Wall clock time and date at job start Mon Mar 30 2020 04:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99917 * 2 1 4 4 H 1.48503 * 109.46722 * 269.99985 * 3 2 1 5 5 H 1.48498 * 109.47090 * 29.99730 * 3 2 1 6 6 H 1.48495 * 109.47057 * 150.00136 * 3 2 1 7 7 C 1.37874 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00275 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99658 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47358 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47502 * 180.02562 * 10 9 7 12 12 C 1.81397 * 103.00135 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.47125 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47431 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00606 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99487 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00203 * 180.02562 * 15 14 13 18 18 C 1.54894 * 110.48422 * 63.24037 * 17 15 14 19 19 C 1.55238 * 102.58338 * 156.67616 * 18 17 15 20 20 C 1.54266 * 104.23333 * 322.08174 * 19 18 17 21 21 C 1.53869 * 106.59800 * 23.61579 * 20 19 18 22 22 H 0.97007 * 119.99909 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47205 * 59.99454 * 9 7 2 24 24 H 1.08999 * 109.47572 * 300.00029 * 9 7 2 25 25 H 1.08996 * 109.46911 * 59.99492 * 10 9 7 26 26 H 1.09000 * 109.46909 * 299.99986 * 10 9 7 27 27 H 1.09005 * 109.47054 * 59.99584 * 12 11 10 28 28 H 1.08996 * 109.46891 * 300.00142 * 12 11 10 29 29 H 1.09005 * 109.47244 * 60.00007 * 13 12 11 30 30 H 1.08996 * 109.47602 * 300.00013 * 13 12 11 31 31 H 0.97005 * 119.99133 * 0.02562 * 14 13 12 32 32 H 1.09002 * 110.43350 * 300.69816 * 17 15 14 33 33 H 1.08996 * 110.75388 * 275.05970 * 18 17 15 34 34 H 1.08993 * 110.76071 * 38.44196 * 18 17 15 35 35 H 1.09005 * 110.46917 * 203.39204 * 19 18 17 36 36 H 1.09007 * 110.58541 * 80.83124 * 19 18 17 37 37 H 1.08999 * 110.03060 * 264.32313 * 20 19 18 38 38 H 1.09006 * 110.06829 * 142.91691 * 20 19 18 39 39 H 1.09001 * 110.02983 * 240.71432 * 21 20 19 40 40 H 1.08995 * 110.03881 * 119.28625 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2330 -0.0002 12 6 2.6650 -6.4702 -0.0009 13 6 2.0542 -7.8729 -0.0010 14 7 3.1256 -8.8721 -0.0022 15 6 2.8224 -10.1853 -0.0029 16 8 1.6626 -10.5399 -0.0022 17 6 3.9246 -11.2131 -0.0036 18 6 4.7666 -11.1057 1.2921 19 6 5.3888 -12.5231 1.4095 20 6 4.2653 -13.4706 0.9405 21 6 3.3344 -12.6377 0.0421 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6241 -2.5567 0.8902 25 1 2.8720 -3.6043 0.8905 26 1 2.8719 -3.6043 -0.8895 27 1 3.2812 -6.3426 0.8891 28 1 3.2810 -6.3417 -0.8908 29 1 1.4377 -8.0008 -0.8908 30 1 1.4383 -8.0012 0.8891 31 1 4.0532 -8.5884 -0.0024 32 1 4.5585 -11.0907 -0.8818 33 1 5.5428 -10.3479 1.1865 34 1 4.1296 -10.8911 2.1501 35 1 5.6604 -12.7357 2.4435 36 1 6.2602 -12.6140 0.7608 37 1 3.7134 -13.8497 1.8006 38 1 4.6880 -14.2999 0.3732 39 1 2.3306 -12.6125 0.4661 40 1 3.3057 -13.0622 -0.9614 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190981384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:25 Heat of formation + Delta-G solvation = -95.162223 kcal Electronic energy + Delta-G solvation = -17608.186120 eV Core-core repulsion = 14739.652717 eV Total energy + Delta-G solvation = -2868.533404 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.14027 -38.16466 -36.44717 -35.77553 -32.90939 -32.14337 -29.82498 -29.49984 -27.37579 -24.78994 -23.11455 -22.62264 -21.37860 -20.63033 -18.67362 -18.48026 -17.36313 -16.97144 -16.71843 -16.50351 -16.35907 -15.73035 -15.57469 -15.12622 -14.74588 -14.31079 -14.26537 -13.88380 -13.50164 -13.25135 -13.10120 -12.91441 -12.78106 -12.43056 -12.18450 -12.14276 -12.05833 -11.97196 -11.69569 -11.68910 -11.35356 -11.28206 -10.87924 -10.78080 -10.60774 -10.21280 -8.68638 -8.23050 -6.36775 0.59098 1.41736 1.43397 1.54509 1.58123 1.70062 2.29049 2.40864 3.10434 3.50797 3.62163 3.66919 3.83358 3.87056 4.23838 4.27114 4.34618 4.38258 4.48166 4.53738 4.59166 4.61483 4.67164 4.79856 4.82319 4.87440 4.97244 5.10891 5.21126 5.27328 5.30837 5.38604 5.41248 5.49033 5.49388 5.73851 6.10341 6.49031 6.78114 7.20036 7.32915 8.88724 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.054011 B = 0.002374 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.290272 B =11793.443350 C =12181.003413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.041 3.959 10 C -0.044 4.044 11 S -0.312 6.312 12 C -0.083 4.083 13 C 0.145 3.855 14 N -0.712 5.712 15 C 0.514 3.486 16 O -0.588 6.588 17 C -0.107 4.107 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.117 4.117 22 H 0.265 0.735 23 H -0.005 1.005 24 H -0.004 1.004 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.419 0.581 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.748 -24.281 1.037 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.580 4.580 8 H 0.088 0.912 9 C 0.003 3.997 10 C -0.192 4.192 11 S -0.085 6.085 12 C -0.231 4.231 13 C 0.019 3.981 14 N -0.366 5.366 15 C 0.302 3.698 16 O -0.468 6.468 17 C -0.128 4.128 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.162 4.162 21 C -0.155 4.155 22 H 0.074 0.926 23 H 0.014 0.986 24 H 0.014 0.986 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.256 0.744 32 H 0.145 0.855 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.688 -24.604 1.041 28.175 hybrid contribution 1.097 1.406 -0.052 1.784 sum 14.785 -23.199 0.989 27.527 Atomic orbital electron populations 1.70125 1.08036 1.28040 1.51014 1.26063 0.95800 1.03682 0.94449 0.85325 0.78618 0.77798 0.78555 1.19676 1.20952 1.18257 1.21546 0.93786 0.91218 1.51431 0.91163 1.18701 0.93819 0.91605 0.95588 1.23327 0.99965 0.91542 1.04326 1.87195 1.19169 1.03927 1.98258 1.23379 0.98804 0.93842 1.07115 1.20727 0.90028 0.85079 1.02220 1.45883 1.10649 1.04981 1.75051 1.21280 0.90622 0.83633 0.74247 1.90693 1.23411 1.81259 1.51411 1.22254 0.94986 0.93023 1.02585 1.22597 0.98550 0.99276 0.94611 1.22420 0.97942 0.93078 1.02255 1.22155 0.96536 0.98466 0.99038 1.22086 0.99411 0.93054 1.00958 0.92619 0.98623 0.98606 0.90062 0.90054 0.87745 0.87735 0.92093 0.92148 0.74378 0.85492 0.88425 0.92364 0.90749 0.89725 0.92262 0.90451 0.92840 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.45 0.28 -56.57 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 9 C 0.04 2.19 4.98 29.85 0.15 2.33 16 10 C -0.04 -1.75 5.88 71.98 0.42 -1.32 16 11 S -0.31 -11.11 21.74 -56.49 -1.23 -12.34 16 12 C -0.08 -1.88 6.05 71.98 0.44 -1.45 16 13 C 0.14 3.39 5.68 86.38 0.49 3.88 16 14 N -0.71 -12.44 5.52 -463.07 -2.56 -15.00 16 15 C 0.51 10.99 7.14 87.66 0.63 11.61 16 16 O -0.59 -18.62 15.44 -3.03 -0.05 -18.67 16 17 C -0.11 -1.43 3.24 -10.46 -0.03 -1.46 16 18 C -0.11 -1.09 6.32 32.01 0.20 -0.89 16 19 C -0.12 -0.96 6.84 31.79 0.22 -0.74 16 20 C -0.12 -1.36 6.80 31.32 0.21 -1.15 16 21 C -0.12 -1.82 6.17 31.32 0.19 -1.62 16 22 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 23 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 24 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 25 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 26 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 27 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.42 4.20 8.47 -92.70 -0.79 3.42 16 32 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.76 8.05 -2.39 -0.02 0.74 16 35 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.05 1.17 6.88 -2.39 -0.02 1.15 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -71.80 342.10 2.31 -69.49 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.21 Total: 8.00 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 3.61 Total: -20.20 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -2.27 Total: -71.57 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.05 Total: -18.67 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -11.11 SS G_CDS: -1.23 Total: -12.34 kcal Total: -71.80 2.31 -69.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190981384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.671 kcal (2) G-P(sol) polarization free energy of solvation -71.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds