Wall clock time and date at job start Mon Mar 30 2020 05:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37093 * 120.00016 * 2 1 4 4 H 1.08005 * 119.99886 * 203.79567 * 3 2 1 5 5 C 1.38952 * 120.00313 * 23.79436 * 3 2 1 6 6 N 1.31408 * 119.99921 * 15.20515 * 5 3 2 7 7 Si 1.86802 * 120.00046 * 195.20568 * 5 3 2 8 8 H 1.48498 * 109.46970 * 0.02562 * 7 5 3 9 9 H 1.48494 * 109.47101 * 120.00026 * 7 5 3 10 10 H 1.48500 * 109.46985 * 240.00117 * 7 5 3 11 11 C 1.34776 * 119.99544 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99651 * 180.02562 * 11 2 1 13 13 C 1.50699 * 120.00489 * 359.97438 * 11 2 1 14 14 H 1.09004 * 115.52147 * 35.17805 * 13 11 2 15 15 C 1.53028 * 117.47052 * 249.66888 * 13 11 2 16 16 H 1.09000 * 118.64142 * 144.77084 * 15 13 11 17 17 C 1.53658 * 117.00717 * 357.94790 * 15 13 11 18 18 C 1.53559 * 108.15207 * 250.01479 * 17 15 13 19 19 C 1.50891 * 108.59468 * 63.32268 * 18 17 15 20 20 C 1.38095 * 120.38400 * 135.93776 * 19 18 17 21 21 C 1.38270 * 119.91410 * 179.97438 * 20 19 18 22 22 C 1.38248 * 120.04780 * 359.97438 * 21 20 19 23 23 C 1.38274 * 120.03928 * 0.02562 * 22 21 20 24 24 C 1.38088 * 119.91403 * 0.02562 * 23 22 21 25 25 C 1.50891 * 120.39035 * 179.97438 * 24 23 22 26 26 H 1.09000 * 115.69215 * 58.43862 * 25 24 23 27 27 H 1.08996 * 109.47187 * 265.24534 * 1 2 3 28 28 H 1.09010 * 109.46998 * 25.24187 * 1 2 3 29 29 H 1.09001 * 109.47525 * 145.24005 * 1 2 3 30 30 H 0.96998 * 120.00227 * 179.97438 * 6 5 3 31 31 H 1.09001 * 109.72632 * 9.67729 * 17 15 13 32 32 H 1.09000 * 109.72958 * 130.34875 * 17 15 13 33 33 H 1.08992 * 109.61712 * 183.05555 * 18 17 15 34 34 H 1.08996 * 109.61617 * 303.59371 * 18 17 15 35 35 H 1.07997 * 120.04039 * 0.22665 * 20 19 18 36 36 H 1.08002 * 119.97172 * 180.02562 * 21 20 19 37 37 H 1.07999 * 119.98248 * 180.02562 * 22 21 20 38 38 H 1.07997 * 120.04105 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1617 1.2270 -0.3774 5 6 1.5444 2.3395 0.4855 6 7 0.4514 2.2518 1.2097 7 14 2.2832 4.0133 0.1086 8 1 3.5036 3.8405 -0.7197 9 1 1.2941 4.8352 -0.6337 10 1 2.6391 4.6947 1.3792 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0001 13 6 1.3853 -2.4723 -0.0005 14 1 0.4540 -2.4769 -0.5669 15 6 1.4414 -3.3198 1.2724 16 1 0.5572 -3.8882 1.5610 17 6 2.3038 -2.7878 2.4275 18 6 3.5343 -3.6963 2.5637 19 6 4.3487 -3.5964 1.2974 20 6 5.7228 -3.4740 1.3585 21 6 6.4596 -3.3837 0.1919 22 6 5.8216 -3.4165 -1.0341 23 6 4.4457 -3.5391 -1.0953 24 6 3.7098 -3.6282 0.0697 25 6 2.2077 -3.7617 0.0154 26 1 1.8295 -4.6252 -0.5318 27 1 -0.3633 -0.0852 1.0241 28 1 -0.3633 0.9296 -0.4383 29 1 -0.3634 -0.8443 -0.5859 30 1 0.0285 3.0561 1.5489 31 1 2.6217 -1.7681 2.2099 32 1 1.7295 -2.8049 3.3537 33 1 4.1363 -3.3722 3.4125 34 1 3.2132 -4.7273 2.7119 35 1 6.2217 -3.4529 2.3161 36 1 7.5344 -3.2884 0.2387 37 1 6.3982 -3.3464 -1.9446 38 1 3.9473 -3.5643 -2.0530 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162863386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:46 Heat of formation + Delta-G solvation = 25.997786 kcal Electronic energy + Delta-G solvation = -21277.879734 eV Core-core repulsion = 18279.156271 eV Total energy + Delta-G solvation = -2998.723463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.27508 -38.04217 -36.23021 -34.41123 -32.79648 -31.53466 -30.14846 -29.07102 -26.44028 -24.99630 -23.69175 -23.06411 -21.77981 -21.39067 -18.47241 -18.14271 -16.80521 -16.58382 -15.59768 -15.12041 -14.82067 -14.54945 -14.21049 -13.90868 -13.56193 -13.19817 -12.93642 -12.64162 -12.35326 -12.03852 -11.77980 -11.61674 -11.32701 -11.22980 -11.19332 -10.92198 -10.80763 -10.54972 -10.29978 -10.22567 -10.11658 -9.76675 -9.42268 -8.95670 -8.48327 -8.11123 -7.60707 -7.54021 -6.28212 -3.81141 1.97980 2.04299 3.16234 3.27421 3.34548 3.64746 4.13783 4.30029 4.46339 4.77455 5.06417 5.11265 5.21332 5.35530 5.37939 5.50634 5.53119 5.59635 5.70876 5.77036 5.88416 5.92435 5.96673 6.12532 6.14978 6.31932 6.35844 6.42535 6.45898 6.64966 6.66715 6.86200 6.90027 7.05553 7.08786 7.22681 7.28359 7.61706 7.64099 8.21679 8.56563 9.26804 9.50525 10.10243 10.77240 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.021210 B = 0.006564 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.807771 B = 4264.395426 C = 4790.733339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.446 5.446 3 C -0.301 4.301 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.881 5.881 7 Si 0.921 3.079 8 H -0.269 1.269 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.475 3.525 12 O -0.561 6.561 13 C -0.151 4.151 14 H 0.111 0.889 15 C -0.124 4.124 16 H 0.109 0.891 17 C -0.095 4.095 18 C -0.072 4.072 19 C -0.071 4.071 20 C -0.118 4.118 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.095 4.095 24 C 0.000 4.000 25 C -0.102 4.102 26 H 0.113 0.887 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.265 0.735 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 -11.584 -0.242 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.165 5.165 3 C -0.429 4.429 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.521 5.521 7 Si 0.748 3.252 8 H -0.193 1.193 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.262 3.738 12 O -0.444 6.444 13 C -0.173 4.173 14 H 0.129 0.871 15 C -0.143 4.143 16 H 0.127 0.873 17 C -0.132 4.132 18 C -0.109 4.109 19 C -0.071 4.071 20 C -0.136 4.136 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.113 4.113 24 C 0.000 4.000 25 C -0.121 4.121 26 H 0.131 0.869 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.115 -11.404 -0.152 11.599 hybrid contribution -0.075 1.136 -0.193 1.155 sum 2.039 -10.267 -0.345 10.474 Atomic orbital electron populations 1.21432 0.81593 0.99594 1.00348 1.43498 1.05238 1.04575 1.63202 1.19641 1.00222 0.83944 1.39094 0.88541 1.25294 0.96776 0.99956 0.95309 1.70017 1.20429 1.29268 1.32352 0.85948 0.79106 0.81885 0.78290 1.19287 1.20731 1.20849 1.19053 0.87600 0.83614 0.83491 1.90602 1.13158 1.86172 1.54513 1.22577 1.00697 0.91897 1.02089 0.87087 1.22620 1.00408 1.01940 0.89336 0.87306 1.21454 0.94654 1.00799 0.96310 1.20561 0.96001 0.99499 0.94841 1.19527 0.93395 0.99857 0.94284 1.20745 0.93358 1.01780 0.97696 1.20861 0.98908 1.02345 0.92799 1.20867 0.94559 1.01497 0.97147 1.20580 0.93635 0.99783 0.97268 1.18561 0.92174 0.96639 0.92659 1.21180 0.91085 0.97548 1.02262 0.86901 0.93201 0.91081 0.95727 0.92457 0.89672 0.91634 0.91505 0.91321 0.87128 0.87224 0.87194 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.58 8.47 59.85 0.51 3.09 16 2 N -0.45 -11.48 3.01 -122.19 -0.37 -11.84 16 3 C -0.30 -8.46 9.24 -14.93 -0.14 -8.60 16 4 H 0.10 2.87 7.45 -52.48 -0.39 2.48 16 5 C 0.03 0.79 4.98 -17.47 -0.09 0.70 16 6 N -0.88 -23.80 10.95 55.50 0.61 -23.20 16 7 Si 0.92 21.10 29.58 -169.99 -5.03 16.07 16 8 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 C 0.47 11.43 5.78 -10.99 -0.06 11.37 16 12 O -0.56 -14.95 12.28 5.55 0.07 -14.88 16 13 C -0.15 -2.84 5.26 -91.79 -0.48 -3.32 16 14 H 0.11 1.86 6.54 -51.93 -0.34 1.52 16 15 C -0.12 -2.02 6.22 -89.90 -0.56 -2.58 16 16 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 17 C -0.09 -1.66 5.77 -26.10 -0.15 -1.81 16 18 C -0.07 -1.13 5.84 -27.50 -0.16 -1.29 16 19 C -0.07 -1.27 5.08 -104.51 -0.53 -1.80 16 20 C -0.12 -2.00 9.69 -39.62 -0.38 -2.39 16 21 C -0.13 -2.16 10.05 -39.57 -0.40 -2.56 16 22 C -0.12 -2.07 10.05 -39.56 -0.40 -2.47 16 23 C -0.09 -1.71 8.95 -39.62 -0.35 -2.06 16 24 C 0.00 0.00 3.21 -104.51 -0.34 -0.34 16 25 C -0.10 -1.70 6.03 -91.34 -0.55 -2.25 16 26 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.05 1.16 7.86 -51.93 -0.41 0.75 16 28 H 0.07 1.70 6.79 -51.92 -0.35 1.34 16 29 H 0.02 0.46 6.22 -51.93 -0.32 0.14 16 30 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.08 1.90 5.97 -51.93 -0.31 1.59 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.97 8.00 -51.93 -0.42 0.56 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.11 1.62 8.03 -52.49 -0.42 1.20 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -31.11 303.66 -9.28 -40.39 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.06 Total: 5.19 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -4.08 Total: -16.31 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.24 Total: -35.04 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.07 Total: -14.88 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.11 -9.28 -40.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162863386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.390 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds