Wall clock time and date at job start Mon Mar 30 2020 04:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99917 * 2 1 4 4 H 1.48503 * 109.46722 * 269.99985 * 3 2 1 5 5 H 1.48498 * 109.47090 * 29.99730 * 3 2 1 6 6 H 1.48495 * 109.47057 * 150.00136 * 3 2 1 7 7 C 1.37874 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00275 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99658 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47358 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47502 * 180.02562 * 10 9 7 12 12 C 1.81397 * 103.00135 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.47125 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47431 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00606 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99487 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00203 * 180.02562 * 15 14 13 18 18 C 1.54894 * 110.48422 * 63.24037 * 17 15 14 19 19 C 1.55238 * 102.58338 * 156.67616 * 18 17 15 20 20 C 1.54266 * 104.23333 * 322.08174 * 19 18 17 21 21 C 1.53869 * 106.59800 * 23.61579 * 20 19 18 22 22 H 0.97007 * 119.99909 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47205 * 59.99454 * 9 7 2 24 24 H 1.08999 * 109.47572 * 300.00029 * 9 7 2 25 25 H 1.08996 * 109.46911 * 59.99492 * 10 9 7 26 26 H 1.09000 * 109.46909 * 299.99986 * 10 9 7 27 27 H 1.09005 * 109.47054 * 59.99584 * 12 11 10 28 28 H 1.08996 * 109.46891 * 300.00142 * 12 11 10 29 29 H 1.09005 * 109.47244 * 60.00007 * 13 12 11 30 30 H 1.08996 * 109.47602 * 300.00013 * 13 12 11 31 31 H 0.97005 * 119.99133 * 0.02562 * 14 13 12 32 32 H 1.09002 * 110.43350 * 300.69816 * 17 15 14 33 33 H 1.08996 * 110.75388 * 275.05970 * 18 17 15 34 34 H 1.08993 * 110.76071 * 38.44196 * 18 17 15 35 35 H 1.09005 * 110.46917 * 203.39204 * 19 18 17 36 36 H 1.09007 * 110.58541 * 80.83124 * 19 18 17 37 37 H 1.08999 * 110.03060 * 264.32313 * 20 19 18 38 38 H 1.09006 * 110.06829 * 142.91691 * 20 19 18 39 39 H 1.09001 * 110.02983 * 240.71432 * 21 20 19 40 40 H 1.08995 * 110.03881 * 119.28625 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2330 -0.0002 12 6 2.6650 -6.4702 -0.0009 13 6 2.0542 -7.8729 -0.0010 14 7 3.1256 -8.8721 -0.0022 15 6 2.8224 -10.1853 -0.0029 16 8 1.6626 -10.5399 -0.0022 17 6 3.9246 -11.2131 -0.0036 18 6 4.7666 -11.1057 1.2921 19 6 5.3888 -12.5231 1.4095 20 6 4.2653 -13.4706 0.9405 21 6 3.3344 -12.6377 0.0421 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6241 -2.5567 0.8902 25 1 2.8720 -3.6043 0.8905 26 1 2.8719 -3.6043 -0.8895 27 1 3.2812 -6.3426 0.8891 28 1 3.2810 -6.3417 -0.8908 29 1 1.4377 -8.0008 -0.8908 30 1 1.4383 -8.0012 0.8891 31 1 4.0532 -8.5884 -0.0024 32 1 4.5585 -11.0907 -0.8818 33 1 5.5428 -10.3479 1.1865 34 1 4.1296 -10.8911 2.1501 35 1 5.6604 -12.7357 2.4435 36 1 6.2602 -12.6140 0.7608 37 1 3.7134 -13.8497 1.8006 38 1 4.6880 -14.2999 0.3732 39 1 2.3306 -12.6125 0.4661 40 1 3.3057 -13.0622 -0.9614 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190981384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:25 Heat of formation + Delta-G solvation = -75.923167 kcal Electronic energy + Delta-G solvation = -17607.351852 eV Core-core repulsion = 14739.652717 eV Total energy + Delta-G solvation = -2867.699136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.29517 -37.52440 -35.44320 -33.72007 -31.22369 -30.90186 -29.18495 -28.93974 -25.38656 -23.70909 -22.04741 -21.01002 -20.85088 -19.89493 -17.69142 -16.55711 -16.43723 -16.10262 -15.66269 -15.22256 -14.92142 -14.53111 -14.45765 -13.77883 -13.72759 -13.42996 -13.01961 -12.42646 -12.31216 -11.96326 -11.83579 -11.63591 -11.52277 -11.49665 -11.47751 -11.17874 -11.05028 -10.77507 -10.63486 -10.23618 -9.98536 -9.70363 -9.54613 -9.26095 -9.11010 -8.44925 -7.23018 -6.08630 -4.13622 1.90482 2.45258 3.11800 3.17319 3.27108 3.33719 3.36420 4.09277 4.18452 4.37891 4.39255 4.66268 4.85086 4.86935 4.96404 5.07723 5.12380 5.17551 5.26865 5.27174 5.37146 5.42035 5.56010 5.69371 5.71147 5.77676 5.85354 5.92306 5.93038 6.01090 6.11368 6.21349 6.67009 7.27363 7.53169 7.61346 7.87136 8.02867 8.23827 8.91258 9.50397 11.02091 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.054011 B = 0.002374 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.290272 B =11793.443350 C =12181.003413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.058 4.058 11 S -0.268 6.268 12 C -0.109 4.109 13 C 0.137 3.863 14 N -0.728 5.728 15 C 0.518 3.482 16 O -0.537 6.537 17 C -0.114 4.114 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.125 4.125 21 C -0.113 4.113 22 H 0.263 0.737 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.400 0.600 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.189 -23.894 1.123 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.206 4.206 11 S -0.041 6.041 12 C -0.258 4.258 13 C 0.013 3.987 14 N -0.380 5.380 15 C 0.304 3.696 16 O -0.414 6.414 17 C -0.136 4.136 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.163 4.163 21 C -0.151 4.151 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.234 0.766 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.079 -24.222 1.125 26.259 hybrid contribution 2.247 1.409 -0.076 2.653 sum 12.326 -22.812 1.049 25.950 Atomic orbital electron populations 1.69974 1.06070 1.26921 1.49829 1.25023 0.94918 0.99345 0.95029 0.86508 0.79725 0.83077 0.78176 1.20541 1.21078 1.19839 1.21072 0.92972 0.90213 1.51952 0.92454 1.18915 0.93421 0.89199 0.98665 1.23717 1.01438 0.92199 1.03205 1.87045 1.15958 1.03029 1.98079 1.23426 1.00994 0.96416 1.04927 1.21022 0.89491 0.84501 1.03692 1.46075 1.10275 1.05819 1.75855 1.20577 0.90462 0.82968 0.75569 1.90707 1.21074 1.80486 1.49125 1.22190 0.95944 0.94872 1.00566 1.22566 0.98535 0.97917 0.96275 1.22410 0.98008 0.94186 1.01500 1.22155 0.96569 0.98110 0.99479 1.22075 1.00459 0.92006 1.00520 0.92729 0.95454 0.95437 0.91283 0.91293 0.89966 0.89969 0.90476 0.90474 0.76595 0.88134 0.90779 0.90811 0.91345 0.91340 0.91636 0.91691 0.89747 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.94 4.98 -27.88 -0.14 0.80 16 10 C -0.06 -1.17 5.88 37.16 0.22 -0.95 16 11 S -0.27 -4.80 21.74 -107.50 -2.34 -7.14 16 12 C -0.11 -1.37 6.05 37.15 0.22 -1.15 16 13 C 0.14 1.68 5.68 -4.04 -0.02 1.66 16 14 N -0.73 -7.10 5.52 -60.30 -0.33 -7.43 16 15 C 0.52 5.78 7.14 -10.99 -0.08 5.70 16 16 O -0.54 -8.30 15.44 5.56 0.09 -8.21 16 17 C -0.11 -0.88 3.24 -90.11 -0.29 -1.17 16 18 C -0.12 -0.72 6.32 -24.55 -0.16 -0.87 16 19 C -0.12 -0.68 6.84 -24.88 -0.17 -0.85 16 20 C -0.13 -0.79 6.80 -25.62 -0.17 -0.96 16 21 C -0.11 -0.91 6.17 -25.62 -0.16 -1.07 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 26 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 27 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.40 2.73 8.47 -40.82 -0.35 2.38 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.88 6.88 -51.93 -0.36 0.52 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -31.77 342.10 -9.87 -41.65 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -7.00 Total: -2.41 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -1.16 Total: -12.05 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.40 Total: -33.19 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -2.34 Total: -7.14 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.77 -9.87 -41.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190981384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.274 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds