Wall clock time and date at job start Mon Mar 30 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.45206 * 109.47226 * 239.99648 * 2 1 3 6 6 C 1.34644 * 116.99182 * 60.00595 * 5 2 1 7 7 O 1.21507 * 120.00513 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99419 * 180.02562 * 6 5 2 9 9 C 1.47021 * 125.65090 * 0.02562 * 8 6 5 10 10 C 1.54328 * 107.27246 * 181.02567 * 9 8 6 11 11 C 1.55155 * 102.93920 * 22.19601 * 10 9 8 12 12 C 1.53007 * 111.00220 * 206.42187 * 11 10 9 13 13 O 1.42897 * 111.00764 * 82.61112 * 11 10 9 14 14 C 1.34929 * 117.00240 * 179.97438 * 13 11 10 15 15 H 1.07999 * 119.99793 * 359.97438 * 14 13 11 16 16 C 1.38637 * 120.00064 * 179.97438 * 14 13 11 17 17 N 1.31581 * 119.99644 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99981 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47062 * 89.99795 * 18 16 14 20 20 H 1.48497 * 109.46685 * 209.99720 * 18 16 14 21 21 H 1.48498 * 109.46655 * 329.99530 * 18 16 14 22 22 C 1.47424 * 125.64558 * 179.71524 * 8 6 5 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 32 32 H 1.09002 * 109.88625 * 300.44553 * 9 8 6 33 33 H 1.08999 * 109.88185 * 61.45561 * 9 8 6 34 34 H 1.08997 * 110.71886 * 140.55737 * 10 9 8 35 35 H 1.08995 * 110.72143 * 263.83058 * 10 9 8 36 36 H 1.09002 * 109.46615 * 59.99871 * 12 11 10 37 37 H 1.09001 * 109.46833 * 179.97438 * 12 11 10 38 38 H 1.08991 * 109.47317 * 300.00339 * 12 11 10 39 39 H 0.97006 * 119.99844 * 180.02562 * 17 16 14 40 40 H 1.09002 * 110.36816 * 274.74274 * 22 8 6 41 41 H 1.08998 * 110.36740 * 37.06148 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0140 -0.6846 -1.1856 6 6 1.6523 -0.1728 -2.3772 7 8 0.9510 0.8183 -2.4253 8 7 2.0672 -0.7606 -3.5169 9 6 2.9136 -1.9596 -3.6037 10 6 3.1488 -2.2470 -5.1017 11 6 2.8910 -0.8681 -5.7646 12 6 2.4344 -1.0339 -7.2155 13 8 4.0515 -0.0377 -5.6876 14 6 3.9603 1.1943 -6.2301 15 1 3.0393 1.5124 -6.6959 16 6 5.0489 2.0518 -6.1897 17 7 4.9600 3.2531 -6.7193 18 14 6.6421 1.5013 -5.3848 19 1 7.5091 0.8486 -6.3985 20 1 7.3442 2.6812 -4.8190 21 1 6.3395 0.5367 -4.2971 22 6 1.7423 -0.3114 -4.8829 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -0.2075 2.1393 32 1 3.8666 -1.7775 -3.1071 33 1 2.4079 -2.8048 -3.1367 34 1 4.1743 -2.5727 -5.2754 35 1 2.4399 -2.9895 -5.4679 36 1 1.5109 -1.6125 -7.2417 37 1 2.2604 -0.0522 -7.6560 38 1 3.2059 -1.5552 -7.7819 39 1 5.7218 3.8530 -6.6914 40 1 0.7840 -0.7230 -5.1998 41 1 1.7224 0.7774 -4.9295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135373754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:30 Heat of formation + Delta-G solvation = -133.859255 kcal Electronic energy + Delta-G solvation = -22495.366485 eV Core-core repulsion = 19182.402181 eV Total energy + Delta-G solvation = -3312.964304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.89004 -40.36065 -38.10608 -36.96595 -35.06797 -34.10373 -32.71377 -30.57849 -28.39153 -28.29669 -27.75025 -26.79079 -24.32851 -22.62870 -21.10541 -20.43232 -19.50228 -18.95908 -17.89557 -17.47996 -17.34727 -16.24060 -16.15436 -15.75840 -15.30647 -15.19103 -14.80112 -14.62293 -14.26907 -13.95169 -13.84224 -13.46761 -13.34616 -13.20034 -13.08545 -12.91981 -12.90274 -12.86954 -12.65958 -12.47696 -12.27564 -12.26675 -12.10434 -11.86768 -11.53418 -11.40747 -11.12659 -11.03290 -10.40471 -9.69679 -8.24113 -5.91673 1.07236 1.34243 1.37759 1.54997 1.74736 2.42112 2.90212 3.07898 3.24490 3.62274 3.71087 3.75238 3.78716 3.93706 4.03401 4.29408 4.44494 4.48866 4.58930 4.60999 4.64760 4.71827 4.73810 4.75070 4.81442 4.86664 4.90037 4.94494 5.06868 5.13648 5.18396 5.26233 5.27414 5.35196 5.41948 5.45068 5.68431 6.18684 6.45011 7.16137 7.25524 7.83645 8.91800 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018499 B = 0.006366 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.240407 B = 4396.988428 C = 5026.096430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.120 3.880 3 C -0.183 4.183 4 C -0.130 4.130 5 O -0.364 6.364 6 C 0.659 3.341 7 O -0.600 6.600 8 N -0.600 5.600 9 C 0.107 3.893 10 C -0.106 4.106 11 C 0.100 3.900 12 C -0.151 4.151 13 O -0.326 6.326 14 C -0.333 4.333 15 H 0.055 0.945 16 C -0.019 4.019 17 N -0.957 5.957 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.267 1.267 22 C 0.106 3.894 23 H 0.054 0.946 24 H 0.095 0.905 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.270 0.730 40 H 0.095 0.905 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 -14.854 12.658 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.084 3.916 3 C -0.240 4.240 4 C -0.187 4.187 5 O -0.279 6.279 6 C 0.414 3.586 7 O -0.492 6.492 8 N -0.340 5.340 9 C -0.014 4.014 10 C -0.143 4.143 11 C 0.059 3.941 12 C -0.209 4.209 13 O -0.242 6.242 14 C -0.412 4.412 15 H 0.073 0.927 16 C -0.211 4.211 17 N -0.605 5.605 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.216 1.216 21 H -0.192 1.192 22 C -0.016 4.016 23 H 0.073 0.927 24 H 0.113 0.887 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.147 0.853 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.623 -14.480 12.889 20.485 hybrid contribution 0.442 1.024 -0.161 1.127 sum -6.181 -13.456 12.728 19.526 Atomic orbital electron populations 1.22436 0.93434 1.03200 1.04154 1.22505 0.95107 0.92207 0.81818 1.22493 1.01205 0.96247 1.04056 1.21860 1.02176 1.01409 0.93287 1.86305 1.71709 1.56429 1.13439 1.17701 0.78870 0.80882 0.81124 1.90865 1.43364 1.27805 1.87146 1.47184 1.52663 1.30850 1.03320 1.22187 0.94210 0.86454 0.98583 1.22798 1.05313 0.94241 0.91951 1.22732 0.85156 0.91376 0.94807 1.22070 1.02585 1.01935 0.94301 1.85265 1.34701 1.25125 1.79092 1.20170 0.99313 0.89205 1.32516 0.92726 1.25104 1.01969 0.94836 0.99230 1.69802 1.32810 1.08258 1.49583 0.85234 0.79075 0.77224 0.79256 1.19201 1.21625 1.19161 1.22938 0.99549 0.99616 0.79452 0.92703 0.88664 0.91263 0.88338 0.92883 0.93091 0.90502 0.91708 0.87521 0.92607 0.88188 0.88422 0.85261 0.88763 0.94367 0.90948 0.92110 0.88694 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.24 8.37 71.98 0.60 -3.63 16 2 C 0.12 3.17 1.13 -10.79 -0.01 3.15 16 3 C -0.18 -5.29 8.37 71.98 0.60 -4.69 16 4 C -0.13 -2.27 8.85 71.98 0.64 -1.64 16 5 O -0.36 -12.10 9.49 -55.53 -0.53 -12.63 16 6 C 0.66 26.06 7.93 129.79 1.03 27.09 16 7 O -0.60 -26.95 12.14 19.82 0.24 -26.71 16 8 N -0.60 -22.37 3.32 -941.62 -3.13 -25.50 16 9 C 0.11 3.10 6.89 86.73 0.60 3.69 16 10 C -0.11 -2.78 6.15 31.78 0.20 -2.58 16 11 C 0.10 3.73 0.95 -9.32 -0.01 3.72 16 12 C -0.15 -4.90 8.58 71.98 0.62 -4.28 16 13 O -0.33 -16.34 8.40 -81.98 -0.69 -17.03 16 14 C -0.33 -19.51 8.79 67.92 0.60 -18.92 16 15 H 0.06 3.43 6.83 -2.91 -0.02 3.41 16 16 C -0.02 -1.16 5.49 84.83 0.47 -0.69 16 17 N -0.96 -61.31 13.96 21.61 0.30 -61.01 16 18 Si 0.97 48.71 28.62 68.60 1.96 50.67 16 19 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 21 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 22 C 0.11 4.13 5.99 86.94 0.52 4.65 16 23 H 0.05 1.73 5.88 -2.39 -0.01 1.72 16 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.90 5.88 -2.39 -0.01 1.88 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.13 2.28 8.04 -2.39 -0.02 2.26 16 36 H 0.09 2.22 8.07 -2.39 -0.02 2.20 16 37 H 0.04 1.48 6.72 -2.39 -0.02 1.46 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.27 16.25 8.31 -92.70 -0.77 15.48 16 40 H 0.10 3.05 7.99 -2.39 -0.02 3.03 16 41 H 0.04 2.05 7.24 -2.39 -0.02 2.04 16 Total: -1.00 -77.12 329.27 5.00 -72.12 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 1.00 Total: 14.22 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 5.84 Total: 5.88 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -2.83 Total: -86.51 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -0.98 Total: -56.37 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 1.96 Total: 50.67 kcal Total: -77.12 5.00 -72.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135373754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.743 kcal (2) G-P(sol) polarization free energy of solvation -77.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds