Wall clock time and date at job start Mon Mar 30 2020 05:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47519 * 2 1 4 4 C 1.36937 * 120.00226 * 95.56048 * 3 2 1 5 5 H 1.07998 * 119.99791 * 219.21920 * 4 3 2 6 6 C 1.38806 * 120.00167 * 39.21153 * 4 3 2 7 7 N 1.31622 * 119.99950 * 26.02421 * 6 4 3 8 8 Si 1.86797 * 120.00234 * 206.02141 * 6 4 3 9 9 H 1.48501 * 109.47164 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47347 * 120.00142 * 8 6 4 11 11 H 1.48504 * 109.47510 * 239.99905 * 8 6 4 12 12 C 1.46497 * 119.99946 * 275.55891 * 3 2 1 13 13 H 1.09001 * 109.53445 * 359.84200 * 12 3 2 14 14 C 1.53167 * 109.53639 * 239.60774 * 12 3 2 15 15 C 1.53093 * 109.12087 * 183.16813 * 14 12 3 16 16 O 1.42849 * 109.44284 * 57.60623 * 15 14 12 17 17 C 1.43282 * 114.01284 * 298.52014 * 16 15 14 18 18 C 1.52577 * 109.38052 * 301.91289 * 17 16 15 19 19 C 1.54170 * 112.71439 * 239.91574 * 18 17 16 20 20 S 1.83936 * 102.58462 * 24.49223 * 19 18 17 21 21 C 1.54521 * 108.27985 * 179.24620 * 17 16 15 22 22 C 1.53130 * 109.53594 * 119.99823 * 12 3 2 23 23 H 1.08998 * 109.47354 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47035 * 300.00658 * 1 2 3 25 25 H 1.09001 * 109.46331 * 59.99965 * 1 2 3 26 26 H 1.09002 * 109.47477 * 239.99172 * 2 1 3 27 27 H 1.09011 * 109.46763 * 119.99702 * 2 1 3 28 28 H 0.97006 * 120.00104 * 5.35961 * 7 6 4 29 29 H 1.09000 * 109.52979 * 303.06020 * 14 12 3 30 30 H 1.08997 * 109.53018 * 63.27680 * 14 12 3 31 31 H 1.09000 * 109.47508 * 297.61456 * 15 14 12 32 32 H 1.08999 * 109.47093 * 177.59980 * 15 14 12 33 33 H 1.08995 * 108.84263 * 0.76895 * 18 17 16 34 34 H 1.08999 * 108.84454 * 119.06346 * 18 17 16 35 35 H 1.08999 * 110.79137 * 142.76436 * 19 18 17 36 36 H 1.09005 * 110.78645 * 266.21978 * 19 18 17 37 37 H 1.09004 * 110.77922 * 214.43438 * 21 17 16 38 38 H 1.09000 * 110.77386 * 337.85324 * 21 17 16 39 39 H 1.08997 * 109.52835 * 296.99633 * 22 12 3 40 40 H 1.08993 * 109.52833 * 57.14078 * 22 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3550 1.9884 1.1803 5 1 2.1089 3.0274 1.3424 6 6 3.0124 1.2685 2.1684 7 7 3.7538 0.2307 1.8436 8 14 2.8448 1.7727 3.9593 9 1 1.9618 2.9626 4.0580 10 1 2.2544 0.6530 4.7356 11 1 4.1846 2.1030 4.5080 12 6 2.1467 2.1127 -1.2627 13 1 1.8378 1.4716 -2.0884 14 6 3.6042 2.5398 -1.4614 15 6 3.7131 3.3706 -2.7427 16 8 2.8417 4.4990 -2.6532 17 6 1.4567 4.1571 -2.5204 18 6 1.0297 3.3028 -3.7103 19 6 -0.1076 3.9468 -4.5280 20 16 0.0902 5.7359 -4.1496 21 6 0.6421 5.4660 -2.4163 22 6 1.2601 3.3606 -1.2240 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9041 0.0152 0.9098 29 1 3.9276 3.1388 -0.6102 30 1 4.2349 1.6548 -1.5463 31 1 3.4280 2.7582 -3.5982 32 1 4.7402 3.7134 -2.8672 33 1 1.8902 3.1520 -4.3622 34 1 0.6945 2.3322 -3.3447 35 1 0.0276 3.7595 -5.5932 36 1 -1.0791 3.5852 -4.1908 37 1 -0.2137 5.3373 -1.7536 38 1 1.2732 6.2883 -2.0791 39 1 0.2155 3.0627 -1.1342 40 1 1.5375 3.9783 -0.3699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227169780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:16 Heat of formation + Delta-G solvation = -48.009649 kcal Electronic energy + Delta-G solvation = -20474.759164 eV Core-core repulsion = 17608.270449 eV Total energy + Delta-G solvation = -2866.488715 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23510 -38.01115 -35.45278 -34.18923 -32.99382 -31.67194 -30.03413 -28.51593 -26.24539 -25.32741 -24.39959 -23.07167 -21.83509 -20.05964 -18.79167 -17.89300 -17.37334 -17.03856 -16.46449 -15.77167 -15.63544 -15.51101 -15.34379 -14.89809 -14.53640 -14.39690 -14.14949 -13.88881 -13.71638 -12.93800 -12.83373 -12.77495 -12.69578 -12.59396 -12.43715 -12.29843 -12.05412 -11.93360 -11.88968 -11.75218 -11.30330 -11.09680 -10.95253 -10.45240 -10.28508 -8.80072 -8.73941 -8.10625 -5.47273 0.85161 1.26819 1.57088 1.62592 1.78923 2.62804 2.70696 3.21634 3.38356 3.45758 3.70608 3.82816 4.00211 4.01597 4.14026 4.27879 4.33046 4.35312 4.42263 4.44511 4.51771 4.61441 4.70074 4.73034 4.74645 4.80678 4.88167 4.92027 5.03987 5.08422 5.16498 5.33877 5.38181 5.49618 5.53666 6.03160 6.24277 6.47539 7.19400 7.83340 8.28947 9.01872 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.025379 B = 0.005802 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.026526 B = 4824.471541 C = 4959.031115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 N -0.602 5.602 4 C -0.337 4.337 5 H 0.034 0.966 6 C -0.064 4.064 7 N -0.931 5.931 8 Si 1.104 2.896 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.294 1.294 12 C 0.174 3.826 13 H 0.066 0.934 14 C -0.150 4.150 15 C 0.067 3.933 16 O -0.383 6.383 17 C 0.123 3.877 18 C -0.151 4.151 19 C -0.048 4.048 20 S -0.328 6.328 21 C -0.046 4.046 22 C -0.129 4.129 23 H 0.059 0.941 24 H 0.034 0.966 25 H 0.053 0.947 26 H 0.033 0.967 27 H 0.040 0.960 28 H 0.256 0.744 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.034 4.680 -12.271 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.009 3.991 3 N -0.323 5.323 4 C -0.467 4.467 5 H 0.052 0.948 6 C -0.262 4.262 7 N -0.572 5.572 8 Si 0.930 3.070 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.221 1.221 12 C 0.067 3.933 13 H 0.084 0.916 14 C -0.189 4.189 15 C -0.010 4.010 16 O -0.303 6.303 17 C 0.081 3.919 18 C -0.190 4.190 19 C -0.195 4.195 20 S -0.102 6.102 21 C -0.194 4.194 22 C -0.170 4.170 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.759 5.480 -11.404 14.345 hybrid contribution 0.142 -0.871 -0.364 0.955 sum -6.617 4.609 -11.768 14.266 Atomic orbital electron populations 1.22111 0.97373 1.00539 1.00679 1.20880 0.93188 0.86081 0.98957 1.44151 1.74578 1.11534 1.02066 1.19742 1.34707 0.97427 0.94843 0.94786 1.26954 0.93273 0.98090 1.07910 1.70836 1.34370 1.32003 1.19966 0.83000 0.75966 0.75601 0.72402 1.20319 1.21385 1.22127 1.20551 0.92383 0.92104 0.88247 0.91571 1.22451 0.99246 0.99217 0.98014 1.22656 0.94480 0.87882 0.95964 1.88042 1.16070 1.32104 1.94035 1.22263 0.82589 0.92802 0.94221 1.22682 0.99773 1.00229 0.96321 1.24160 1.01520 0.89350 1.04483 1.87955 1.89128 1.15675 1.17419 1.24210 1.01543 0.99215 0.94449 1.22564 1.00463 0.97671 0.96272 0.92190 0.94663 0.92843 0.94845 0.94160 0.93452 0.94273 0.93224 0.91188 0.88132 0.89046 0.89106 0.85762 0.87706 0.87261 0.87497 0.91299 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 10.23 71.98 0.74 -4.58 16 2 C 0.13 5.88 5.42 86.38 0.47 6.35 16 3 N -0.60 -27.76 2.11 -677.49 -1.43 -29.20 16 4 C -0.34 -17.89 8.03 84.03 0.67 -17.21 16 5 H 0.03 1.90 6.86 -2.91 -0.02 1.88 16 6 C -0.06 -3.52 4.74 84.86 0.40 -3.12 16 7 N -0.93 -54.84 12.35 21.65 0.27 -54.57 16 8 Si 1.10 50.74 29.99 68.60 2.06 52.79 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 C 0.17 6.55 2.44 45.09 0.11 6.66 16 13 H 0.07 2.24 6.31 -2.39 -0.02 2.23 16 14 C -0.15 -5.71 5.44 30.68 0.17 -5.54 16 15 C 0.07 1.98 6.48 72.01 0.47 2.45 16 16 O -0.38 -12.17 10.09 -148.98 -1.50 -13.68 16 17 C 0.12 3.45 0.96 -10.28 -0.01 3.44 16 18 C -0.15 -3.37 4.78 30.85 0.15 -3.22 16 19 C -0.05 -0.89 7.46 72.38 0.54 -0.35 16 20 S -0.33 -8.15 23.26 -56.49 -1.31 -9.47 16 21 C -0.05 -1.21 6.59 72.50 0.48 -0.74 16 22 C -0.13 -4.39 3.80 30.78 0.12 -4.28 16 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.03 1.36 8.04 -2.39 -0.02 1.34 16 27 H 0.04 2.06 5.84 -2.38 -0.01 2.05 16 28 H 0.26 15.28 7.40 -92.70 -0.69 14.59 16 29 H 0.04 1.78 7.56 -2.39 -0.02 1.76 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.74 6.16 -2.39 -0.01 1.72 16 32 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.09 1.96 6.05 -2.39 -0.01 1.95 16 34 H 0.09 1.97 6.22 -2.39 -0.01 1.96 16 35 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.11 2.65 7.85 -2.38 -0.02 2.63 16 38 H 0.11 2.93 8.03 -2.39 -0.02 2.91 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.05 1.88 6.90 -2.39 -0.02 1.87 16 Total: -1.00 -61.90 313.87 3.47 -58.44 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 1.10 Total: 15.82 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 4.30 Total: -20.14 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -1.16 Total: -83.77 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.50 Total: -13.68 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.06 Total: 52.79 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.31 Total: -9.47 kcal Total: -61.90 3.47 -58.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227169780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.426 kcal (2) G-P(sol) polarization free energy of solvation -61.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds