Wall clock time and date at job start Mon Mar 30 2020 05:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46462 * 111.00084 * 294.02068 * 12 2 1 14 14 C 1.53266 * 109.91278 * 197.80046 * 13 12 2 15 15 S 1.81926 * 108.46199 * 297.93187 * 14 13 12 16 16 C 1.81740 * 101.90412 * 51.15381 * 15 14 13 17 17 C 1.52962 * 109.49693 * 68.81797 * 16 15 14 18 18 C 1.53132 * 109.18635 * 176.67266 * 17 16 15 19 19 O 1.42905 * 109.37347 * 302.66906 * 18 17 16 20 20 C 1.42899 * 114.13810 * 61.29754 * 19 18 17 21 21 C 1.52932 * 109.55086 * 188.86838 * 16 15 14 22 22 C 1.46510 * 110.99853 * 59.99944 * 12 2 1 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.39660 * 317.93003 * 13 12 2 28 28 H 1.08998 * 109.40240 * 77.66493 * 13 12 2 29 29 H 1.09003 * 109.63987 * 178.23220 * 14 13 12 30 30 H 1.09002 * 109.63504 * 57.61932 * 14 13 12 31 31 H 1.09003 * 109.51557 * 296.58270 * 17 16 15 32 32 H 1.08994 * 109.52052 * 56.75722 * 17 16 15 33 33 H 1.09000 * 109.48407 * 182.69918 * 18 17 16 34 34 H 1.08993 * 109.48696 * 62.64041 * 18 17 16 35 35 H 1.09000 * 109.48196 * 178.75096 * 20 19 18 36 36 H 1.08992 * 109.50021 * 58.71031 * 20 19 18 37 37 H 1.08995 * 109.51905 * 303.30659 * 21 16 15 38 38 H 1.09004 * 109.51651 * 63.41560 * 21 16 15 39 39 H 1.08997 * 109.40224 * 282.62774 * 22 12 2 40 40 H 1.08999 * 109.39973 * 42.37444 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0197 -0.6925 -1.1993 13 6 1.6700 -2.1143 -1.1641 14 6 2.5404 -2.8908 -2.1583 15 16 2.1983 -2.2674 -3.8328 16 6 2.3954 -0.4742 -3.6128 17 6 3.8678 -0.1504 -3.3536 18 6 4.0388 1.3679 -3.2520 19 8 3.5635 1.9799 -4.4527 20 6 2.1771 1.7533 -4.7149 21 6 1.9291 0.2507 -4.8761 22 6 1.5500 -0.0282 -2.4178 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.9026 -0.5283 4.4376 27 1 1.8342 -2.5027 -0.1590 28 1 0.6200 -2.2356 -1.4306 29 1 2.2984 -3.9523 -2.1059 30 1 3.5931 -2.7398 -1.9191 31 1 4.1840 -0.6158 -2.4200 32 1 4.4745 -0.5311 -4.1751 33 1 5.0935 1.6066 -3.1151 34 1 3.4678 1.7421 -2.4024 35 1 1.8914 2.2692 -5.6315 36 1 1.5829 2.1328 -3.8838 37 1 2.4870 -0.1203 -5.7358 38 1 0.8648 0.0707 -5.0273 39 1 0.5069 -0.2906 -2.5941 40 1 1.6349 1.0518 -2.2970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185991727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:12 Heat of formation + Delta-G solvation = -51.508654 kcal Electronic energy + Delta-G solvation = -20581.633659 eV Core-core repulsion = 17714.993216 eV Total energy + Delta-G solvation = -2866.640443 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00197 -39.10432 -35.61521 -34.42738 -32.92969 -32.04434 -30.34726 -27.66409 -26.79677 -25.17868 -24.71447 -23.65389 -21.35764 -19.98865 -18.64124 -18.10565 -17.26657 -16.93405 -16.69878 -16.24085 -15.84899 -15.63245 -15.40462 -15.22220 -14.89456 -14.39684 -14.15504 -14.09666 -13.58764 -13.48110 -13.30836 -13.00926 -13.00145 -12.56564 -12.29396 -12.28353 -12.03491 -11.91031 -11.77876 -11.45116 -11.18030 -11.11120 -10.85237 -10.71036 -10.16486 -9.09282 -8.65372 -8.28810 -6.31623 0.80537 1.28713 1.34529 1.43628 1.52220 2.30230 2.93951 2.98713 3.07318 3.61992 3.68729 3.89588 4.03414 4.04649 4.22906 4.26904 4.30103 4.38814 4.44336 4.48439 4.50493 4.57876 4.67020 4.69886 4.71953 4.81815 4.87066 4.89867 4.99205 5.08712 5.11151 5.18733 5.22662 5.38156 5.57726 5.97854 6.25678 6.29087 6.62304 6.74808 7.32993 8.86901 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.022004 B = 0.007080 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.187294 B = 3953.652873 C = 4552.916477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.192 3.808 3 H 0.036 0.964 4 C -0.504 4.504 5 H 0.049 0.951 6 C 0.017 3.983 7 N -0.945 5.945 8 Si 0.944 3.056 9 H -0.272 1.272 10 H -0.301 1.301 11 H -0.248 1.248 12 N -0.535 5.535 13 C 0.064 3.936 14 C -0.064 4.064 15 S -0.284 6.284 16 C -0.006 4.006 17 C -0.126 4.126 18 C 0.067 3.933 19 O -0.394 6.394 20 C 0.062 3.938 21 C -0.124 4.124 22 C 0.063 3.937 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.036 0.964 26 H 0.265 0.735 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.121 0.879 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.607 3.448 -16.633 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.084 3.916 3 H 0.054 0.946 4 C -0.542 4.542 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.199 1.199 10 H -0.229 1.229 11 H -0.172 1.172 12 N -0.259 5.259 13 C -0.066 4.066 14 C -0.212 4.212 15 S -0.053 6.053 16 C -0.116 4.116 17 C -0.165 4.165 18 C -0.011 4.011 19 O -0.313 6.313 20 C -0.016 4.016 21 C -0.163 4.163 22 C -0.066 4.066 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.139 0.861 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.061 0.939 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.263 2.911 -17.512 17.797 hybrid contribution -1.092 0.586 2.206 2.530 sum -2.354 3.497 -15.306 15.876 Atomic orbital electron populations 1.22712 1.00049 1.01122 0.99960 1.19516 0.89718 0.94496 0.87890 0.94587 1.21185 1.30640 1.12693 0.89689 0.93289 1.25682 0.97305 0.99577 0.95523 1.70017 1.47643 1.42358 0.98538 0.85940 0.79009 0.80547 0.77321 1.19874 1.22907 1.17183 1.61180 1.60980 1.02054 1.01639 1.22086 0.96162 0.88607 0.99722 1.23497 1.03169 1.02331 0.92227 1.86517 1.93219 1.07650 1.17962 1.22686 0.98781 0.92081 0.98090 1.22220 0.93834 0.97523 1.02962 1.22613 1.00662 0.91275 0.86577 1.87885 1.25951 1.74355 1.43110 1.22776 0.82251 0.93893 1.02653 1.22012 1.03064 0.96077 0.95183 1.22296 0.96093 0.99275 0.88970 0.93154 0.92246 0.94528 0.92615 0.90318 0.94653 0.86713 0.89933 0.90838 0.90697 0.87733 0.93467 0.86097 0.92728 0.90001 0.89164 0.93936 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.07 8.09 71.98 0.58 -6.48 16 2 C 0.19 8.26 1.94 44.17 0.09 8.35 16 3 H 0.04 1.61 7.13 -2.39 -0.02 1.59 16 4 C -0.50 -26.80 8.26 25.60 0.21 -26.58 16 5 H 0.05 2.90 6.65 -2.91 -0.02 2.88 16 6 C 0.02 0.93 5.45 84.65 0.46 1.39 16 7 N -0.95 -57.02 13.96 21.45 0.30 -56.72 16 8 Si 0.94 43.21 24.37 68.60 1.67 44.88 16 9 H -0.27 -12.02 6.87 99.48 0.68 -11.34 16 10 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 11 H -0.25 -10.42 6.53 99.48 0.65 -9.77 16 12 N -0.54 -19.73 3.55 -877.02 -3.11 -22.84 16 13 C 0.06 2.30 4.45 86.48 0.39 2.68 16 14 C -0.06 -1.94 6.37 72.07 0.46 -1.48 16 15 S -0.28 -8.04 21.16 -56.49 -1.20 -9.24 16 16 C -0.01 -0.16 0.61 -10.82 -0.01 -0.17 16 17 C -0.13 -3.41 4.71 30.63 0.14 -3.27 16 18 C 0.07 1.71 6.57 72.03 0.47 2.18 16 19 O -0.39 -9.76 10.76 -148.98 -1.60 -11.37 16 20 C 0.06 1.24 6.57 72.03 0.47 1.71 16 21 C -0.12 -2.64 4.93 30.62 0.15 -2.49 16 22 C 0.06 1.90 2.70 86.39 0.23 2.13 16 23 H 0.05 1.99 6.97 -2.39 -0.02 1.98 16 24 H 0.06 1.97 6.81 -2.39 -0.02 1.95 16 25 H 0.04 1.50 3.27 -2.38 -0.01 1.50 16 26 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.08 3.36 5.64 -2.39 -0.01 3.35 16 28 H 0.04 1.25 7.17 -2.39 -0.02 1.24 16 29 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.08 2.62 7.67 -2.39 -0.02 2.60 16 31 H 0.07 2.32 6.77 -2.39 -0.02 2.30 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.05 1.32 6.71 -2.39 -0.02 1.30 16 35 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.09 6.63 -2.39 -0.02 1.07 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.04 1.28 7.09 -2.39 -0.02 1.26 16 40 H 0.08 2.39 4.91 -2.39 -0.01 2.38 16 Total: -1.00 -60.01 295.53 0.66 -59.34 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.95 Total: 17.97 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 3.65 Total: -22.02 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -2.81 Total: -79.57 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.60 Total: -11.37 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.67 Total: 44.88 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.20 Total: -9.24 kcal Total: -60.01 0.66 -59.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185991727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.836 kcal (2) G-P(sol) polarization free energy of solvation -60.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds