Wall clock time and date at job start Mon Mar 30 2020 04:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46951 * 2 1 4 4 C 1.34642 * 117.00159 * 180.02562 * 3 2 1 5 5 O 1.21514 * 119.99512 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00043 * 180.02562 * 4 3 2 7 7 C 1.46968 * 120.59112 * 179.97438 * 6 4 3 8 8 C 1.53371 * 108.63131 * 235.24288 * 7 6 4 9 9 N 1.46961 * 108.63776 * 310.57566 * 8 7 6 10 10 C 1.34769 * 120.59498 * 235.20177 * 9 8 7 11 11 O 1.21582 * 120.00137 * 5.21175 * 10 9 8 12 12 N 1.34783 * 120.00048 * 185.20773 * 10 9 8 13 13 C 1.37189 * 119.99654 * 174.78781 * 12 10 9 14 14 H 1.07998 * 120.00527 * 359.97438 * 13 12 10 15 15 C 1.38884 * 119.99783 * 179.97438 * 13 12 10 16 16 N 1.31478 * 119.99646 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00024 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46946 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46653 * 120.00113 * 17 15 13 20 20 H 1.48501 * 109.47232 * 239.99661 * 17 15 13 21 21 C 1.46967 * 118.81016 * 55.47866 * 9 8 7 22 22 C 1.46961 * 120.59664 * 0.02562 * 6 4 3 23 23 H 1.08997 * 109.47192 * 300.00234 * 1 2 3 24 24 H 1.08999 * 109.46755 * 60.00199 * 1 2 3 25 25 H 1.08998 * 109.46940 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47192 * 239.99766 * 2 1 3 27 27 H 1.08999 * 109.47190 * 119.99489 * 2 1 3 28 28 H 1.09002 * 109.60796 * 115.50268 * 7 6 4 29 29 H 1.09000 * 109.75136 * 355.07372 * 7 6 4 30 30 H 1.09003 * 109.60866 * 190.82745 * 8 7 6 31 31 H 1.09008 * 109.75012 * 70.40505 * 8 7 6 32 32 H 0.97001 * 119.99756 * 355.06118 * 12 10 9 33 33 H 0.97000 * 119.99526 * 179.97438 * 16 15 13 34 34 H 1.09006 * 109.61163 * 64.26676 * 21 9 8 35 35 H 1.09000 * 109.60823 * 184.77859 * 21 9 8 36 36 H 1.09003 * 109.60836 * 244.50077 * 22 6 4 37 37 H 1.09008 * 109.60770 * 4.83751 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5455 -0.0005 5 8 4.0890 0.5818 -0.0005 6 7 3.8639 2.7909 0.0000 7 6 5.3188 2.9986 -0.0001 8 6 5.6869 3.8875 1.1943 9 7 4.8038 5.0622 1.1953 10 6 5.3189 6.3076 1.1967 11 8 6.5202 6.4687 1.1015 12 7 4.5022 7.3745 1.3035 13 6 5.0318 8.6354 1.4126 14 1 6.1030 8.7731 1.4133 15 6 4.1903 9.7348 1.5221 16 7 2.8863 9.5673 1.5207 17 14 4.9113 11.4516 1.6714 18 1 6.3938 11.3696 1.6474 19 1 4.4437 12.2853 0.5350 20 1 4.4695 12.0646 2.9497 21 6 3.3489 4.8545 1.2009 22 6 2.9808 3.9656 0.0016 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 5.6184 3.4883 -0.9266 29 1 5.8279 2.0388 0.0876 30 1 6.7243 4.2098 1.1045 31 1 5.5559 3.3306 2.1222 32 1 3.5402 7.2505 1.3072 33 1 2.2986 10.3351 1.5976 34 1 3.0530 4.3632 2.1279 35 1 2.8418 5.8156 1.1154 36 1 3.1135 4.5243 -0.9248 37 1 1.9432 3.6431 0.0889 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264534.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:28 Heat of formation + Delta-G solvation = -91.361388 kcal Electronic energy + Delta-G solvation = -21291.231676 eV Core-core repulsion = 17876.569874 eV Total energy + Delta-G solvation = -3414.661802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.68700 -39.28767 -37.39682 -36.20450 -34.13908 -33.59836 -31.97620 -31.41539 -30.64979 -27.54283 -24.95784 -23.75943 -23.46466 -22.31291 -20.64162 -19.16168 -18.36444 -17.76903 -17.01904 -16.76996 -16.34067 -15.28002 -14.92089 -14.84799 -14.78952 -14.49129 -13.78389 -13.59819 -13.49773 -13.09808 -12.95493 -12.79657 -12.33429 -12.06446 -11.84152 -11.50763 -11.41325 -11.35220 -11.10187 -11.08112 -10.66109 -10.49455 -10.28911 -10.12765 -9.59044 -9.10265 -8.88155 -8.05979 -7.82243 -6.34402 -3.76071 2.03486 2.77222 3.21814 3.29587 3.35181 3.52028 3.80773 4.22400 4.30199 4.73019 4.76116 4.90788 4.96008 5.07093 5.17831 5.29456 5.30597 5.32120 5.43642 5.52810 5.55640 5.63086 5.73543 5.78603 5.97486 6.07731 6.14937 6.25077 6.40467 7.08033 7.27476 7.54314 7.65873 8.22162 8.34456 8.69636 9.22720 9.62390 10.11826 10.85382 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.032348 B = 0.004084 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.381980 B = 6854.419886 C = 7600.814142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.370 6.370 4 C 0.651 3.349 5 O -0.579 6.579 6 N -0.589 5.589 7 C 0.113 3.887 8 C 0.122 3.878 9 N -0.643 5.643 10 C 0.660 3.340 11 O -0.621 6.621 12 N -0.586 5.586 13 C -0.285 4.285 14 H 0.102 0.898 15 C 0.017 3.983 16 N -0.912 5.912 17 Si 0.930 3.070 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.101 3.899 22 C 0.098 3.902 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.391 0.609 33 H 0.269 0.731 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.462 -15.685 -2.680 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 O -0.284 6.284 4 C 0.405 3.595 5 O -0.469 6.469 6 N -0.329 5.329 7 C -0.009 4.009 8 C -0.003 4.003 9 N -0.383 5.383 10 C 0.363 3.637 11 O -0.504 6.504 12 N -0.229 5.229 13 C -0.415 4.415 14 H 0.120 0.880 15 C -0.183 4.183 16 N -0.555 5.555 17 Si 0.758 3.242 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.024 4.024 22 C -0.026 4.026 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.227 0.773 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.577 -15.707 -2.716 16.888 hybrid contribution -0.423 0.741 0.075 0.857 sum -6.000 -14.966 -2.642 16.339 Atomic orbital electron populations 1.21826 0.92597 1.02943 1.03654 1.22921 0.94765 0.78928 1.02633 1.86234 1.22183 1.32908 1.87063 1.17980 0.81097 0.84039 0.76337 1.90966 1.59826 1.39396 1.56724 1.46895 1.07708 1.02924 1.75412 1.22175 0.77406 1.01397 0.99941 1.21628 0.96754 0.85466 0.96415 1.47080 1.04940 1.04814 1.81505 1.15805 0.85651 0.79917 0.82358 1.90729 1.13766 1.84292 1.61607 1.41188 1.07956 1.04429 1.69312 1.19636 0.94088 0.81030 1.46728 0.87997 1.25156 0.95187 0.99839 0.98104 1.69633 1.02071 1.31607 1.52144 0.85785 0.79127 0.81713 0.77606 1.19372 1.20906 1.20921 1.21963 0.82672 1.00454 0.97307 1.22276 0.94332 0.86153 0.99813 0.91364 0.91447 0.90135 0.91334 0.91275 0.90429 0.87963 0.87507 0.92203 0.77329 0.92168 0.91659 0.88405 0.90430 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.29 37.16 0.38 -0.63 16 2 C 0.08 0.78 6.19 37.16 0.23 1.01 16 3 O -0.37 -4.59 8.85 -40.33 -0.36 -4.95 16 4 C 0.65 9.47 8.43 54.06 0.46 9.93 16 5 O -0.58 -9.71 15.54 -19.28 -0.30 -10.01 16 6 N -0.59 -8.20 2.95 -178.04 -0.52 -8.73 16 7 C 0.11 1.57 6.59 -3.59 -0.02 1.54 16 8 C 0.12 1.93 6.60 -3.60 -0.02 1.90 16 9 N -0.64 -11.85 2.94 -177.98 -0.52 -12.37 16 10 C 0.66 15.78 8.25 -86.92 -0.72 15.06 16 11 O -0.62 -16.94 15.34 5.29 0.08 -16.86 16 12 N -0.59 -14.82 5.20 -15.34 -0.08 -14.90 16 13 C -0.29 -7.94 9.68 -14.92 -0.14 -8.09 16 14 H 0.10 2.98 7.17 -52.49 -0.38 2.61 16 15 C 0.02 0.46 5.50 -17.46 -0.10 0.37 16 16 N -0.91 -24.68 13.05 55.49 0.72 -23.95 16 17 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.10 1.52 6.59 -3.40 -0.02 1.50 16 22 C 0.10 1.26 6.62 -3.40 -0.02 1.24 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.10 1.36 7.00 -51.93 -0.36 0.99 16 30 H 0.11 1.81 6.99 -51.93 -0.36 1.45 16 31 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.39 9.34 5.37 -40.82 -0.22 9.12 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.55 5.61 -51.93 -0.29 1.26 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 1.11 6.91 -51.92 -0.36 0.75 16 LS Contribution 310.11 15.07 4.67 4.67 Total: -1.00 -33.16 310.11 -6.22 -39.38 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.91 Total: 7.79 kcal Atomic # 6 Polarization: 23.82 SS G_CDS: 0.02 Total: 23.84 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.40 Total: -59.96 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.58 Total: -31.82 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.16 -6.22 -39.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264534.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.983 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds