Wall clock time and date at job start Mon Mar 30 2020 05:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.47121 * 2 1 4 4 C 1.36936 * 120.00244 * 85.03455 * 3 2 1 5 5 H 1.07991 * 119.99837 * 209.75383 * 4 3 2 6 6 C 1.38810 * 119.99565 * 29.75232 * 4 3 2 7 7 N 1.31617 * 120.00456 * 40.69232 * 6 4 3 8 8 Si 1.86805 * 119.99712 * 220.68876 * 6 4 3 9 9 H 1.48501 * 109.46853 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.47260 * 59.99929 * 8 6 4 11 11 H 1.48501 * 109.46942 * 299.99996 * 8 6 4 12 12 C 1.46501 * 119.99631 * 265.03734 * 3 2 1 13 13 H 1.09002 * 109.53875 * 359.97438 * 12 3 2 14 14 C 1.53172 * 109.53682 * 120.16155 * 12 3 2 15 15 C 1.53084 * 109.17743 * 176.75310 * 14 12 3 16 16 O 1.42863 * 109.44634 * 302.46821 * 15 14 12 17 17 C 1.43296 * 113.92864 * 61.49913 * 16 15 14 18 18 C 1.52577 * 109.37159 * 178.67438 * 17 16 15 19 19 C 1.54181 * 112.70231 * 239.89240 * 18 17 16 20 20 S 1.83937 * 102.58931 * 24.49406 * 19 18 17 21 21 C 1.54523 * 108.28833 * 55.98865 * 17 16 15 22 22 C 1.53151 * 109.53651 * 239.83576 * 12 3 2 23 23 H 1.09000 * 109.46593 * 300.00162 * 1 2 3 24 24 H 1.08997 * 109.46567 * 60.00064 * 1 2 3 25 25 H 1.08992 * 109.46820 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47413 * 240.00235 * 2 1 3 27 27 H 1.08997 * 109.47420 * 119.99600 * 2 1 3 28 28 H 0.97004 * 119.99676 * 5.83361 * 7 6 4 29 29 H 1.08994 * 109.52200 * 296.66968 * 14 12 3 30 30 H 1.09003 * 109.51506 * 56.85048 * 14 12 3 31 31 H 1.09005 * 109.47298 * 62.46612 * 15 14 12 32 32 H 1.09005 * 109.47357 * 182.47391 * 15 14 12 33 33 H 1.08994 * 108.84412 * 0.73974 * 18 17 16 34 34 H 1.08996 * 108.84157 * 119.04174 * 18 17 16 35 35 H 1.08996 * 110.78379 * 142.77071 * 19 18 17 36 36 H 1.09002 * 110.78711 * 266.03041 * 19 18 17 37 37 H 1.08999 * 110.77578 * 214.44825 * 21 17 16 38 38 H 1.09000 * 110.77575 * 337.87022 * 21 17 16 39 39 H 1.09000 * 109.53651 * 302.72990 * 22 12 3 40 40 H 1.08993 * 109.54210 * 62.98982 * 22 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1499 2.0610 1.1814 5 1 2.0333 3.1344 1.2026 6 6 2.4330 1.3703 2.3517 7 7 3.3006 0.3807 2.3384 8 14 1.5825 1.8454 3.9456 9 1 2.0553 0.9617 5.0414 10 1 0.1137 1.6953 3.7868 11 1 1.9029 3.2573 4.2759 12 6 2.3660 2.0352 -1.2640 13 1 2.1983 1.3442 -2.0902 14 6 1.4950 3.2810 -1.4527 15 6 1.9200 4.0023 -2.7343 16 8 3.3068 4.3362 -2.6547 17 6 4.1721 3.2003 -2.5342 18 6 5.6226 3.6715 -2.4907 19 6 6.4699 3.0964 -3.6434 20 16 5.2045 2.7313 -4.9275 21 6 3.8982 2.2537 -3.7244 22 6 3.8394 2.4521 -1.2367 23 1 -0.3632 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.8047 0.1885 1.5322 29 1 0.4488 2.9856 -1.5308 30 1 1.6235 3.9477 -0.5999 31 1 1.7518 3.3500 -3.5913 32 1 1.3329 4.9134 -2.8503 33 1 5.6412 4.7597 -2.5491 34 1 6.0640 3.3650 -1.5424 35 1 7.1848 3.8359 -4.0041 36 1 6.9816 2.1863 -3.3307 37 1 4.0114 1.2121 -3.4239 38 1 2.9063 2.4318 -4.1397 39 1 4.0173 3.1069 -0.3837 40 1 4.4678 1.5653 -1.1545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227169784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:20 Heat of formation + Delta-G solvation = -27.134423 kcal Electronic energy + Delta-G solvation = -20440.906945 eV Core-core repulsion = 17575.323448 eV Total energy + Delta-G solvation = -2865.583497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.87291 -36.28272 -34.46887 -32.58031 -31.16400 -29.86698 -28.78168 -27.33033 -24.65582 -23.75823 -23.30186 -21.13531 -20.00191 -18.97343 -17.19154 -16.57524 -16.21481 -15.33653 -14.98606 -14.63786 -14.36153 -14.02848 -13.63921 -13.54715 -12.98239 -12.79503 -12.42878 -12.37427 -12.13140 -11.93686 -11.77255 -11.30400 -11.12737 -10.97971 -10.87655 -10.76683 -10.69195 -10.24399 -10.10701 -10.05838 -9.97511 -9.70234 -9.39850 -9.03490 -8.22917 -7.67839 -6.90586 -6.17178 -3.23285 1.89478 2.30380 3.47528 3.53349 3.69804 3.88856 4.50994 4.56471 4.80624 4.94183 4.99117 5.06769 5.17595 5.30554 5.39117 5.43715 5.57378 5.64709 5.70098 5.78124 5.85908 5.91433 6.05787 6.11242 6.12303 6.20479 6.38111 6.46115 6.55674 6.58427 6.64883 6.93305 7.01005 7.08331 7.28005 7.48478 8.10400 8.53259 9.07743 9.81845 10.28039 11.04400 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.025389 B = 0.005888 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.553711 B = 4753.912213 C = 4960.899730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.135 3.865 3 N -0.585 5.585 4 C -0.363 4.363 5 H 0.054 0.946 6 C -0.008 4.008 7 N -0.882 5.882 8 Si 1.039 2.961 9 H -0.287 1.287 10 H -0.293 1.293 11 H -0.292 1.292 12 C 0.176 3.824 13 H 0.046 0.954 14 C -0.161 4.161 15 C 0.058 3.942 16 O -0.368 6.368 17 C 0.121 3.879 18 C -0.116 4.116 19 C -0.060 4.060 20 S -0.308 6.308 21 C -0.091 4.091 22 C -0.138 4.138 23 H 0.054 0.946 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.269 0.731 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 3.647 -10.601 11.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 N -0.306 5.306 4 C -0.491 4.491 5 H 0.071 0.929 6 C -0.213 4.213 7 N -0.519 5.519 8 Si 0.869 3.131 9 H -0.213 1.213 10 H -0.221 1.221 11 H -0.219 1.219 12 C 0.069 3.931 13 H 0.064 0.936 14 C -0.201 4.201 15 C -0.019 4.019 16 O -0.287 6.287 17 C 0.079 3.921 18 C -0.155 4.155 19 C -0.208 4.208 20 S -0.081 6.081 21 C -0.239 4.239 22 C -0.179 4.179 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.523 3.458 -10.222 10.898 hybrid contribution -0.117 0.147 -0.354 0.401 sum 1.407 3.605 -10.577 11.262 Atomic orbital electron populations 1.22210 0.99804 0.98823 1.00991 1.20880 0.91755 0.86495 0.99928 1.44032 1.73609 1.11475 1.01498 1.19561 1.50395 0.93154 0.86009 0.92864 1.25579 0.96633 0.98386 1.00719 1.70812 1.17238 1.34015 1.29815 0.83907 0.76795 0.75603 0.76781 1.21322 1.22085 1.21939 1.20378 0.90966 0.92386 0.89413 0.93571 1.22619 1.00315 0.99568 0.97588 1.22696 0.82086 0.99948 0.97166 1.88034 1.16115 1.30529 1.94050 1.22263 0.90172 0.85644 0.93982 1.21966 0.91585 1.03150 0.98785 1.24104 0.98128 1.03979 0.94621 1.87773 1.14123 1.89075 1.17156 1.25115 1.00132 1.02909 0.95753 1.22784 0.99568 1.00030 0.95532 0.92651 0.94599 0.94678 0.95615 0.91167 0.92126 0.91787 0.90581 0.93649 0.89396 0.89308 0.89355 0.87779 0.89172 0.88527 0.87011 0.89947 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 10.21 37.16 0.38 -2.76 16 2 C 0.14 2.99 5.90 -4.04 -0.02 2.97 16 3 N -0.59 -13.41 2.31 -165.47 -0.38 -13.80 16 4 C -0.36 -9.41 7.97 -15.06 -0.12 -9.53 16 5 H 0.05 1.44 6.89 -52.49 -0.36 1.08 16 6 C -0.01 -0.21 4.52 -17.43 -0.08 -0.28 16 7 N -0.88 -24.96 12.21 55.49 0.68 -24.28 16 8 Si 1.04 24.44 30.06 -169.99 -5.11 19.34 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.18 3.39 2.45 -67.76 -0.17 3.22 16 13 H 0.05 0.84 6.67 -51.93 -0.35 0.49 16 14 C -0.16 -2.87 5.44 -26.60 -0.14 -3.01 16 15 C 0.06 0.87 6.53 37.20 0.24 1.12 16 16 O -0.37 -6.09 10.08 -35.23 -0.36 -6.45 16 17 C 0.12 1.87 1.01 -89.82 -0.09 1.78 16 18 C -0.12 -1.57 5.84 -26.33 -0.15 -1.72 16 19 C -0.06 -0.71 7.46 37.77 0.28 -0.43 16 20 S -0.31 -4.33 23.26 -107.50 -2.50 -6.83 16 21 C -0.09 -1.31 5.17 37.96 0.20 -1.11 16 22 C -0.14 -2.54 3.72 -26.43 -0.10 -2.64 16 23 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.52 7.82 -51.93 -0.41 0.11 16 27 H 0.07 1.76 5.70 -51.93 -0.30 1.47 16 28 H 0.27 7.66 8.11 -40.82 -0.33 7.33 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.54 6.85 -51.93 -0.36 1.18 16 31 H 0.05 0.63 5.69 -51.93 -0.30 0.33 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.19 7.86 -51.93 -0.41 0.79 16 34 H 0.09 1.17 7.55 -51.93 -0.39 0.78 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.10 1.38 7.63 -51.93 -0.40 0.98 16 38 H 0.11 1.57 5.38 -51.93 -0.28 1.29 16 39 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 40 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 LS Contribution 314.28 15.07 4.74 4.74 Total: -1.00 -27.87 314.28 -9.15 -37.02 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.44 Total: 2.67 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 0.22 Total: -12.40 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.30 Total: -38.08 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.36 Total: -6.45 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.11 Total: 19.34 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -2.50 Total: -6.83 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.87 -9.15 -37.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227169784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.886 kcal (2) G-P(sol) polarization free energy of solvation -27.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds