Wall clock time and date at job start Mon Mar 30 2020 04:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46951 * 2 1 4 4 C 1.34642 * 117.00159 * 180.02562 * 3 2 1 5 5 O 1.21514 * 119.99512 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00043 * 180.02562 * 4 3 2 7 7 C 1.46968 * 120.59112 * 179.97438 * 6 4 3 8 8 C 1.53371 * 108.63131 * 235.24288 * 7 6 4 9 9 N 1.46961 * 108.63776 * 310.57566 * 8 7 6 10 10 C 1.34769 * 120.59498 * 235.20177 * 9 8 7 11 11 O 1.21582 * 120.00137 * 5.21175 * 10 9 8 12 12 N 1.34783 * 120.00048 * 185.20773 * 10 9 8 13 13 C 1.37189 * 119.99654 * 174.78781 * 12 10 9 14 14 H 1.07998 * 120.00527 * 359.97438 * 13 12 10 15 15 C 1.38884 * 119.99783 * 179.97438 * 13 12 10 16 16 N 1.31478 * 119.99646 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00024 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46946 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46653 * 120.00113 * 17 15 13 20 20 H 1.48501 * 109.47232 * 239.99661 * 17 15 13 21 21 C 1.46967 * 118.81016 * 55.47866 * 9 8 7 22 22 C 1.46961 * 120.59664 * 0.02562 * 6 4 3 23 23 H 1.08997 * 109.47192 * 300.00234 * 1 2 3 24 24 H 1.08999 * 109.46755 * 60.00199 * 1 2 3 25 25 H 1.08998 * 109.46940 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47192 * 239.99766 * 2 1 3 27 27 H 1.08999 * 109.47190 * 119.99489 * 2 1 3 28 28 H 1.09002 * 109.60796 * 115.50268 * 7 6 4 29 29 H 1.09000 * 109.75136 * 355.07372 * 7 6 4 30 30 H 1.09003 * 109.60866 * 190.82745 * 8 7 6 31 31 H 1.09008 * 109.75012 * 70.40505 * 8 7 6 32 32 H 0.97001 * 119.99756 * 355.06118 * 12 10 9 33 33 H 0.97000 * 119.99526 * 179.97438 * 16 15 13 34 34 H 1.09006 * 109.61163 * 64.26676 * 21 9 8 35 35 H 1.09000 * 109.60823 * 184.77859 * 21 9 8 36 36 H 1.09003 * 109.60836 * 244.50077 * 22 6 4 37 37 H 1.09008 * 109.60770 * 4.83751 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5455 -0.0005 5 8 4.0890 0.5818 -0.0005 6 7 3.8639 2.7909 0.0000 7 6 5.3188 2.9986 -0.0001 8 6 5.6869 3.8875 1.1943 9 7 4.8038 5.0622 1.1953 10 6 5.3189 6.3076 1.1967 11 8 6.5202 6.4687 1.1015 12 7 4.5022 7.3745 1.3035 13 6 5.0318 8.6354 1.4126 14 1 6.1030 8.7731 1.4133 15 6 4.1903 9.7348 1.5221 16 7 2.8863 9.5673 1.5207 17 14 4.9113 11.4516 1.6714 18 1 6.3938 11.3696 1.6474 19 1 4.4437 12.2853 0.5350 20 1 4.4695 12.0646 2.9497 21 6 3.3489 4.8545 1.2009 22 6 2.9808 3.9656 0.0016 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 5.6184 3.4883 -0.9266 29 1 5.8279 2.0388 0.0876 30 1 6.7243 4.2098 1.1045 31 1 5.5559 3.3306 2.1222 32 1 3.5402 7.2505 1.3072 33 1 2.2986 10.3351 1.5976 34 1 3.0530 4.3632 2.1279 35 1 2.8418 5.8156 1.1154 36 1 3.1135 4.5243 -0.9248 37 1 1.9432 3.6431 0.0889 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264534.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:28 Heat of formation + Delta-G solvation = -114.112936 kcal Electronic energy + Delta-G solvation = -21292.218257 eV Core-core repulsion = 17876.569874 eV Total energy + Delta-G solvation = -3415.648383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.84109 -40.86955 -38.71408 -37.40966 -36.09540 -35.06714 -33.39126 -32.51875 -32.07236 -28.91577 -26.77793 -25.00031 -24.51022 -23.40770 -21.91862 -20.54480 -20.23869 -19.26585 -18.22084 -17.90390 -17.69833 -16.96774 -16.36837 -16.29746 -16.01975 -15.76072 -15.28847 -14.90939 -14.75430 -14.69311 -14.26065 -13.69907 -13.49095 -13.34012 -12.92655 -12.88109 -12.79400 -12.61799 -12.45637 -12.37456 -12.16968 -12.06839 -11.65726 -11.54703 -11.50390 -10.85817 -10.38366 -10.01040 -9.32913 -8.38924 -5.86520 0.99709 1.42658 1.45403 1.58899 1.64438 2.00587 2.34775 2.44696 2.77917 3.29827 3.56686 3.75776 3.93702 4.06613 4.07012 4.11597 4.14499 4.30644 4.37932 4.45130 4.64200 4.69697 4.76453 4.80339 4.92509 4.97515 5.15570 5.22861 5.40106 5.43999 5.61618 5.82476 6.17790 6.42165 6.74069 7.12009 7.18540 7.68453 8.19538 8.80693 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.032348 B = 0.004084 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.381980 B = 6854.419886 C = 7600.814142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 O -0.369 6.369 4 C 0.652 3.348 5 O -0.604 6.604 6 N -0.590 5.590 7 C 0.123 3.877 8 C 0.123 3.877 9 N -0.637 5.637 10 C 0.660 3.340 11 O -0.662 6.662 12 N -0.594 5.594 13 C -0.317 4.317 14 H 0.078 0.922 15 C -0.017 4.017 16 N -0.928 5.928 17 Si 0.993 3.007 18 H -0.274 1.274 19 H -0.273 1.273 20 H -0.273 1.273 21 C 0.100 3.900 22 C 0.107 3.893 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.396 0.604 33 H 0.275 0.725 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.944 -16.223 -2.745 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.000 4.000 3 O -0.283 6.283 4 C 0.407 3.593 5 O -0.496 6.496 6 N -0.330 5.330 7 C 0.000 4.000 8 C -0.002 4.002 9 N -0.377 5.377 10 C 0.362 3.638 11 O -0.548 6.548 12 N -0.238 5.238 13 C -0.447 4.447 14 H 0.096 0.904 15 C -0.215 4.215 16 N -0.570 5.570 17 Si 0.817 3.183 18 H -0.199 1.199 19 H -0.198 1.198 20 H -0.198 1.198 21 C -0.024 4.024 22 C -0.016 4.016 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.121 0.879 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.121 -16.296 -2.785 18.001 hybrid contribution -0.014 0.798 0.104 0.805 sum -7.135 -15.498 -2.681 17.271 Atomic orbital electron populations 1.21843 0.90169 1.04494 1.03746 1.23247 0.96576 0.77590 1.02633 1.86251 1.20699 1.34706 1.86608 1.18051 0.81678 0.83689 0.75848 1.90950 1.60621 1.40163 1.57834 1.46917 1.07698 1.03167 1.75211 1.22033 0.77826 1.01228 0.98879 1.21760 0.95600 0.84684 0.98113 1.47063 1.06881 1.03589 1.80124 1.16021 0.85029 0.81181 0.81603 1.90687 1.15538 1.85400 1.63136 1.41130 1.08262 1.04252 1.70120 1.19582 0.93376 0.82757 1.48947 0.90408 1.25913 0.95549 1.02940 0.97112 1.69694 1.02757 1.32867 1.51710 0.84861 0.78037 0.77245 0.78121 1.19906 1.19828 1.19826 1.22145 0.80241 1.00725 0.99262 1.22250 0.95366 0.85372 0.98594 0.91281 0.91274 0.87852 0.91345 0.91372 0.90398 0.87052 0.89010 0.90696 0.76734 0.91590 0.89957 0.89291 0.90434 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.29 71.98 0.74 -0.81 16 2 C 0.07 1.26 6.19 71.98 0.45 1.70 16 3 O -0.37 -8.35 8.85 -55.51 -0.49 -8.84 16 4 C 0.65 17.78 8.43 129.79 1.09 18.87 16 5 O -0.60 -19.39 15.54 19.80 0.31 -19.08 16 6 N -0.59 -15.36 2.95 -947.58 -2.79 -18.15 16 7 C 0.12 3.26 6.59 86.41 0.57 3.83 16 8 C 0.12 3.79 6.60 86.42 0.57 4.36 16 9 N -0.64 -23.27 2.94 -835.26 -2.46 -25.73 16 10 C 0.66 32.07 8.25 179.05 1.48 33.55 16 11 O -0.66 -37.18 15.34 -3.97 -0.06 -37.24 16 12 N -0.59 -30.56 5.20 -320.70 -1.67 -32.22 16 13 C -0.32 -18.00 9.68 84.01 0.81 -17.19 16 14 H 0.08 4.72 7.17 -2.91 -0.02 4.70 16 15 C -0.02 -0.88 5.50 84.90 0.47 -0.42 16 16 N -0.93 -49.67 13.05 21.66 0.28 -49.39 16 17 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 21 C 0.10 2.88 6.59 86.54 0.57 3.45 16 22 C 0.11 2.55 6.62 86.54 0.57 3.13 16 23 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.11 2.81 7.00 -2.39 -0.02 2.80 16 30 H 0.09 3.15 6.99 -2.39 -0.02 3.13 16 31 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.40 19.09 5.37 -92.71 -0.50 18.60 16 33 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 34 H 0.08 2.12 8.14 -2.38 -0.02 2.11 16 35 H 0.09 2.76 5.61 -2.39 -0.01 2.75 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.12 2.39 6.91 -2.38 -0.02 2.38 16 Total: -1.00 -70.90 310.11 3.06 -67.84 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.59 Total: 27.30 kcal Atomic # 6 Polarization: 43.16 SS G_CDS: 7.32 Total: 50.48 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -6.63 Total: -125.50 kcal Atomic # 8 Polarization: -64.92 SS G_CDS: -0.24 Total: -65.16 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -70.90 3.06 -67.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264534.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.276 kcal (2) G-P(sol) polarization free energy of solvation -70.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds