Wall clock time and date at job start Mon Mar 30 2020 05:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86300 * 109.47317 * 2 1 4 4 C 1.86301 * 109.47289 * 239.99610 * 2 1 3 5 5 O 1.63104 * 109.46945 * 119.99569 * 2 1 3 6 6 C 1.42899 * 113.99928 * 60.00376 * 5 2 1 7 7 C 1.52995 * 109.47482 * 149.99736 * 6 5 2 8 8 C 1.50700 * 109.47193 * 294.99908 * 7 6 5 9 9 O 1.21281 * 119.99615 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99759 * 179.97438 * 8 7 6 11 11 C 1.47016 * 125.65394 * 359.68876 * 10 8 7 12 12 C 1.54315 * 107.28011 * 180.96785 * 11 10 8 13 13 C 1.55163 * 102.86054 * 22.52927 * 12 11 10 14 14 C 1.47425 * 125.64380 * 179.97438 * 10 8 7 15 15 C 1.50706 * 109.46966 * 269.99933 * 6 5 2 16 16 N 1.27936 * 120.00444 * 114.72375 * 15 6 5 17 17 Si 1.86803 * 119.99620 * 294.99945 * 15 6 5 18 18 H 1.48501 * 109.47085 * 89.99884 * 17 15 6 19 19 H 1.48497 * 109.46789 * 209.99894 * 17 15 6 20 20 H 1.48495 * 109.47179 * 329.99687 * 17 15 6 21 21 H 1.09004 * 109.46795 * 300.00340 * 1 2 3 22 22 H 1.08994 * 109.46710 * 60.00273 * 1 2 3 23 23 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46983 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.46624 * 299.99475 * 3 2 1 26 26 H 1.08998 * 109.47330 * 59.99682 * 3 2 1 27 27 H 1.09003 * 109.47217 * 300.00195 * 4 2 1 28 28 H 1.09000 * 109.47043 * 59.99664 * 4 2 1 29 29 H 1.08994 * 109.47206 * 180.02562 * 4 2 1 30 30 H 1.09007 * 109.47471 * 29.99518 * 6 5 2 31 31 H 1.09007 * 109.47224 * 54.99453 * 7 6 5 32 32 H 1.09004 * 109.47589 * 174.99891 * 7 6 5 33 33 H 1.08997 * 109.88125 * 300.51733 * 11 10 8 34 34 H 1.09005 * 109.87772 * 61.67849 * 11 10 8 35 35 H 1.08994 * 110.92415 * 264.11396 * 12 11 10 36 36 H 1.08996 * 110.59059 * 140.78827 * 12 11 10 37 37 H 1.08997 * 110.99919 * 206.22927 * 13 12 11 38 38 H 1.08993 * 111.00441 * 82.37368 * 13 12 11 39 39 H 1.08998 * 110.36755 * 274.67531 * 14 10 8 40 40 H 1.09002 * 110.36814 * 36.88351 * 14 10 8 41 41 H 0.97000 * 120.00474 * 180.02562 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5211 5 8 2.4066 -0.7688 1.3318 6 6 1.9850 -2.1307 1.4296 7 6 3.0433 -2.9395 2.1823 8 6 4.3166 -2.9732 1.3770 9 8 4.3719 -2.4065 0.3061 10 7 5.3938 -3.6331 1.8468 11 6 5.4664 -4.3541 3.1260 12 6 6.8938 -4.9276 3.2485 13 6 7.7157 -4.0138 2.3014 14 6 6.6963 -3.7466 1.1656 15 6 0.6766 -2.1992 2.1743 16 7 -0.3810 -2.5970 1.5743 17 14 0.5975 -1.6960 3.9715 18 1 0.2906 -0.2461 4.0665 19 1 -0.4663 -2.4731 4.6567 20 1 1.9053 -1.9687 4.6199 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.5741 1.7564 0.0005 25 1 2.1208 2.2702 -0.8901 26 1 2.1207 2.2703 0.8899 27 1 2.1207 -1.9060 -1.5210 28 1 2.1207 -0.3646 -2.4111 29 1 3.5740 -0.8787 -1.5208 30 1 1.8557 -2.5437 0.4291 31 1 3.2370 -2.4739 3.1488 32 1 2.6828 -3.9568 2.3347 33 1 5.2684 -3.6683 3.9497 34 1 4.7403 -5.1670 3.1350 35 1 6.9275 -5.9632 2.9104 36 1 7.2539 -4.8436 4.2739 37 1 8.5951 -4.5343 1.9225 38 1 7.9971 -3.0865 2.8003 39 1 6.6852 -4.5789 0.4620 40 1 6.9365 -2.8173 0.6490 41 1 -1.2232 -2.6408 2.0535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203627652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:11 Heat of formation + Delta-G solvation = -85.138054 kcal Electronic energy + Delta-G solvation = -20295.958895 eV Core-core repulsion = 17334.658009 eV Total energy + Delta-G solvation = -2961.300886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.10108 -39.17524 -37.92510 -35.81513 -33.12654 -31.70385 -29.84945 -29.48072 -28.46245 -28.32837 -26.34372 -23.99719 -22.03134 -21.13185 -20.19549 -18.82522 -18.00912 -17.39145 -17.07355 -16.41701 -15.83809 -15.48109 -15.18616 -14.52821 -14.39974 -14.26033 -14.18929 -14.00785 -13.81317 -13.57314 -13.45835 -13.32189 -13.21177 -13.10351 -13.03750 -12.87541 -12.61717 -12.24786 -12.15867 -12.09029 -11.96475 -11.68591 -11.57310 -11.36548 -10.81190 -10.65917 -10.39786 -9.86496 -9.58878 0.61462 1.06612 1.45798 1.52028 1.70142 1.75255 1.93515 1.95776 2.06221 2.19111 2.59051 3.29860 3.63065 3.72899 3.82954 4.06026 4.10713 4.27659 4.36107 4.43792 4.52118 4.66910 4.73774 4.74223 4.75771 4.78098 4.80917 4.81274 4.88635 4.89251 4.91165 4.99402 5.03763 5.15188 5.30440 5.33831 5.43024 5.56155 5.64371 5.67648 6.56878 6.78782 7.23744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.519 4.519 2 Si 1.288 2.712 3 C -0.472 4.472 4 C -0.501 4.501 5 O -0.616 6.616 6 C 0.157 3.843 7 C -0.143 4.143 8 C 0.525 3.475 9 O -0.564 6.564 10 N -0.627 5.627 11 C 0.088 3.912 12 C -0.128 4.128 13 C -0.129 4.129 14 C 0.098 3.902 15 C -0.035 4.035 16 N -0.622 5.622 17 Si 0.952 3.048 18 H -0.251 1.251 19 H -0.247 1.247 20 H -0.209 1.209 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 -3.518 6.573 7.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.621 4.621 2 Si 1.423 2.577 3 C -0.578 4.578 4 C -0.601 4.601 5 O -0.573 6.573 6 C 0.099 3.901 7 C -0.182 4.182 8 C 0.315 3.685 9 O -0.443 6.443 10 N -0.362 5.362 11 C -0.034 4.034 12 C -0.166 4.166 13 C -0.168 4.168 14 C -0.025 4.025 15 C -0.283 4.283 16 N -0.239 5.239 17 Si 0.767 3.233 18 H -0.175 1.175 19 H -0.171 1.171 20 H -0.131 1.131 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.099 0.901 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.375 -3.276 6.092 7.052 hybrid contribution -0.512 0.272 -0.484 0.756 sum 0.863 -3.004 5.607 6.420 Atomic orbital electron populations 1.27205 1.25236 1.05417 1.04223 0.76681 0.62577 0.63478 0.54999 1.26366 1.06553 1.19794 1.05127 1.27010 1.06283 1.08038 1.18775 1.85372 1.78497 1.26609 1.66848 1.20315 0.89141 0.81649 0.98998 1.22053 0.91427 1.03717 1.01045 1.20527 0.84810 0.77174 0.86003 1.90689 1.83941 1.45643 1.24016 1.48680 1.12262 1.52942 1.22324 1.22363 0.99455 0.96641 0.84897 1.22664 0.92841 0.99639 1.01445 1.22781 0.97559 1.00824 0.95587 1.22282 0.82767 1.01199 0.96207 1.31043 0.95341 0.94146 1.07812 1.68080 1.03217 1.09194 1.43394 0.85399 0.83699 0.81399 0.72836 1.17527 1.17071 1.13064 0.91427 0.90951 0.90140 0.91412 0.89970 0.90480 0.92619 0.91612 0.92163 0.90584 0.85310 0.84599 0.89775 0.89571 0.89838 0.88328 0.88695 0.90654 0.91708 0.92329 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 -1.95 8.04 113.37 0.91 -1.04 16 2 Si 1.29 5.18 12.22 68.60 0.84 6.02 16 3 C -0.47 -1.72 8.65 113.37 0.98 -0.74 16 4 C -0.50 -4.24 7.91 113.37 0.90 -3.35 16 5 O -0.62 -2.97 7.23 -135.21 -0.98 -3.95 16 6 C 0.16 0.40 1.40 29.85 0.04 0.45 16 7 C -0.14 0.21 4.03 29.85 0.12 0.33 16 8 C 0.53 2.59 7.73 87.66 0.68 3.27 16 9 O -0.56 -7.08 13.87 10.74 0.15 -6.93 16 10 N -0.63 -0.55 3.33 -811.77 -2.70 -3.25 16 11 C 0.09 -0.58 6.48 86.73 0.56 -0.02 16 12 C -0.13 1.04 6.95 31.78 0.22 1.26 16 13 C -0.13 0.66 7.08 32.00 0.23 0.88 16 14 C 0.10 0.08 6.91 86.86 0.60 0.68 16 15 C -0.04 0.01 3.97 88.68 0.35 0.36 16 16 N -0.62 -0.60 11.78 24.11 0.28 -0.32 16 17 Si 0.95 -2.74 27.98 68.60 1.92 -0.82 16 18 H -0.25 -0.04 7.11 99.48 0.71 0.66 16 19 H -0.25 0.75 7.11 99.48 0.71 1.46 16 20 H -0.21 1.23 6.32 99.48 0.63 1.86 16 21 H 0.07 0.20 7.96 -2.38 -0.02 0.18 16 22 H 0.07 0.22 7.96 -2.39 -0.02 0.20 16 23 H 0.08 0.41 5.69 -2.39 -0.01 0.39 16 24 H 0.07 0.33 7.96 -2.39 -0.02 0.32 16 25 H 0.08 0.16 7.96 -2.39 -0.02 0.14 16 26 H 0.08 0.18 7.96 -2.39 -0.02 0.16 16 27 H 0.05 0.55 7.10 -2.39 -0.02 0.53 16 28 H 0.06 0.44 7.96 -2.39 -0.02 0.42 16 29 H 0.06 0.74 7.26 -2.39 -0.02 0.72 16 30 H 0.08 0.39 5.93 -2.38 -0.01 0.37 16 31 H 0.13 -0.69 6.41 -2.38 -0.02 -0.70 16 32 H 0.14 -1.02 8.14 -2.38 -0.02 -1.04 16 33 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.09 -0.81 8.14 -2.38 -0.02 -0.83 16 35 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 36 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 37 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 39 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.06 0.28 8.03 -2.39 -0.02 0.26 16 41 H 0.35 -0.94 8.23 -92.71 -0.76 -1.70 16 Total: 0.00 -13.34 327.66 6.02 -7.33 By element: Atomic # 1 Polarization: -1.08 SS G_CDS: 0.91 Total: -0.16 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 5.59 Total: 2.08 kcal Atomic # 7 Polarization: -1.15 SS G_CDS: -2.42 Total: -3.57 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.83 Total: -10.88 kcal Atomic # 14 Polarization: 2.44 SS G_CDS: 2.76 Total: 5.20 kcal Total: -13.34 6.02 -7.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203627652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.809 kcal (2) G-P(sol) polarization free energy of solvation -13.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds