Wall clock time and date at job start Mon Mar 30 2020 05:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86300 * 109.47317 * 2 1 4 4 C 1.86301 * 109.47289 * 239.99610 * 2 1 3 5 5 O 1.63104 * 109.46945 * 119.99569 * 2 1 3 6 6 C 1.42899 * 113.99928 * 60.00376 * 5 2 1 7 7 C 1.52995 * 109.47482 * 149.99736 * 6 5 2 8 8 C 1.50700 * 109.47193 * 294.99908 * 7 6 5 9 9 O 1.21281 * 119.99615 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99759 * 179.97438 * 8 7 6 11 11 C 1.47016 * 125.65394 * 359.68876 * 10 8 7 12 12 C 1.54315 * 107.28011 * 180.96785 * 11 10 8 13 13 C 1.55163 * 102.86054 * 22.52927 * 12 11 10 14 14 C 1.47425 * 125.64380 * 179.97438 * 10 8 7 15 15 C 1.50706 * 109.46966 * 269.99933 * 6 5 2 16 16 N 1.27936 * 120.00444 * 114.72375 * 15 6 5 17 17 Si 1.86803 * 119.99620 * 294.99945 * 15 6 5 18 18 H 1.48501 * 109.47085 * 89.99884 * 17 15 6 19 19 H 1.48497 * 109.46789 * 209.99894 * 17 15 6 20 20 H 1.48495 * 109.47179 * 329.99687 * 17 15 6 21 21 H 1.09004 * 109.46795 * 300.00340 * 1 2 3 22 22 H 1.08994 * 109.46710 * 60.00273 * 1 2 3 23 23 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46983 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.46624 * 299.99475 * 3 2 1 26 26 H 1.08998 * 109.47330 * 59.99682 * 3 2 1 27 27 H 1.09003 * 109.47217 * 300.00195 * 4 2 1 28 28 H 1.09000 * 109.47043 * 59.99664 * 4 2 1 29 29 H 1.08994 * 109.47206 * 180.02562 * 4 2 1 30 30 H 1.09007 * 109.47471 * 29.99518 * 6 5 2 31 31 H 1.09007 * 109.47224 * 54.99453 * 7 6 5 32 32 H 1.09004 * 109.47589 * 174.99891 * 7 6 5 33 33 H 1.08997 * 109.88125 * 300.51733 * 11 10 8 34 34 H 1.09005 * 109.87772 * 61.67849 * 11 10 8 35 35 H 1.08994 * 110.92415 * 264.11396 * 12 11 10 36 36 H 1.08996 * 110.59059 * 140.78827 * 12 11 10 37 37 H 1.08997 * 110.99919 * 206.22927 * 13 12 11 38 38 H 1.08993 * 111.00441 * 82.37368 * 13 12 11 39 39 H 1.08998 * 110.36755 * 274.67531 * 14 10 8 40 40 H 1.09002 * 110.36814 * 36.88351 * 14 10 8 41 41 H 0.97000 * 120.00474 * 180.02562 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5211 5 8 2.4066 -0.7688 1.3318 6 6 1.9850 -2.1307 1.4296 7 6 3.0433 -2.9395 2.1823 8 6 4.3166 -2.9732 1.3770 9 8 4.3719 -2.4065 0.3061 10 7 5.3938 -3.6331 1.8468 11 6 5.4664 -4.3541 3.1260 12 6 6.8938 -4.9276 3.2485 13 6 7.7157 -4.0138 2.3014 14 6 6.6963 -3.7466 1.1656 15 6 0.6766 -2.1992 2.1743 16 7 -0.3810 -2.5970 1.5743 17 14 0.5975 -1.6960 3.9715 18 1 0.2906 -0.2461 4.0665 19 1 -0.4663 -2.4731 4.6567 20 1 1.9053 -1.9687 4.6199 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.5741 1.7564 0.0005 25 1 2.1208 2.2702 -0.8901 26 1 2.1207 2.2703 0.8899 27 1 2.1207 -1.9060 -1.5210 28 1 2.1207 -0.3646 -2.4111 29 1 3.5740 -0.8787 -1.5208 30 1 1.8557 -2.5437 0.4291 31 1 3.2370 -2.4739 3.1488 32 1 2.6828 -3.9568 2.3347 33 1 5.2684 -3.6683 3.9497 34 1 4.7403 -5.1670 3.1350 35 1 6.9275 -5.9632 2.9104 36 1 7.2539 -4.8436 4.2739 37 1 8.5951 -4.5343 1.9225 38 1 7.9971 -3.0865 2.8003 39 1 6.6852 -4.5789 0.4620 40 1 6.9365 -2.8173 0.6490 41 1 -1.2232 -2.6408 2.0535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203627652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:11 Heat of formation + Delta-G solvation = -93.426515 kcal Electronic energy + Delta-G solvation = -20296.318310 eV Core-core repulsion = 17334.658009 eV Total energy + Delta-G solvation = -2961.660301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07252 -39.18819 -37.87321 -35.78325 -33.12747 -31.75800 -29.98201 -29.30732 -28.31874 -28.12098 -26.33833 -24.07656 -22.20774 -21.12592 -20.21081 -18.79544 -17.99405 -17.48920 -17.04425 -16.37945 -15.82819 -15.47249 -15.19644 -14.60519 -14.47495 -14.36911 -14.09995 -13.89998 -13.77541 -13.48833 -13.43018 -13.25003 -13.10320 -13.06549 -12.86108 -12.79992 -12.55224 -12.39326 -12.24508 -12.21265 -12.00112 -11.79665 -11.65300 -11.33730 -10.68437 -10.50230 -10.24093 -9.86538 -9.58705 0.59157 0.99946 1.35161 1.52620 1.72026 1.79273 1.85633 2.01693 2.10608 2.32238 2.73245 3.24280 3.51015 3.55198 3.79556 3.84697 4.05370 4.17557 4.22841 4.30316 4.38906 4.54659 4.66752 4.71051 4.78338 4.83752 4.84271 4.85578 4.89027 4.91746 4.93443 5.02047 5.08534 5.11142 5.18664 5.33177 5.41882 5.67972 5.78702 5.96058 6.56201 6.70617 7.30554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.519 4.519 2 Si 1.261 2.739 3 C -0.467 4.467 4 C -0.493 4.493 5 O -0.608 6.608 6 C 0.167 3.833 7 C -0.145 4.145 8 C 0.536 3.464 9 O -0.521 6.521 10 N -0.625 5.625 11 C 0.096 3.904 12 C -0.133 4.133 13 C -0.135 4.135 14 C 0.105 3.895 15 C -0.035 4.035 16 N -0.606 5.606 17 Si 0.931 3.069 18 H -0.233 1.233 19 H -0.249 1.249 20 H -0.228 1.228 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 -2.934 4.761 5.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.620 4.620 2 Si 1.398 2.602 3 C -0.573 4.573 4 C -0.596 4.596 5 O -0.565 6.565 6 C 0.108 3.892 7 C -0.185 4.185 8 C 0.325 3.675 9 O -0.397 6.397 10 N -0.361 5.361 11 C -0.027 4.027 12 C -0.171 4.171 13 C -0.173 4.173 14 C -0.017 4.017 15 C -0.285 4.285 16 N -0.221 5.221 17 Si 0.746 3.254 18 H -0.156 1.156 19 H -0.172 1.172 20 H -0.150 1.150 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.104 0.896 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.486 -2.648 4.273 5.242 hybrid contribution -0.574 0.114 0.135 0.601 sum 0.912 -2.534 4.408 5.165 Atomic orbital electron populations 1.27202 1.25302 1.05641 1.03872 0.77144 0.62894 0.63933 0.56244 1.26324 1.06919 1.19624 1.04440 1.26831 1.07611 1.08136 1.16976 1.85378 1.78256 1.26000 1.66909 1.20174 0.87930 0.82002 0.99081 1.21965 0.93124 1.02232 1.01167 1.20007 0.83758 0.77554 0.86203 1.90707 1.83126 1.43712 1.22147 1.48526 1.12702 1.53461 1.21391 1.22097 0.98438 0.96083 0.86072 1.22643 0.93655 0.99806 1.00993 1.22811 0.97780 1.00464 0.96284 1.22229 0.81850 1.02392 0.95254 1.30944 0.96016 0.94399 1.07135 1.68100 1.02654 1.08797 1.42595 0.85679 0.82781 0.82792 0.74107 1.15611 1.17198 1.15014 0.91866 0.91246 0.89630 0.90809 0.90688 0.91108 0.91644 0.91965 0.90222 0.89141 0.87097 0.87332 0.91069 0.91152 0.90318 0.89775 0.89636 0.90436 0.91414 0.90180 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 -0.85 8.04 101.05 0.81 -0.04 16 2 Si 1.26 1.81 12.22 -169.99 -2.08 -0.27 16 3 C -0.47 -0.70 8.65 101.05 0.87 0.17 16 4 C -0.49 -1.50 7.91 101.05 0.80 -0.70 16 5 O -0.61 -1.23 7.23 -49.64 -0.36 -1.59 16 6 C 0.17 0.17 1.40 -27.88 -0.04 0.14 16 7 C -0.14 0.07 4.03 -27.89 -0.11 -0.04 16 8 C 0.54 1.09 7.73 -10.98 -0.08 1.01 16 9 O -0.52 -2.66 13.87 -8.85 -0.12 -2.78 16 10 N -0.62 -0.19 3.33 -170.51 -0.57 -0.76 16 11 C 0.10 -0.25 6.48 -3.07 -0.02 -0.27 16 12 C -0.13 0.45 6.95 -24.90 -0.17 0.27 16 13 C -0.14 0.33 7.08 -24.57 -0.17 0.16 16 14 C 0.11 -0.02 6.91 -2.52 -0.02 -0.04 16 15 C -0.04 0.00 3.97 -13.90 -0.06 -0.06 16 16 N -0.61 -0.26 11.78 56.22 0.66 0.40 16 17 Si 0.93 -0.81 27.98 -169.99 -4.76 -5.57 16 18 H -0.23 -0.06 7.11 56.52 0.40 0.34 16 19 H -0.25 0.20 7.11 56.52 0.40 0.60 16 20 H -0.23 0.39 6.32 56.52 0.36 0.75 16 21 H 0.06 0.09 7.96 -51.93 -0.41 -0.32 16 22 H 0.07 0.10 7.96 -51.93 -0.41 -0.32 16 23 H 0.08 0.19 5.69 -51.93 -0.30 -0.11 16 24 H 0.07 0.14 7.96 -51.93 -0.41 -0.27 16 25 H 0.07 0.06 7.96 -51.93 -0.41 -0.35 16 26 H 0.07 0.08 7.96 -51.93 -0.41 -0.33 16 27 H 0.06 0.23 7.10 -51.93 -0.37 -0.14 16 28 H 0.06 0.14 7.96 -51.93 -0.41 -0.27 16 29 H 0.08 0.36 7.26 -51.93 -0.38 -0.02 16 30 H 0.09 0.15 5.93 -51.93 -0.31 -0.16 16 31 H 0.11 -0.21 6.41 -51.93 -0.33 -0.54 16 32 H 0.11 -0.33 8.14 -51.93 -0.42 -0.75 16 33 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 34 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 35 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 36 H 0.08 -0.35 8.14 -51.93 -0.42 -0.78 16 37 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 38 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 39 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 40 H 0.08 0.08 8.03 -51.93 -0.42 -0.33 16 41 H 0.34 -0.45 8.23 -40.82 -0.34 -0.79 16 LS Contribution 327.66 15.07 4.94 4.94 Total: 0.00 -4.98 327.66 -7.61 -12.59 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -7.14 Total: -7.57 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 1.81 Total: 0.60 kcal Atomic # 7 Polarization: -0.45 SS G_CDS: 0.09 Total: -0.35 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.48 Total: -4.37 kcal Atomic # 14 Polarization: 0.99 SS G_CDS: -6.83 Total: -5.84 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -4.98 -7.61 -12.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203627652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.835 kcal (2) G-P(sol) polarization free energy of solvation -4.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds