Wall clock time and date at job start Mon Mar 30 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52994 * 109.47286 * 239.99698 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.47424 * 125.65218 * 359.42538 * 8 6 5 10 10 C 1.55128 * 104.72539 * 155.81287 * 9 8 6 11 11 C 1.55161 * 101.48399 * 37.29371 * 10 9 8 12 12 C 1.53004 * 110.87218 * 82.76739 * 11 10 9 13 13 O 1.42902 * 110.71842 * 205.97042 * 11 10 9 14 14 C 1.34930 * 116.99850 * 174.97644 * 13 11 10 15 15 H 1.08002 * 120.00047 * 359.97438 * 14 13 11 16 16 C 1.38631 * 119.99766 * 179.97438 * 14 13 11 17 17 N 1.31578 * 120.00099 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 120.00357 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46908 * 89.99819 * 18 16 14 20 20 H 1.48493 * 109.47155 * 210.00081 * 18 16 14 21 21 H 1.48500 * 109.46586 * 329.99965 * 18 16 14 22 22 C 1.47028 * 125.64541 * 179.72566 * 8 6 5 23 23 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 24 24 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 25 25 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 28 28 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 29 29 H 1.08995 * 109.47307 * 299.99583 * 4 2 1 30 30 H 1.08999 * 109.47211 * 60.00515 * 4 2 1 31 31 H 1.09010 * 109.46887 * 180.02562 * 4 2 1 32 32 H 1.09007 * 110.36161 * 274.74556 * 9 8 6 33 33 H 1.09000 * 110.36555 * 37.06212 * 9 8 6 34 34 H 1.08994 * 111.19165 * 279.18842 * 10 9 8 35 35 H 1.09000 * 110.93969 * 155.28462 * 10 9 8 36 36 H 1.08997 * 109.47169 * 304.92957 * 12 11 10 37 37 H 1.08998 * 109.47052 * 64.93625 * 12 11 10 38 38 H 1.08999 * 109.46821 * 184.93242 * 12 11 10 39 39 H 0.97010 * 120.00514 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.87980 * 300.44492 * 22 8 6 41 41 H 1.08998 * 109.88121 * 61.45431 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 2.9172 -2.1400 3.5013 10 6 2.5898 -3.0303 4.7287 11 6 2.4017 -4.4186 4.0619 12 6 3.7515 -5.1038 3.8391 13 8 1.5411 -5.2448 4.8485 14 6 1.2063 -6.4461 4.3333 15 1 1.5859 -6.7441 3.3671 16 6 0.3750 -7.2979 5.0442 17 7 0.0490 -8.4695 4.5421 18 14 -0.2811 -6.7828 6.7157 19 1 -1.5723 -6.0701 6.5424 20 1 -0.4899 -7.9877 7.5582 21 1 0.6975 -5.8812 7.3751 22 6 1.7385 -4.0674 2.7134 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6768 -1.7489 -1.2491 30 1 1.6768 -0.2075 -2.1392 31 1 3.1301 -0.7216 -1.2488 32 1 3.9694 -2.2327 3.2321 33 1 2.6687 -1.0995 3.7107 34 1 1.6722 -2.7044 5.2183 35 1 3.4219 -3.0446 5.4326 36 1 4.4023 -4.4458 3.2635 37 1 4.2130 -5.3192 4.8028 38 1 3.6005 -6.0346 3.2924 39 1 -0.5330 -9.0655 5.0394 40 1 0.6580 -4.1902 2.7885 41 1 2.1307 -4.7110 1.9260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135373775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:34 Heat of formation + Delta-G solvation = -112.134425 kcal Electronic energy + Delta-G solvation = -22132.015467 eV Core-core repulsion = 18819.993222 eV Total energy + Delta-G solvation = -3312.022245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.67025 -39.00156 -36.78719 -35.53522 -33.98647 -32.08584 -30.99674 -28.97117 -27.51050 -27.43047 -26.46821 -24.84917 -23.11032 -21.53276 -19.35282 -19.24835 -17.76428 -17.28281 -16.55292 -16.35305 -15.66120 -14.93832 -14.86028 -14.32372 -14.05628 -13.71339 -13.41745 -13.26007 -12.78536 -12.61470 -12.47767 -12.25821 -12.07630 -11.96296 -11.91336 -11.80500 -11.63250 -11.37305 -11.32103 -11.22225 -11.20653 -10.75236 -10.43726 -10.34186 -9.92325 -9.89119 -9.74146 -9.16901 -8.45652 -8.23484 -6.01445 -3.70585 2.24140 3.04747 3.40662 3.44344 3.58851 4.00512 4.53747 4.64247 4.67742 4.77912 4.82567 4.85722 5.07372 5.32615 5.34298 5.40557 5.43130 5.53248 5.55045 5.57754 5.65189 5.68873 5.76079 5.78939 5.86324 6.09470 6.21151 6.21915 6.25155 6.25948 6.33613 6.40312 6.48943 6.54421 6.73561 6.85231 7.71405 7.90873 8.33912 8.53942 9.37777 9.87313 11.10654 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029395 B = 0.004582 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.327553 B = 6109.030397 C = 6330.713306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.365 6.365 6 C 0.664 3.336 7 O -0.568 6.568 8 N -0.598 5.598 9 C 0.108 3.892 10 C -0.121 4.121 11 C 0.126 3.874 12 C -0.159 4.159 13 O -0.308 6.308 14 C -0.360 4.360 15 H 0.083 0.917 16 C 0.047 3.953 17 N -0.910 5.910 18 Si 0.903 3.097 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.264 1.264 22 C 0.109 3.891 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.269 0.731 40 H 0.084 0.916 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.521 18.532 -6.012 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.419 3.581 7 O -0.457 6.457 8 N -0.340 5.340 9 C -0.015 4.015 10 C -0.159 4.159 11 C 0.084 3.916 12 C -0.216 4.216 13 O -0.223 6.223 14 C -0.438 4.438 15 H 0.101 0.899 16 C -0.150 4.150 17 N -0.554 5.554 18 Si 0.731 3.269 19 H -0.208 1.208 20 H -0.218 1.218 21 H -0.189 1.189 22 C -0.013 4.013 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.109 18.383 -6.162 20.328 hybrid contribution -0.338 0.007 0.403 0.526 sum 5.772 18.391 -5.759 20.117 Atomic orbital electron populations 1.22521 0.94093 1.05285 1.02212 1.22013 0.94372 0.91386 0.82387 1.21840 1.02107 0.92716 1.02929 1.22516 1.01417 1.03734 0.96390 1.86284 1.71737 1.23819 1.46136 1.17499 0.79000 0.80188 0.81448 1.90898 1.41418 1.70395 1.43002 1.47168 1.52550 1.13483 1.20794 1.22379 0.94455 0.98433 0.86216 1.22835 1.03214 0.93584 0.96305 1.21961 0.90437 0.90424 0.88805 1.22225 0.96156 1.01118 1.02132 1.85381 1.64695 1.29036 1.43180 1.20307 1.28590 0.90727 1.04202 0.89887 1.24287 0.97142 0.94695 0.98893 1.69682 1.37980 1.08696 1.39063 0.86218 0.79443 0.77555 0.83700 1.20787 1.21764 1.18873 1.22780 1.02361 0.77680 0.98438 0.92235 0.91353 0.89202 0.91587 0.90318 0.91559 0.89235 0.91339 0.92302 0.91248 0.90339 0.89722 0.89430 0.93214 0.91861 0.91403 0.92075 0.89775 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 8.37 37.16 0.31 -1.90 16 2 C 0.14 1.62 1.13 -90.62 -0.10 1.52 16 3 C -0.14 -1.19 8.85 37.16 0.33 -0.86 16 4 C -0.18 -2.15 8.37 37.15 0.31 -1.84 16 5 O -0.36 -5.37 9.41 -40.32 -0.38 -5.75 16 6 C 0.66 11.60 7.93 54.06 0.43 12.03 16 7 O -0.57 -11.21 12.21 -19.28 -0.24 -11.45 16 8 N -0.60 -10.23 3.33 -176.15 -0.59 -10.82 16 9 C 0.11 1.47 6.62 -2.41 -0.02 1.46 16 10 C -0.12 -1.85 6.32 -24.46 -0.15 -2.00 16 11 C 0.13 2.43 0.99 -88.78 -0.09 2.34 16 12 C -0.16 -2.77 8.35 37.16 0.31 -2.46 16 13 O -0.31 -7.62 8.32 -16.51 -0.14 -7.75 16 14 C -0.36 -10.08 9.04 30.88 0.28 -9.80 16 15 H 0.08 2.43 7.15 -52.49 -0.38 2.05 16 16 C 0.05 1.38 5.49 -17.52 -0.10 1.28 16 17 N -0.91 -27.72 13.96 55.48 0.77 -26.95 16 18 Si 0.90 22.70 28.62 -169.99 -4.86 17.83 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.26 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.11 2.14 5.46 -3.06 -0.02 2.13 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.09 1.36 5.88 -51.93 -0.31 1.05 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.32 5.88 -51.93 -0.31 1.01 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.83 7.71 -51.92 -0.40 0.43 16 33 H 0.08 0.94 8.04 -51.93 -0.42 0.53 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.09 1.13 8.04 -51.93 -0.42 0.72 16 36 H 0.05 0.72 7.44 -51.93 -0.39 0.34 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.31 7.17 -51.93 -0.37 0.94 16 39 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.08 1.89 7.97 -51.93 -0.41 1.48 16 41 H 0.07 1.39 7.85 -51.93 -0.41 0.98 16 LS Contribution 328.83 15.07 4.96 4.96 Total: -1.00 -32.14 328.83 -5.72 -37.86 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.74 Total: 0.18 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 1.50 Total: 1.88 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.19 Total: -37.77 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.75 Total: -24.95 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.86 Total: 17.83 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.14 -5.72 -37.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135373775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.273 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds