Wall clock time and date at job start Mon Mar 30 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.47121 * 2 1 4 4 C 1.36936 * 120.00244 * 85.03455 * 3 2 1 5 5 H 1.07991 * 119.99837 * 209.75383 * 4 3 2 6 6 C 1.38810 * 119.99565 * 29.75232 * 4 3 2 7 7 N 1.31617 * 120.00456 * 40.69232 * 6 4 3 8 8 Si 1.86805 * 119.99712 * 220.68876 * 6 4 3 9 9 H 1.48501 * 109.46853 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.47260 * 59.99929 * 8 6 4 11 11 H 1.48501 * 109.46942 * 299.99996 * 8 6 4 12 12 C 1.46501 * 119.99631 * 265.03734 * 3 2 1 13 13 H 1.09002 * 109.53875 * 359.97438 * 12 3 2 14 14 C 1.53172 * 109.53682 * 120.16155 * 12 3 2 15 15 C 1.53084 * 109.17743 * 176.75310 * 14 12 3 16 16 O 1.42863 * 109.44634 * 302.46821 * 15 14 12 17 17 C 1.43296 * 113.92864 * 61.49913 * 16 15 14 18 18 C 1.52577 * 109.37159 * 178.67438 * 17 16 15 19 19 C 1.54181 * 112.70231 * 239.89240 * 18 17 16 20 20 S 1.83937 * 102.58931 * 24.49406 * 19 18 17 21 21 C 1.54523 * 108.28833 * 55.98865 * 17 16 15 22 22 C 1.53151 * 109.53651 * 239.83576 * 12 3 2 23 23 H 1.09000 * 109.46593 * 300.00162 * 1 2 3 24 24 H 1.08997 * 109.46567 * 60.00064 * 1 2 3 25 25 H 1.08992 * 109.46820 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47413 * 240.00235 * 2 1 3 27 27 H 1.08997 * 109.47420 * 119.99600 * 2 1 3 28 28 H 0.97004 * 119.99676 * 5.83361 * 7 6 4 29 29 H 1.08994 * 109.52200 * 296.66968 * 14 12 3 30 30 H 1.09003 * 109.51506 * 56.85048 * 14 12 3 31 31 H 1.09005 * 109.47298 * 62.46612 * 15 14 12 32 32 H 1.09005 * 109.47357 * 182.47391 * 15 14 12 33 33 H 1.08994 * 108.84412 * 0.73974 * 18 17 16 34 34 H 1.08996 * 108.84157 * 119.04174 * 18 17 16 35 35 H 1.08996 * 110.78379 * 142.77071 * 19 18 17 36 36 H 1.09002 * 110.78711 * 266.03041 * 19 18 17 37 37 H 1.08999 * 110.77578 * 214.44825 * 21 17 16 38 38 H 1.09000 * 110.77575 * 337.87022 * 21 17 16 39 39 H 1.09000 * 109.53651 * 302.72990 * 22 12 3 40 40 H 1.08993 * 109.54210 * 62.98982 * 22 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1499 2.0610 1.1814 5 1 2.0333 3.1344 1.2026 6 6 2.4330 1.3703 2.3517 7 7 3.3006 0.3807 2.3384 8 14 1.5825 1.8454 3.9456 9 1 2.0553 0.9617 5.0414 10 1 0.1137 1.6953 3.7868 11 1 1.9029 3.2573 4.2759 12 6 2.3660 2.0352 -1.2640 13 1 2.1983 1.3442 -2.0902 14 6 1.4950 3.2810 -1.4527 15 6 1.9200 4.0023 -2.7343 16 8 3.3068 4.3362 -2.6547 17 6 4.1721 3.2003 -2.5342 18 6 5.6226 3.6715 -2.4907 19 6 6.4699 3.0964 -3.6434 20 16 5.2045 2.7313 -4.9275 21 6 3.8982 2.2537 -3.7244 22 6 3.8394 2.4521 -1.2367 23 1 -0.3632 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.8047 0.1885 1.5322 29 1 0.4488 2.9856 -1.5308 30 1 1.6235 3.9477 -0.5999 31 1 1.7518 3.3500 -3.5913 32 1 1.3329 4.9134 -2.8503 33 1 5.6412 4.7597 -2.5491 34 1 6.0640 3.3650 -1.5424 35 1 7.1848 3.8359 -4.0041 36 1 6.9816 2.1863 -3.3307 37 1 4.0114 1.2121 -3.4239 38 1 2.9063 2.4318 -4.1397 39 1 4.0173 3.1069 -0.3837 40 1 4.4678 1.5653 -1.1545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227169784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:19 Heat of formation + Delta-G solvation = -41.890734 kcal Electronic energy + Delta-G solvation = -20441.546827 eV Core-core repulsion = 17575.323448 eV Total energy + Delta-G solvation = -2866.223379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.22132 -38.00238 -35.64974 -34.28106 -32.97292 -31.05751 -30.33311 -28.77114 -26.34494 -25.15543 -24.75691 -22.66292 -21.65567 -20.34797 -18.89178 -17.89198 -17.50284 -16.73824 -16.55198 -15.96404 -15.63926 -15.60301 -15.47988 -14.97581 -14.49388 -14.21060 -13.87697 -13.81165 -13.58800 -13.12803 -13.01781 -12.82835 -12.63710 -12.53163 -12.49000 -12.24302 -12.22077 -11.95368 -11.89902 -11.71079 -11.43732 -11.11010 -10.98129 -10.38166 -10.23227 -8.85139 -8.76584 -8.22471 -5.27812 0.82786 1.23802 1.57123 1.61668 1.81221 2.63769 2.69361 3.09936 3.31562 3.43782 3.75781 3.80469 3.94366 3.99894 4.14833 4.18791 4.26482 4.34385 4.36453 4.41335 4.54081 4.63443 4.71830 4.74796 4.77232 4.81034 4.86882 4.95993 5.01715 5.05381 5.17346 5.35241 5.38790 5.45807 5.54991 6.03687 6.22541 6.42254 7.13601 7.86812 8.30765 8.94270 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.025389 B = 0.005888 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.553711 B = 4753.912213 C = 4960.899730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.132 3.868 3 N -0.598 5.598 4 C -0.351 4.351 5 H 0.036 0.964 6 C -0.054 4.054 7 N -0.908 5.908 8 Si 1.081 2.919 9 H -0.294 1.294 10 H -0.285 1.285 11 H -0.282 1.282 12 C 0.170 3.830 13 H 0.064 0.936 14 C -0.152 4.152 15 C 0.061 3.939 16 O -0.380 6.380 17 C 0.126 3.874 18 C -0.117 4.117 19 C -0.049 4.049 20 S -0.322 6.322 21 C -0.087 4.087 22 C -0.125 4.125 23 H 0.031 0.969 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.255 0.745 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.045 0.955 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 4.104 -12.329 13.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.007 3.993 3 N -0.319 5.319 4 C -0.480 4.480 5 H 0.054 0.946 6 C -0.255 4.255 7 N -0.547 5.547 8 Si 0.908 3.092 9 H -0.220 1.220 10 H -0.212 1.212 11 H -0.208 1.208 12 C 0.063 3.937 13 H 0.082 0.918 14 C -0.192 4.192 15 C -0.015 4.015 16 O -0.299 6.299 17 C 0.085 3.915 18 C -0.156 4.156 19 C -0.197 4.197 20 S -0.096 6.096 21 C -0.235 4.235 22 C -0.166 4.166 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.137 0.863 39 H 0.064 0.936 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.105 3.932 -11.978 12.655 hybrid contribution 0.023 0.021 0.125 0.129 sum 1.128 3.953 -11.854 12.546 Atomic orbital electron populations 1.22059 0.97737 1.00312 1.00513 1.20891 0.93357 0.85879 0.99207 1.44213 1.74017 1.11791 1.01892 1.19543 1.48544 0.92547 0.87387 0.94591 1.26530 0.97018 0.98687 1.03224 1.70918 1.18855 1.35762 1.29166 0.83310 0.76282 0.75652 0.73937 1.22024 1.21170 1.20810 1.20592 0.91646 0.93174 0.88239 0.91835 1.22487 1.00295 0.98312 0.98075 1.22780 0.81605 1.01116 0.96026 1.88037 1.16856 1.31091 1.93937 1.22245 0.91149 0.85475 0.92657 1.21960 0.90691 1.03367 0.99570 1.24192 0.97529 1.05122 0.92858 1.87851 1.14774 1.89118 1.17825 1.25001 1.00798 1.02427 0.95248 1.22584 0.98910 0.99059 0.96091 0.94995 0.93040 0.92239 0.93814 0.94454 0.93572 0.91307 0.93704 0.91516 0.87273 0.89083 0.89643 0.85438 0.87997 0.88544 0.86347 0.93647 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.59 10.21 71.98 0.74 -4.86 16 2 C 0.13 5.81 5.90 86.38 0.51 6.32 16 3 N -0.60 -27.58 2.31 -677.42 -1.56 -29.14 16 4 C -0.35 -18.58 7.97 84.03 0.67 -17.91 16 5 H 0.04 2.02 6.89 -2.92 -0.02 2.00 16 6 C -0.05 -2.95 4.52 84.86 0.38 -2.57 16 7 N -0.91 -52.84 12.21 21.65 0.26 -52.58 16 8 Si 1.08 50.23 30.06 68.60 2.06 52.29 16 9 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.17 6.44 2.45 45.10 0.11 6.55 16 13 H 0.06 2.19 6.67 -2.39 -0.02 2.18 16 14 C -0.15 -5.26 5.44 30.68 0.17 -5.10 16 15 C 0.06 1.70 6.53 72.01 0.47 2.17 16 16 O -0.38 -11.94 10.08 -148.98 -1.50 -13.44 16 17 C 0.13 3.75 1.01 -10.27 -0.01 3.74 16 18 C -0.12 -3.00 5.84 30.85 0.18 -2.82 16 19 C -0.05 -1.04 7.46 72.38 0.54 -0.50 16 20 S -0.32 -8.27 23.26 -56.49 -1.31 -9.59 16 21 C -0.09 -2.31 5.17 72.50 0.37 -1.93 16 22 C -0.13 -4.64 3.72 30.79 0.11 -4.53 16 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.04 1.72 7.82 -2.39 -0.02 1.71 16 27 H 0.04 1.91 5.70 -2.39 -0.01 1.90 16 28 H 0.26 15.10 8.11 -92.71 -0.75 14.35 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.04 1.82 6.85 -2.39 -0.02 1.81 16 31 H 0.07 1.61 5.69 -2.38 -0.01 1.59 16 32 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 33 H 0.09 2.30 7.86 -2.39 -0.02 2.28 16 34 H 0.09 2.23 7.55 -2.39 -0.02 2.21 16 35 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.10 2.57 7.63 -2.39 -0.02 2.55 16 38 H 0.12 2.97 5.38 -2.39 -0.01 2.95 16 39 H 0.04 2.00 7.58 -2.39 -0.02 1.98 16 40 H 0.05 2.02 8.12 -2.39 -0.02 2.00 16 Total: -1.00 -60.69 314.28 3.22 -57.47 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 1.03 Total: 16.41 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 4.24 Total: -21.43 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -1.30 Total: -81.72 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -1.50 Total: -13.44 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 2.06 Total: 52.29 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.31 Total: -9.59 kcal Total: -60.69 3.22 -57.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227169784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.583 kcal (2) G-P(sol) polarization free energy of solvation -60.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds