93041 0.90993 0.91816 0.92157 0.91738 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 8.37 37.16 0.31 -2.02 16 2 C 0.13 1.88 1.13 -90.62 -0.10 1.78 16 3 C -0.18 -2.69 8.37 37.15 0.31 -2.38 16 4 C -0.14 -1.43 8.85 37.16 0.33 -1.10 16 5 O -0.36 -6.21 9.49 -40.33 -0.38 -6.59 16 6 C 0.67 13.07 7.93 54.06 0.43 13.49 16 7 O -0.57 -12.24 12.14 -19.28 -0.23 -12.47 16 8 N -0.59 -11.19 3.32 -176.15 -0.59 -11.78 16 9 C 0.11 1.77 6.89 -3.06 -0.02 1.75 16 10 C -0.12 -1.81 6.15 -24.89 -0.15 -1.97 16 11 C 0.12 2.33 0.95 -88.34 -0.08 2.25 16 12 C -0.16 -2.70 8.58 37.16 0.32 -2.38 16 13 O -0.31 -7.67 8.40 -16.51 -0.14 -7.81 16 14 C -0.35 -10.02 8.79 30.88 0.27 -9.75 16 15 H 0.08 2.45 6.83 -52.49 -0.36 2.09 16 16 C 0.05 1.38 5.49 -17.51 -0.10 1.28 16 17 N -0.91 -28.13 13.96 55.48 0.77 -27.36 16 18 Si 0.90 23.26 28.62 -169.99 -4.86 18.39 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 22 C 0.10 1.98 5.99 -2.40 -0.01 1.96 16 23 H 0.09 1.39 5.88 -51.93 -0.31 1.09 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 1.62 5.88 -51.93 -0.31 1.32 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 36 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 37 H 0.07 1.38 6.72 -51.93 -0.35 1.03 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.27 7.82 8.31 -40.82 -0.34 7.48 16 40 H 0.06 1.08 7.99 -51.93 -0.41 0.66 16 41 H 0.09 2.16 7.24 -51.93 -0.38 1.78 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -33.23 329.27 -5.70 -38.93 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.73 Total: 0.80 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 1.50 Total: 2.92 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.19 Total: -39.14 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.76 Total: -26.87 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.86 Total: 18.39 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.23 -5.70 -38.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135373754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.384 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds