Wall clock time and date at job start Mon Mar 30 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52994 * 109.47286 * 239.99698 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.47424 * 125.65218 * 359.42538 * 8 6 5 10 10 C 1.55128 * 104.72539 * 155.81287 * 9 8 6 11 11 C 1.55161 * 101.48399 * 37.29371 * 10 9 8 12 12 C 1.53004 * 110.87218 * 82.76739 * 11 10 9 13 13 O 1.42902 * 110.71842 * 205.97042 * 11 10 9 14 14 C 1.34930 * 116.99850 * 174.97644 * 13 11 10 15 15 H 1.08002 * 120.00047 * 359.97438 * 14 13 11 16 16 C 1.38631 * 119.99766 * 179.97438 * 14 13 11 17 17 N 1.31578 * 120.00099 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 120.00357 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46908 * 89.99819 * 18 16 14 20 20 H 1.48493 * 109.47155 * 210.00081 * 18 16 14 21 21 H 1.48500 * 109.46586 * 329.99965 * 18 16 14 22 22 C 1.47028 * 125.64541 * 179.72566 * 8 6 5 23 23 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 24 24 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 25 25 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 28 28 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 29 29 H 1.08995 * 109.47307 * 299.99583 * 4 2 1 30 30 H 1.08999 * 109.47211 * 60.00515 * 4 2 1 31 31 H 1.09010 * 109.46887 * 180.02562 * 4 2 1 32 32 H 1.09007 * 110.36161 * 274.74556 * 9 8 6 33 33 H 1.09000 * 110.36555 * 37.06212 * 9 8 6 34 34 H 1.08994 * 111.19165 * 279.18842 * 10 9 8 35 35 H 1.09000 * 110.93969 * 155.28462 * 10 9 8 36 36 H 1.08997 * 109.47169 * 304.92957 * 12 11 10 37 37 H 1.08998 * 109.47052 * 64.93625 * 12 11 10 38 38 H 1.08999 * 109.46821 * 184.93242 * 12 11 10 39 39 H 0.97010 * 120.00514 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.87980 * 300.44492 * 22 8 6 41 41 H 1.08998 * 109.88121 * 61.45431 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 2.9172 -2.1400 3.5013 10 6 2.5898 -3.0303 4.7287 11 6 2.4017 -4.4186 4.0619 12 6 3.7515 -5.1038 3.8391 13 8 1.5411 -5.2448 4.8485 14 6 1.2063 -6.4461 4.3333 15 1 1.5859 -6.7441 3.3671 16 6 0.3750 -7.2979 5.0442 17 7 0.0490 -8.4695 4.5421 18 14 -0.2811 -6.7828 6.7157 19 1 -1.5723 -6.0701 6.5424 20 1 -0.4899 -7.9877 7.5582 21 1 0.6975 -5.8812 7.3751 22 6 1.7385 -4.0674 2.7134 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6768 -1.7489 -1.2491 30 1 1.6768 -0.2075 -2.1392 31 1 3.1301 -0.7216 -1.2488 32 1 3.9694 -2.2327 3.2321 33 1 2.6687 -1.0995 3.7107 34 1 1.6722 -2.7044 5.2183 35 1 3.4219 -3.0446 5.4326 36 1 4.4023 -4.4458 3.2635 37 1 4.2130 -5.3192 4.8028 38 1 3.6005 -6.0346 3.2924 39 1 -0.5330 -9.0655 5.0394 40 1 0.6580 -4.1902 2.7885 41 1 2.1307 -4.7110 1.9260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135373775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:33 Heat of formation + Delta-G solvation = -133.425928 kcal Electronic energy + Delta-G solvation = -22132.938736 eV Core-core repulsion = 18819.993222 eV Total energy + Delta-G solvation = -3312.945514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.94855 -40.43798 -38.19853 -37.12989 -35.07363 -34.11652 -32.58898 -30.33699 -28.37522 -28.28101 -27.93807 -26.87398 -24.51354 -22.69450 -20.96758 -20.45714 -19.47183 -19.00431 -17.85256 -17.57075 -17.24814 -16.41412 -16.08724 -15.78315 -15.41518 -15.08830 -14.76448 -14.71717 -14.42568 -14.05903 -13.87839 -13.33784 -13.27368 -13.17013 -12.98935 -12.92621 -12.89453 -12.85776 -12.78261 -12.49643 -12.44639 -12.25372 -12.11026 -11.79025 -11.51172 -11.40666 -11.14800 -11.07753 -10.39586 -9.85085 -8.23275 -5.93722 0.97662 1.40479 1.43338 1.61027 1.69082 2.45224 2.82454 3.08630 3.27147 3.55904 3.67530 3.76071 3.79890 3.95025 4.00239 4.26427 4.28666 4.46569 4.56079 4.60725 4.64739 4.70546 4.74686 4.75941 4.82905 4.86386 4.88997 4.91119 5.06472 5.10997 5.15926 5.19916 5.28189 5.34650 5.38724 5.43936 5.68261 6.17760 6.39016 7.15925 7.20944 7.79830 8.92277 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029395 B = 0.004582 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.327553 B = 6109.030397 C = 6330.713306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.122 3.878 3 C -0.131 4.131 4 C -0.180 4.180 5 O -0.357 6.357 6 C 0.661 3.339 7 O -0.599 6.599 8 N -0.602 5.602 9 C 0.111 3.889 10 C -0.111 4.111 11 C 0.109 3.891 12 C -0.150 4.150 13 O -0.323 6.323 14 C -0.345 4.345 15 H 0.053 0.947 16 C -0.016 4.016 17 N -0.955 5.955 18 Si 0.970 3.030 19 H -0.280 1.280 20 H -0.283 1.283 21 H -0.253 1.253 22 C 0.120 3.880 23 H 0.062 0.938 24 H 0.095 0.905 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.272 0.728 40 H 0.044 0.956 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.005 21.903 -5.080 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.086 3.914 3 C -0.188 4.188 4 C -0.238 4.238 5 O -0.272 6.272 6 C 0.416 3.584 7 O -0.491 6.491 8 N -0.343 5.343 9 C -0.010 4.010 10 C -0.149 4.149 11 C 0.068 3.932 12 C -0.208 4.208 13 O -0.238 6.238 14 C -0.423 4.423 15 H 0.070 0.930 16 C -0.208 4.208 17 N -0.602 5.602 18 Si 0.795 3.205 19 H -0.206 1.206 20 H -0.209 1.209 21 H -0.177 1.177 22 C -0.003 4.003 23 H 0.081 0.919 24 H 0.113 0.887 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.628 21.807 -5.229 23.687 hybrid contribution -0.763 -0.946 -0.050 1.217 sum 6.865 20.861 -5.279 22.587 Atomic orbital electron populations 1.22488 0.94440 1.03212 1.03740 1.22500 0.94412 0.93085 0.81452 1.21864 1.02596 0.89833 1.04481 1.22478 1.01790 1.01887 0.97599 1.86301 1.71463 1.21935 1.47504 1.17660 0.78572 0.81028 0.81095 1.90897 1.42681 1.71315 1.44195 1.47164 1.53058 1.12391 1.21734 1.22642 0.95185 0.99138 0.84044 1.22897 1.04353 0.90283 0.97345 1.22463 0.90152 0.91920 0.88686 1.22147 0.95568 1.00243 1.02805 1.85308 1.66173 1.27971 1.44375 1.20192 1.27519 0.91829 1.02810 0.92960 1.25158 0.97877 0.94850 1.02949 1.69804 1.39416 1.10110 1.40903 0.85190 0.78759 0.77460 0.79122 1.20648 1.20923 1.17727 1.22397 0.99796 0.79552 0.98525 0.91878 0.88674 0.92967 0.90819 0.87757 0.91020 0.92869 0.88727 0.91609 0.88534 0.87841 0.90375 0.86097 0.89725 0.90826 0.94463 0.91912 0.93763 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.18 8.37 71.98 0.60 -3.57 16 2 C 0.12 2.68 1.13 -10.79 -0.01 2.67 16 3 C -0.13 -1.75 8.85 71.98 0.64 -1.11 16 4 C -0.18 -3.99 8.37 71.98 0.60 -3.39 16 5 O -0.36 -9.92 9.41 -55.47 -0.52 -10.44 16 6 C 0.66 23.06 7.93 129.79 1.03 24.09 16 7 O -0.60 -24.71 12.21 19.80 0.24 -24.47 16 8 N -0.60 -20.22 3.33 -941.63 -3.13 -23.35 16 9 C 0.11 2.66 6.62 86.93 0.58 3.23 16 10 C -0.11 -3.06 6.32 32.06 0.20 -2.86 16 11 C 0.11 4.15 0.99 -9.60 -0.01 4.14 16 12 C -0.15 -5.09 8.35 71.98 0.60 -4.49 16 13 O -0.32 -16.07 8.32 -81.99 -0.68 -16.75 16 14 C -0.34 -19.96 9.04 67.91 0.61 -19.35 16 15 H 0.05 3.27 7.15 -2.91 -0.02 3.25 16 16 C -0.02 -0.92 5.49 84.82 0.47 -0.45 16 17 N -0.96 -60.13 13.96 21.61 0.30 -59.83 16 18 Si 0.97 47.17 28.62 68.60 1.96 49.13 16 19 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.25 -11.75 7.11 99.48 0.71 -11.04 16 22 C 0.12 4.90 5.46 86.73 0.47 5.38 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.05 1.62 5.88 -2.39 -0.01 1.61 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 1.59 5.88 -2.39 -0.01 1.58 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.33 8.14 -2.38 -0.02 1.32 16 32 H 0.10 1.86 7.71 -2.38 -0.02 1.84 16 33 H 0.10 2.04 8.04 -2.39 -0.02 2.02 16 34 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.12 2.56 8.04 -2.39 -0.02 2.54 16 36 H 0.08 2.25 7.44 -2.39 -0.02 2.23 16 37 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.04 1.47 7.17 -2.39 -0.02 1.45 16 39 H 0.27 16.01 8.31 -92.70 -0.77 15.24 16 40 H 0.04 2.12 7.97 -2.39 -0.02 2.10 16 41 H 0.05 2.19 7.85 -2.39 -0.02 2.17 16 Total: -1.00 -73.68 328.83 4.95 -68.73 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.00 Total: 12.70 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 5.78 Total: 4.28 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -2.83 Total: -83.18 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.96 Total: -51.66 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.96 Total: 49.13 kcal Total: -73.68 4.95 -68.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135373775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.697 kcal (2) G-P(sol) polarization free energy of solvation -73.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds