Wall clock time and date at job start Mon Mar 30 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37105 * 120.00244 * 2 1 4 4 H 1.08000 * 120.00482 * 201.70328 * 3 2 1 5 5 C 1.38945 * 119.99500 * 21.70615 * 3 2 1 6 6 N 1.31419 * 120.00468 * 14.86057 * 5 3 2 7 7 Si 1.86807 * 119.99989 * 194.85797 * 5 3 2 8 8 H 1.48500 * 109.46853 * 89.99707 * 7 5 3 9 9 H 1.48498 * 109.47295 * 210.00119 * 7 5 3 10 10 H 1.48495 * 109.46695 * 330.00136 * 7 5 3 11 11 C 1.34780 * 120.00256 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00043 * 180.02562 * 11 2 1 13 13 C 1.50702 * 119.99791 * 0.27368 * 11 2 1 14 14 H 1.09002 * 115.52816 * 325.58986 * 13 11 2 15 15 C 1.53045 * 117.46932 * 111.11445 * 13 11 2 16 16 H 1.08996 * 117.75721 * 358.91220 * 15 13 11 17 17 C 1.50924 * 117.23075 * 213.58775 * 15 13 11 18 18 C 1.38083 * 120.40659 * 134.94794 * 17 15 13 19 19 C 1.38279 * 119.90183 * 179.97438 * 18 17 15 20 20 C 1.38258 * 120.03941 * 0.04727 * 19 18 17 21 21 C 1.38271 * 120.05089 * 359.95712 * 20 19 18 22 22 C 1.38095 * 119.91285 * 0.04101 * 21 20 19 23 23 C 1.50883 * 120.39628 * 179.97438 * 22 21 20 24 24 C 1.53563 * 108.60261 * 135.94258 * 23 22 21 25 25 C 1.52946 * 117.46747 * 180.08344 * 13 11 2 26 26 H 1.09001 * 118.00062 * 0.30012 * 25 13 11 27 27 H 1.08996 * 109.46842 * 270.55396 * 1 2 3 28 28 H 1.08994 * 109.46784 * 30.54970 * 1 2 3 29 29 H 1.08999 * 109.46885 * 150.55205 * 1 2 3 30 30 H 0.97002 * 120.00325 * 179.97438 * 6 5 3 31 31 H 1.07994 * 120.04779 * 359.97438 * 18 17 15 32 32 H 1.07999 * 119.97828 * 180.02562 * 19 18 17 33 33 H 1.07997 * 119.96856 * 179.97438 * 20 19 18 34 34 H 1.07998 * 120.04142 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.61315 * 255.67211 * 23 22 21 36 36 H 1.08996 * 109.61703 * 16.20510 * 23 22 21 37 37 H 1.09004 * 109.71435 * 183.00201 * 24 23 22 38 38 H 1.09001 * 109.71376 * 303.60718 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1732 1.2205 -0.3459 5 6 1.5297 2.3479 0.4451 6 7 0.4107 2.2734 1.1301 7 14 2.2856 4.0145 0.0697 8 1 1.7526 4.5204 -1.2207 9 1 1.9437 4.9689 1.1548 10 1 3.7614 3.8788 -0.0234 11 6 2.1390 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3855 -2.4723 -0.0073 14 1 0.4455 -2.4750 0.5446 15 6 1.4614 -3.3247 -1.2762 16 1 2.0401 -2.9368 -2.1144 17 6 0.2382 -4.1297 -1.6415 18 6 -0.2219 -4.1502 -2.9433 19 6 -1.3433 -4.8918 -3.2665 20 6 -2.0034 -5.6109 -2.2874 21 6 -1.5427 -5.5902 -0.9839 22 6 -0.4227 -4.8496 -0.6610 23 6 0.0892 -4.8188 0.7580 24 6 1.6168 -4.9729 0.7312 25 6 2.2080 -3.7618 -0.0056 26 1 3.2945 -3.6757 0.0055 27 1 -0.3633 0.0099 1.0276 28 1 -0.3633 0.8850 -0.5223 29 1 -0.3633 -0.8949 -0.5052 30 1 -0.0226 3.0836 1.4411 31 1 0.2934 -3.5879 -3.7079 32 1 -1.7039 -4.9091 -4.2844 33 1 -2.8794 -6.1894 -2.5410 34 1 -2.0582 -6.1522 -0.2192 35 1 -0.1746 -3.8681 1.2215 36 1 -0.3515 -5.6395 1.3239 37 1 2.0009 -5.0065 1.7507 38 1 1.8846 -5.8902 0.2068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227417808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:49 Heat of formation + Delta-G solvation = 18.005683 kcal Electronic energy + Delta-G solvation = -20589.256516 eV Core-core repulsion = 17590.186490 eV Total energy + Delta-G solvation = -2999.070027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56499 -38.40398 -36.63804 -34.58787 -32.79264 -31.55789 -30.52664 -29.46930 -26.53806 -25.34442 -24.15658 -23.18282 -21.87859 -21.49426 -19.07749 -18.08295 -16.98275 -16.61854 -16.07434 -15.32574 -15.10012 -14.48606 -14.16163 -14.11410 -13.86102 -13.54059 -13.21869 -12.93265 -12.67903 -12.20381 -12.01889 -11.81097 -11.48748 -11.35501 -11.25149 -11.16170 -10.97117 -10.81086 -10.42278 -10.35989 -10.33771 -10.13095 -9.44777 -9.00865 -8.69038 -8.47031 -8.18944 -7.66176 -6.31332 -3.85001 1.39270 1.46866 3.15866 3.25853 3.31313 3.51934 3.92893 4.12082 4.37809 4.65330 4.80377 4.94815 4.96989 5.04530 5.11289 5.16446 5.24980 5.37501 5.44746 5.47586 5.55831 5.62767 5.84457 5.93116 6.00707 6.06590 6.11412 6.18551 6.24528 6.36988 6.42057 6.55934 6.57312 6.64314 6.85646 6.89607 7.09136 7.22562 7.57976 8.15070 8.50663 9.20482 9.45264 10.02548 10.72994 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.026115 B = 0.004932 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.925667 B = 5675.529294 C = 6047.306470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.440 5.440 3 C -0.306 4.306 4 H 0.099 0.901 5 C 0.030 3.970 6 N -0.880 5.880 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.471 3.529 12 O -0.591 6.591 13 C -0.146 4.146 14 H 0.117 0.883 15 C -0.104 4.104 16 H 0.114 0.886 17 C -0.039 4.039 18 C -0.111 4.111 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.117 4.117 22 C -0.081 4.081 23 C -0.091 4.091 24 C -0.086 4.086 25 C -0.116 4.116 26 H 0.122 0.878 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.029 0.971 30 H 0.267 0.733 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 -14.139 -4.082 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.157 5.157 3 C -0.434 4.434 4 H 0.117 0.883 5 C -0.173 4.173 6 N -0.519 5.519 7 Si 0.752 3.248 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.193 1.193 11 C 0.259 3.741 12 O -0.476 6.476 13 C -0.167 4.167 14 H 0.134 0.866 15 C -0.123 4.123 16 H 0.132 0.868 17 C -0.039 4.039 18 C -0.129 4.129 19 C -0.142 4.142 20 C -0.147 4.147 21 C -0.135 4.135 22 C -0.081 4.081 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.135 4.135 26 H 0.140 0.860 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.795 -13.952 -3.983 15.624 hybrid contribution -0.064 1.025 -0.179 1.042 sum -5.860 -12.927 -4.162 14.791 Atomic orbital electron populations 1.21466 0.81145 0.99131 1.01287 1.43511 1.05520 1.04595 1.62103 1.19687 0.99258 0.83583 1.40897 0.88301 1.25330 0.96621 1.00052 0.95297 1.70026 1.18772 1.29245 1.33885 0.85933 0.79629 0.81241 0.77962 1.20368 1.20951 1.19339 1.19126 0.87320 0.83749 0.83890 1.90497 1.13836 1.86919 1.56369 1.22537 1.01518 0.91758 1.00892 0.86561 1.21292 0.97023 1.01404 0.92622 0.86797 1.19152 0.95238 0.96366 0.93106 1.20942 0.96809 0.99316 0.95847 1.21074 0.96069 0.97830 0.99216 1.21057 1.00085 1.00263 0.93272 1.20930 0.96329 0.99774 0.96473 1.19802 0.95390 0.97223 0.95661 1.20891 0.96076 1.02938 0.92881 1.21259 0.93915 0.96725 1.00446 1.22656 0.99225 0.93667 0.97916 0.86018 0.92711 0.91310 0.95280 0.92255 0.86022 0.86326 0.86445 0.86270 0.89708 0.90859 0.90605 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.64 8.29 59.85 0.50 3.13 16 2 N -0.44 -11.60 3.02 -122.20 -0.37 -11.97 16 3 C -0.31 -8.71 9.29 -14.93 -0.14 -8.85 16 4 H 0.10 2.94 7.41 -52.49 -0.39 2.55 16 5 C 0.03 0.81 5.03 -17.47 -0.09 0.72 16 6 N -0.88 -23.82 10.77 55.50 0.60 -23.22 16 7 Si 0.93 20.98 29.58 -169.99 -5.03 15.95 16 8 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 C 0.47 11.82 7.41 -10.98 -0.08 11.73 16 12 O -0.59 -16.69 15.96 5.55 0.09 -16.60 16 13 C -0.15 -2.82 3.82 -91.77 -0.35 -3.17 16 14 H 0.12 2.13 4.89 -51.93 -0.25 1.88 16 15 C -0.10 -1.77 5.88 -91.27 -0.54 -2.30 16 16 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 17 C -0.04 -0.57 5.58 -104.50 -0.58 -1.16 16 18 C -0.11 -1.50 9.76 -39.62 -0.39 -1.89 16 19 C -0.12 -1.45 10.05 -39.56 -0.40 -1.85 16 20 C -0.13 -1.44 10.05 -39.56 -0.40 -1.84 16 21 C -0.12 -1.38 9.69 -39.62 -0.38 -1.77 16 22 C -0.08 -1.09 5.46 -104.51 -0.57 -1.66 16 23 C -0.09 -1.13 5.47 -27.50 -0.15 -1.28 16 24 C -0.09 -1.12 6.14 -26.13 -0.16 -1.28 16 25 C -0.12 -1.93 6.05 -89.97 -0.54 -2.47 16 26 H 0.12 2.19 7.70 -51.93 -0.40 1.79 16 27 H 0.05 1.30 7.63 -51.93 -0.40 0.91 16 28 H 0.07 1.67 6.99 -51.93 -0.36 1.30 16 29 H 0.03 0.58 6.60 -51.93 -0.34 0.24 16 30 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.12 1.14 8.03 -52.49 -0.42 0.72 16 35 H 0.08 1.14 5.98 -51.93 -0.31 0.83 16 36 H 0.07 0.74 8.00 -51.93 -0.42 0.32 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 308.75 15.07 4.65 4.65 Total: -1.00 -31.35 308.75 -9.30 -40.65 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.96 Total: 4.48 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -4.27 Total: -13.93 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.23 Total: -35.19 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.09 Total: -16.60 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.35 -9.30 -40.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227417808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.651 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds