Wall clock time and date at job start Mon Mar 30 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37105 * 120.00244 * 2 1 4 4 H 1.08000 * 120.00482 * 201.70328 * 3 2 1 5 5 C 1.38945 * 119.99500 * 21.70615 * 3 2 1 6 6 N 1.31419 * 120.00468 * 14.86057 * 5 3 2 7 7 Si 1.86807 * 119.99989 * 194.85797 * 5 3 2 8 8 H 1.48500 * 109.46853 * 89.99707 * 7 5 3 9 9 H 1.48498 * 109.47295 * 210.00119 * 7 5 3 10 10 H 1.48495 * 109.46695 * 330.00136 * 7 5 3 11 11 C 1.34780 * 120.00256 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00043 * 180.02562 * 11 2 1 13 13 C 1.50702 * 119.99791 * 0.27368 * 11 2 1 14 14 H 1.09002 * 115.52816 * 325.58986 * 13 11 2 15 15 C 1.53045 * 117.46932 * 111.11445 * 13 11 2 16 16 H 1.08996 * 117.75721 * 358.91220 * 15 13 11 17 17 C 1.50924 * 117.23075 * 213.58775 * 15 13 11 18 18 C 1.38083 * 120.40659 * 134.94794 * 17 15 13 19 19 C 1.38279 * 119.90183 * 179.97438 * 18 17 15 20 20 C 1.38258 * 120.03941 * 0.04727 * 19 18 17 21 21 C 1.38271 * 120.05089 * 359.95712 * 20 19 18 22 22 C 1.38095 * 119.91285 * 0.04101 * 21 20 19 23 23 C 1.50883 * 120.39628 * 179.97438 * 22 21 20 24 24 C 1.53563 * 108.60261 * 135.94258 * 23 22 21 25 25 C 1.52946 * 117.46747 * 180.08344 * 13 11 2 26 26 H 1.09001 * 118.00062 * 0.30012 * 25 13 11 27 27 H 1.08996 * 109.46842 * 270.55396 * 1 2 3 28 28 H 1.08994 * 109.46784 * 30.54970 * 1 2 3 29 29 H 1.08999 * 109.46885 * 150.55205 * 1 2 3 30 30 H 0.97002 * 120.00325 * 179.97438 * 6 5 3 31 31 H 1.07994 * 120.04779 * 359.97438 * 18 17 15 32 32 H 1.07999 * 119.97828 * 180.02562 * 19 18 17 33 33 H 1.07997 * 119.96856 * 179.97438 * 20 19 18 34 34 H 1.07998 * 120.04142 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.61315 * 255.67211 * 23 22 21 36 36 H 1.08996 * 109.61703 * 16.20510 * 23 22 21 37 37 H 1.09004 * 109.71435 * 183.00201 * 24 23 22 38 38 H 1.09001 * 109.71376 * 303.60718 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1732 1.2205 -0.3459 5 6 1.5297 2.3479 0.4451 6 7 0.4107 2.2734 1.1301 7 14 2.2856 4.0145 0.0697 8 1 1.7526 4.5204 -1.2207 9 1 1.9437 4.9689 1.1548 10 1 3.7614 3.8788 -0.0234 11 6 2.1390 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3855 -2.4723 -0.0073 14 1 0.4455 -2.4750 0.5446 15 6 1.4614 -3.3247 -1.2762 16 1 2.0401 -2.9368 -2.1144 17 6 0.2382 -4.1297 -1.6415 18 6 -0.2219 -4.1502 -2.9433 19 6 -1.3433 -4.8918 -3.2665 20 6 -2.0034 -5.6109 -2.2874 21 6 -1.5427 -5.5902 -0.9839 22 6 -0.4227 -4.8496 -0.6610 23 6 0.0892 -4.8188 0.7580 24 6 1.6168 -4.9729 0.7312 25 6 2.2080 -3.7618 -0.0056 26 1 3.2945 -3.6757 0.0055 27 1 -0.3633 0.0099 1.0276 28 1 -0.3633 0.8850 -0.5223 29 1 -0.3633 -0.8949 -0.5052 30 1 -0.0226 3.0836 1.4411 31 1 0.2934 -3.5879 -3.7079 32 1 -1.7039 -4.9091 -4.2844 33 1 -2.8794 -6.1894 -2.5410 34 1 -2.0582 -6.1522 -0.2192 35 1 -0.1746 -3.8681 1.2215 36 1 -0.3515 -5.6395 1.3239 37 1 2.0009 -5.0065 1.7507 38 1 1.8846 -5.8902 0.2068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227417808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:49 Heat of formation + Delta-G solvation = 1.327104 kcal Electronic energy + Delta-G solvation = -20589.979754 eV Core-core repulsion = 17590.186490 eV Total energy + Delta-G solvation = -2999.793264 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.81133 -40.06673 -37.97286 -36.61805 -33.93526 -33.58553 -31.56954 -30.48938 -28.48846 -27.06094 -25.66439 -24.38423 -23.01231 -22.75621 -20.55432 -19.44309 -18.97712 -18.27983 -17.29177 -16.90497 -16.43535 -16.01043 -15.74498 -15.63989 -15.15309 -14.82759 -14.68688 -14.07506 -13.87756 -13.68711 -13.46221 -13.30719 -13.16413 -13.06949 -12.67448 -12.60821 -12.44024 -12.33319 -12.15469 -11.94489 -11.49797 -11.47114 -11.06423 -10.72921 -10.42516 -9.75513 -9.61108 -9.32228 -8.38381 -6.01924 0.40068 0.53558 1.34322 1.38569 1.51421 1.84581 2.24427 2.66823 2.89671 3.02681 3.23986 3.62058 3.76574 3.83269 3.87149 4.07581 4.12344 4.14025 4.29964 4.33161 4.40252 4.56066 4.59228 4.68338 4.80952 4.90888 4.95434 4.99260 5.06536 5.16794 5.20014 5.24824 5.27814 5.34237 5.40844 5.65348 5.66769 5.83436 6.04598 6.17341 6.43750 7.11713 7.41724 7.99314 8.64755 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.026115 B = 0.004932 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.925667 B = 5675.529294 C = 6047.306470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.456 5.456 3 C -0.349 4.349 4 H 0.071 0.929 5 C -0.001 4.001 6 N -0.894 5.894 7 Si 0.992 3.008 8 H -0.264 1.264 9 H -0.270 1.270 10 H -0.276 1.276 11 C 0.460 3.540 12 O -0.635 6.635 13 C -0.160 4.160 14 H 0.129 0.871 15 C -0.090 4.090 16 H 0.095 0.905 17 C -0.064 4.064 18 C -0.126 4.126 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.089 4.089 23 C -0.089 4.089 24 C -0.079 4.079 25 C -0.108 4.108 26 H 0.100 0.900 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.275 0.725 31 H 0.120 0.880 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.538 -15.760 -4.214 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.174 5.174 3 C -0.477 4.477 4 H 0.089 0.911 5 C -0.203 4.203 6 N -0.533 5.533 7 Si 0.815 3.185 8 H -0.189 1.189 9 H -0.195 1.195 10 H -0.201 1.201 11 C 0.251 3.749 12 O -0.524 6.524 13 C -0.181 4.181 14 H 0.147 0.853 15 C -0.109 4.109 16 H 0.113 0.887 17 C -0.064 4.064 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.141 4.141 21 C -0.135 4.135 22 C -0.089 4.089 23 C -0.126 4.126 24 C -0.116 4.116 25 C -0.127 4.127 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.160 0.840 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.137 -15.583 -4.114 18.054 hybrid contribution 0.631 1.475 -0.172 1.614 sum -7.506 -14.108 -4.286 16.545 Atomic orbital electron populations 1.21347 0.79478 0.99806 1.00825 1.43773 1.06670 1.04610 1.62318 1.19647 0.99004 0.85567 1.43477 0.91094 1.26120 0.96979 1.02951 0.94280 1.70086 1.19251 1.30582 1.33346 0.84966 0.78298 0.76710 0.78551 1.18932 1.19523 1.20051 1.20094 0.87255 0.85374 0.82221 1.90443 1.15979 1.87935 1.58013 1.22300 1.02025 0.89684 1.04060 0.85342 1.21222 0.98050 1.00252 0.91352 0.88658 1.19078 0.95129 0.97786 0.94388 1.21104 0.97802 1.00068 0.95473 1.21385 0.95188 0.97069 1.00782 1.21492 1.00455 0.99345 0.92802 1.21283 0.95524 0.99148 0.97569 1.19973 0.95999 0.97320 0.95649 1.20913 0.95377 1.03525 0.92777 1.21303 0.94496 0.95111 1.00694 1.22784 0.98100 0.93626 0.98202 0.88193 0.93555 0.92730 0.92349 0.91517 0.86174 0.83987 0.83337 0.83478 0.91005 0.87645 0.89329 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.09 8.29 127.77 1.06 7.15 16 2 N -0.46 -25.12 3.02 -658.90 -1.99 -27.11 16 3 C -0.35 -20.77 9.29 84.04 0.78 -19.99 16 4 H 0.07 4.51 7.41 -2.91 -0.02 4.48 16 5 C 0.00 -0.07 5.03 84.92 0.43 0.36 16 6 N -0.89 -48.70 10.77 21.66 0.23 -48.46 16 7 Si 0.99 43.44 29.58 68.60 2.03 45.47 16 8 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 9 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 C 0.46 24.30 7.41 87.66 0.65 24.95 16 12 O -0.64 -38.22 15.96 -3.06 -0.05 -38.27 16 13 C -0.16 -6.34 3.82 -11.54 -0.04 -6.38 16 14 H 0.13 4.74 4.89 -2.39 -0.01 4.73 16 15 C -0.09 -3.10 5.88 -11.21 -0.07 -3.17 16 16 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 17 C -0.06 -1.83 5.58 -19.78 -0.11 -1.95 16 18 C -0.13 -3.27 9.76 22.24 0.22 -3.06 16 19 C -0.13 -2.59 10.05 22.28 0.22 -2.37 16 20 C -0.12 -2.23 10.05 22.28 0.22 -2.01 16 21 C -0.12 -2.29 9.69 22.24 0.22 -2.07 16 22 C -0.09 -2.18 5.46 -19.79 -0.11 -2.29 16 23 C -0.09 -1.98 5.47 30.10 0.16 -1.81 16 24 C -0.08 -1.91 6.14 30.98 0.19 -1.72 16 25 C -0.11 -3.66 6.05 -10.37 -0.06 -3.73 16 26 H 0.10 3.79 7.70 -2.39 -0.02 3.77 16 27 H 0.05 2.24 7.63 -2.39 -0.02 2.22 16 28 H 0.05 2.69 6.99 -2.39 -0.02 2.68 16 29 H 0.06 2.36 6.60 -2.39 -0.02 2.35 16 30 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 31 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 32 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.15 2.02 8.03 -2.91 -0.02 2.00 16 35 H 0.07 1.80 5.98 -2.39 -0.01 1.78 16 36 H 0.11 1.67 8.00 -2.39 -0.02 1.65 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -70.92 308.75 5.05 -65.87 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 1.06 Total: 20.57 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 3.76 Total: -18.07 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -1.75 Total: -75.57 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.05 Total: -38.27 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -70.92 5.05 -65.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227417808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.196 kcal (2) G-P(sol) polarization free energy of solvation -70.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds