Wall clock time and date at job start Mon Mar 30 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47519 * 2 1 4 4 C 1.36937 * 120.00226 * 95.56048 * 3 2 1 5 5 H 1.07998 * 119.99791 * 219.21920 * 4 3 2 6 6 C 1.38806 * 120.00167 * 39.21153 * 4 3 2 7 7 N 1.31622 * 119.99950 * 26.02421 * 6 4 3 8 8 Si 1.86797 * 120.00234 * 206.02141 * 6 4 3 9 9 H 1.48501 * 109.47164 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47347 * 120.00142 * 8 6 4 11 11 H 1.48504 * 109.47510 * 239.99905 * 8 6 4 12 12 C 1.46497 * 119.99946 * 275.55891 * 3 2 1 13 13 H 1.09001 * 109.53445 * 359.84200 * 12 3 2 14 14 C 1.53167 * 109.53639 * 239.60774 * 12 3 2 15 15 C 1.53093 * 109.12087 * 183.16813 * 14 12 3 16 16 O 1.42849 * 109.44284 * 57.60623 * 15 14 12 17 17 C 1.43282 * 114.01284 * 298.52014 * 16 15 14 18 18 C 1.52577 * 109.38052 * 301.91289 * 17 16 15 19 19 C 1.54170 * 112.71439 * 239.91574 * 18 17 16 20 20 S 1.83936 * 102.58462 * 24.49223 * 19 18 17 21 21 C 1.54521 * 108.27985 * 179.24620 * 17 16 15 22 22 C 1.53130 * 109.53594 * 119.99823 * 12 3 2 23 23 H 1.08998 * 109.47354 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47035 * 300.00658 * 1 2 3 25 25 H 1.09001 * 109.46331 * 59.99965 * 1 2 3 26 26 H 1.09002 * 109.47477 * 239.99172 * 2 1 3 27 27 H 1.09011 * 109.46763 * 119.99702 * 2 1 3 28 28 H 0.97006 * 120.00104 * 5.35961 * 7 6 4 29 29 H 1.09000 * 109.52979 * 303.06020 * 14 12 3 30 30 H 1.08997 * 109.53018 * 63.27680 * 14 12 3 31 31 H 1.09000 * 109.47508 * 297.61456 * 15 14 12 32 32 H 1.08999 * 109.47093 * 177.59980 * 15 14 12 33 33 H 1.08995 * 108.84263 * 0.76895 * 18 17 16 34 34 H 1.08999 * 108.84454 * 119.06346 * 18 17 16 35 35 H 1.08999 * 110.79137 * 142.76436 * 19 18 17 36 36 H 1.09005 * 110.78645 * 266.21978 * 19 18 17 37 37 H 1.09004 * 110.77922 * 214.43438 * 21 17 16 38 38 H 1.09000 * 110.77386 * 337.85324 * 21 17 16 39 39 H 1.08997 * 109.52835 * 296.99633 * 22 12 3 40 40 H 1.08993 * 109.52833 * 57.14078 * 22 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3550 1.9884 1.1803 5 1 2.1089 3.0274 1.3424 6 6 3.0124 1.2685 2.1684 7 7 3.7538 0.2307 1.8436 8 14 2.8448 1.7727 3.9593 9 1 1.9618 2.9626 4.0580 10 1 2.2544 0.6530 4.7356 11 1 4.1846 2.1030 4.5080 12 6 2.1467 2.1127 -1.2627 13 1 1.8378 1.4716 -2.0884 14 6 3.6042 2.5398 -1.4614 15 6 3.7131 3.3706 -2.7427 16 8 2.8417 4.4990 -2.6532 17 6 1.4567 4.1571 -2.5204 18 6 1.0297 3.3028 -3.7103 19 6 -0.1076 3.9468 -4.5280 20 16 0.0902 5.7359 -4.1496 21 6 0.6421 5.4660 -2.4163 22 6 1.2601 3.3606 -1.2240 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9041 0.0152 0.9098 29 1 3.9276 3.1388 -0.6102 30 1 4.2349 1.6548 -1.5463 31 1 3.4280 2.7582 -3.5982 32 1 4.7402 3.7134 -2.8672 33 1 1.8902 3.1520 -4.3622 34 1 0.6945 2.3322 -3.3447 35 1 0.0276 3.7595 -5.5932 36 1 -1.0791 3.5852 -4.1908 37 1 -0.2137 5.3373 -1.7536 38 1 1.2732 6.2883 -2.0791 39 1 0.2155 3.0627 -1.1342 40 1 1.5375 3.9783 -0.3699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227169780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:17 Heat of formation + Delta-G solvation = -33.003159 kcal Electronic energy + Delta-G solvation = -20474.108434 eV Core-core repulsion = 17608.270449 eV Total energy + Delta-G solvation = -2865.837985 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.90062 -36.29009 -34.28163 -32.46530 -31.20833 -30.54248 -28.38425 -27.17638 -24.48828 -24.07816 -22.97013 -21.58220 -20.09958 -18.69122 -17.00675 -16.77712 -16.10208 -15.59369 -14.96355 -14.34800 -14.22804 -14.03171 -13.64397 -13.47424 -13.23287 -13.00063 -12.62542 -12.43480 -12.22324 -11.91059 -11.59711 -11.24787 -11.10457 -11.04099 -10.89373 -10.75881 -10.66025 -10.34179 -10.14209 -10.08155 -9.95986 -9.66916 -9.25760 -9.02102 -8.34627 -7.70455 -6.82323 -6.06475 -3.41119 1.87175 2.27250 3.48237 3.49431 3.63666 3.91581 4.47493 4.53482 4.77869 4.82109 4.99655 5.16154 5.30094 5.37481 5.41014 5.43812 5.54029 5.64788 5.70400 5.76952 5.81962 5.87942 6.02914 6.05937 6.08784 6.21452 6.35890 6.40622 6.55317 6.60302 6.63350 6.90870 7.02030 7.10478 7.25288 7.50548 8.12570 8.57975 9.11511 9.79565 10.26719 11.13141 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.025379 B = 0.005802 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.026526 B = 4824.471541 C = 4959.031115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 N -0.588 5.588 4 C -0.348 4.348 5 H 0.050 0.950 6 C -0.015 4.015 7 N -0.905 5.905 8 Si 1.063 2.937 9 H -0.291 1.291 10 H -0.290 1.290 11 H -0.294 1.294 12 C 0.177 3.823 13 H 0.046 0.954 14 C -0.157 4.157 15 C 0.059 3.941 16 O -0.369 6.369 17 C 0.120 3.880 18 C -0.154 4.154 19 C -0.060 4.060 20 S -0.306 6.306 21 C -0.047 4.047 22 C -0.142 4.142 23 H 0.035 0.965 24 H 0.052 0.948 25 H 0.034 0.966 26 H 0.022 0.978 27 H 0.076 0.924 28 H 0.269 0.731 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.600 4.560 -10.451 12.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 N -0.309 5.309 4 C -0.478 4.478 5 H 0.067 0.933 6 C -0.219 4.219 7 N -0.543 5.543 8 Si 0.893 3.107 9 H -0.217 1.217 10 H -0.217 1.217 11 H -0.221 1.221 12 C 0.070 3.930 13 H 0.064 0.936 14 C -0.196 4.196 15 C -0.018 4.018 16 O -0.288 6.288 17 C 0.078 3.922 18 C -0.193 4.193 19 C -0.208 4.208 20 S -0.080 6.080 21 C -0.195 4.195 22 C -0.183 4.183 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.306 5.345 -9.560 12.170 hybrid contribution -0.290 -0.844 -0.865 1.243 sum -5.595 4.500 -10.425 12.659 Atomic orbital electron populations 1.22290 1.00139 0.98953 1.00699 1.20902 0.91078 0.86862 1.00136 1.43962 1.74257 1.11102 1.01555 1.19717 1.36400 0.98078 0.93559 0.93283 1.25905 0.93254 0.97937 1.04770 1.70727 1.32151 1.30397 1.20990 0.83566 0.75894 0.75413 0.75800 1.21734 1.21670 1.22084 1.20368 0.91885 0.91431 0.89335 0.93595 1.22567 0.99739 0.99852 0.97469 1.22669 0.93566 0.88201 0.97352 1.88039 1.15166 1.31538 1.94104 1.22191 0.83025 0.92293 0.94668 1.22756 0.98826 1.00600 0.97121 1.24051 1.01425 0.91951 1.03376 1.87831 1.89174 1.13060 1.17887 1.24269 1.01502 0.99996 0.93774 1.22755 1.00881 0.98846 0.95794 0.94562 0.92896 0.94711 0.95982 0.90573 0.92008 0.90265 0.91933 0.93820 0.89504 0.89674 0.89592 0.87986 0.89295 0.88085 0.86815 0.91823 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.23 37.16 0.38 -2.67 16 2 C 0.14 3.00 5.42 -4.04 -0.02 2.98 16 3 N -0.59 -13.49 2.11 -165.49 -0.35 -13.84 16 4 C -0.35 -9.04 8.03 -15.06 -0.12 -9.16 16 5 H 0.05 1.32 6.86 -52.49 -0.36 0.96 16 6 C -0.01 -0.40 4.74 -17.43 -0.08 -0.48 16 7 N -0.90 -25.88 12.35 55.49 0.69 -25.19 16 8 Si 1.06 24.69 29.99 -169.99 -5.10 19.59 16 9 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.18 3.42 2.44 -67.78 -0.17 3.25 16 13 H 0.05 0.84 6.31 -51.93 -0.33 0.51 16 14 C -0.16 -2.98 5.44 -26.60 -0.14 -3.12 16 15 C 0.06 0.92 6.48 37.21 0.24 1.16 16 16 O -0.37 -6.15 10.09 -35.23 -0.36 -6.50 16 17 C 0.12 1.80 0.96 -89.82 -0.09 1.71 16 18 C -0.15 -1.99 4.78 -26.34 -0.13 -2.12 16 19 C -0.06 -0.68 7.46 37.77 0.28 -0.40 16 20 S -0.31 -4.18 23.26 -107.50 -2.50 -6.68 16 21 C -0.05 -0.66 6.59 37.96 0.25 -0.41 16 22 C -0.14 -2.48 3.80 -26.45 -0.10 -2.58 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 27 H 0.08 1.92 5.84 -51.92 -0.30 1.62 16 28 H 0.27 7.76 7.40 -40.82 -0.30 7.45 16 29 H 0.08 1.74 7.56 -51.93 -0.39 1.35 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.04 0.61 6.16 -51.93 -0.32 0.29 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.09 6.05 -51.93 -0.31 0.78 16 34 H 0.09 1.11 6.22 -51.93 -0.32 0.79 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.10 1.30 7.85 -51.93 -0.41 0.89 16 38 H 0.11 1.60 8.03 -51.93 -0.42 1.18 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.58 6.90 -51.93 -0.36 1.22 16 LS Contribution 313.87 15.07 4.73 4.73 Total: -1.00 -28.11 313.87 -9.01 -37.12 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.42 Total: 2.63 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 0.30 Total: -11.85 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.34 Total: -39.04 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.36 Total: -6.50 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.10 Total: 19.59 kcal Atomic # 16 Polarization: -4.18 SS G_CDS: -2.50 Total: -6.68 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.11 -9.01 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227169780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.113 kcal (2) G-P(sol) polarization free energy of solvation -28.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds