Wall clock time and date at job start Mon Mar 30 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38567 * 119.82926 * 2 1 4 4 C 1.38018 * 120.42282 * 179.97438 * 3 2 1 5 5 C 1.38880 * 120.07059 * 0.02562 * 4 3 2 6 6 N 1.39035 * 120.17059 * 179.97438 * 5 4 3 7 7 C 1.46897 * 110.99511 * 246.74954 * 6 5 4 8 8 C 1.53236 * 109.33832 * 187.25530 * 7 6 5 9 9 N 1.47082 * 108.52163 * 306.16605 * 8 7 6 10 10 C 1.36939 * 120.88154 * 230.91743 * 9 8 7 11 11 H 1.07995 * 120.00028 * 25.78045 * 10 9 8 12 12 C 1.38813 * 119.99629 * 205.78720 * 10 9 8 13 13 N 1.31618 * 120.00466 * 15.25619 * 12 10 9 14 14 Si 1.86799 * 119.99839 * 195.26218 * 12 10 9 15 15 H 1.48504 * 109.47146 * 59.99453 * 14 12 10 16 16 H 1.48497 * 109.47362 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47023 * 299.99692 * 14 12 10 18 18 C 1.47076 * 118.23698 * 51.18461 * 9 8 7 19 19 C 1.46903 * 111.00013 * 11.04570 * 6 5 4 20 20 C 1.40364 * 119.65561 * 0.23058 * 5 4 3 21 21 C 1.43196 * 120.20526 * 179.75075 * 20 5 4 22 22 N 4.80150 * 134.59562 * 180.24202 * 2 1 3 23 23 C 1.37794 * 119.82637 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46576 * 90.00170 * 1 2 3 25 25 H 1.08996 * 109.47175 * 210.00384 * 1 2 3 26 26 H 1.08998 * 109.47177 * 330.00569 * 1 2 3 27 27 H 1.08003 * 119.78896 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.96163 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.50073 * 67.28878 * 7 6 5 30 30 H 1.09009 * 109.51567 * 307.22208 * 7 6 5 31 31 H 1.09006 * 109.63053 * 186.45712 * 8 7 6 32 32 H 1.09004 * 109.63385 * 65.87522 * 8 7 6 33 33 H 0.96997 * 120.00622 * 180.02562 * 13 12 10 34 34 H 1.08999 * 109.62930 * 68.52605 * 18 9 8 35 35 H 1.09001 * 109.62990 * 189.11090 * 18 9 8 36 36 H 1.09001 * 109.49034 * 292.71113 * 19 6 5 37 37 H 1.08996 * 109.49193 * 52.75963 * 19 6 5 38 38 H 1.07995 * 120.04458 * 0.02761 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2021 0.0000 4 6 3.5764 1.2164 0.0005 5 6 4.2847 0.0218 0.0005 6 7 5.6750 0.0338 0.0005 7 6 6.2060 -0.5031 -1.2595 8 6 7.7281 -0.6419 -1.1506 9 7 8.2876 0.6558 -0.7427 10 6 9.3213 1.2251 -1.4374 11 1 9.4690 0.9839 -2.4797 12 6 10.1793 2.1121 -0.8018 13 7 10.1982 2.1822 0.5124 14 14 11.3070 3.2066 -1.8117 15 1 10.4909 4.0716 -2.7012 16 1 12.1166 4.0565 -0.9022 17 1 12.2094 2.3620 -2.6348 18 6 7.7114 1.3229 0.4346 19 6 6.1898 1.3843 0.2633 20 6 3.5897 -1.1977 -0.0049 21 6 4.3082 -2.4364 -0.0104 22 7 4.8782 -3.4190 -0.0144 23 6 2.1924 -1.1954 0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6501 2.1338 -0.0004 28 1 4.1061 2.1576 0.0001 29 1 5.9601 0.1754 -2.0764 30 1 5.7646 -1.4807 -1.4535 31 1 8.1397 -0.9303 -2.1178 32 1 7.9745 -1.3975 -0.4046 33 1 10.7975 2.8022 0.9565 34 1 7.9561 0.7561 1.3330 35 1 8.1118 2.3334 0.5154 36 1 5.9442 2.0366 -0.5747 37 1 5.7363 1.7756 1.1739 38 1 1.6503 -2.1295 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235864336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:12 Heat of formation + Delta-G solvation = 91.728482 kcal Electronic energy + Delta-G solvation = -20443.882201 eV Core-core repulsion = 17480.301786 eV Total energy + Delta-G solvation = -2963.580415 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34299 -37.76507 -36.27113 -34.80359 -32.20888 -31.58371 -30.69639 -29.98414 -27.36444 -25.39726 -24.14201 -23.30275 -22.37764 -21.21934 -19.22656 -18.21117 -17.15933 -16.25001 -15.85441 -14.88740 -14.64997 -14.34742 -14.19867 -13.94179 -13.81050 -13.49352 -13.33515 -13.21657 -12.99658 -12.72675 -12.71380 -12.15142 -11.79084 -11.67249 -11.53048 -11.15484 -11.14243 -10.77392 -10.62090 -10.43916 -10.19077 -9.88431 -9.80218 -9.32981 -8.98616 -8.53840 -7.66483 -6.77539 -5.83524 -3.26103 0.84098 1.29559 2.92710 3.06309 3.35576 3.41371 3.42136 3.82498 4.06480 4.07763 4.44873 4.77193 4.79306 5.08940 5.13587 5.24867 5.33384 5.40488 5.45393 5.51235 5.66946 5.69763 5.76443 5.92389 5.95974 5.98663 6.06774 6.14687 6.23987 6.37056 6.43637 6.56917 6.72573 6.80699 7.08113 7.42000 7.49444 7.59103 7.72865 7.75379 8.35892 9.14330 9.76440 10.33776 11.25178 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.029370 B = 0.004698 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.138752 B = 5958.597277 C = 6541.097716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.127 4.127 3 C -0.064 4.064 4 C -0.171 4.171 5 C 0.169 3.831 6 N -0.489 5.489 7 C 0.049 3.951 8 C 0.147 3.853 9 N -0.595 5.595 10 C -0.254 4.254 11 H 0.068 0.932 12 C 0.002 3.998 13 N -0.906 5.906 14 Si 0.906 3.094 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.283 1.283 18 C 0.174 3.826 19 C 0.029 3.971 20 C -0.056 4.056 21 C 0.267 3.733 22 N -0.425 5.425 23 C -0.050 4.050 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.126 0.874 28 H 0.138 0.862 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.256 0.744 34 H 0.028 0.972 35 H 0.100 0.900 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.822 -0.643 -0.959 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C -0.084 4.084 4 C -0.192 4.192 5 C 0.066 3.934 6 N -0.202 5.202 7 C -0.077 4.077 8 C 0.020 3.980 9 N -0.318 5.318 10 C -0.383 4.383 11 H 0.086 0.914 12 C -0.196 4.196 13 N -0.550 5.550 14 Si 0.736 3.264 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.209 1.209 18 C 0.048 3.952 19 C -0.098 4.098 20 C -0.062 4.062 21 C -0.047 4.047 22 N -0.101 5.101 23 C -0.071 4.071 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.144 0.856 28 H 0.156 0.844 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.118 0.882 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.508 -2.369 -0.510 17.674 hybrid contribution 0.232 1.419 -0.851 1.671 sum -17.275 -0.950 -1.361 17.355 Atomic orbital electron populations 1.20709 0.90848 1.02684 1.02174 1.19630 0.96141 0.92535 1.04482 1.21086 0.93697 0.97587 0.96010 1.21459 0.94492 0.97885 1.05381 1.19161 0.89675 0.91720 0.92887 1.58777 1.02675 1.25576 1.33213 1.22817 0.99194 0.98432 0.87235 1.20999 0.88897 0.89447 0.98656 1.44153 1.38019 1.17115 1.32505 1.19187 1.04438 1.22200 0.92478 0.91442 1.25027 0.97574 1.01658 0.95388 1.69979 1.39884 1.38489 1.06673 0.86311 0.80365 0.80543 0.79195 1.21026 1.21551 1.20878 1.20994 0.85011 1.00248 0.88929 1.23199 1.01039 0.85846 0.99753 1.15720 0.91824 0.86050 1.12624 1.25376 0.93153 0.92568 0.93624 1.81207 1.07785 1.11887 1.09198 1.20836 0.91170 0.98301 0.96803 0.91418 0.91681 0.91592 0.85608 0.84405 0.93650 0.91632 0.91981 0.95474 0.93434 0.95429 0.88182 0.93833 0.90998 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.00 36.01 0.36 -0.34 16 2 C -0.13 -1.20 5.87 -104.66 -0.61 -1.82 16 3 C -0.06 -0.64 9.68 -39.54 -0.38 -1.03 16 4 C -0.17 -2.14 8.80 -39.42 -0.35 -2.49 16 5 C 0.17 2.52 5.41 -83.56 -0.45 2.07 16 6 N -0.49 -8.75 4.29 -170.57 -0.73 -9.48 16 7 C 0.05 0.91 5.27 -3.70 -0.02 0.90 16 8 C 0.15 3.21 6.69 -3.60 -0.02 3.18 16 9 N -0.59 -14.91 3.04 -172.01 -0.52 -15.44 16 10 C -0.25 -6.89 9.66 -15.06 -0.15 -7.03 16 11 H 0.07 1.79 7.87 -52.49 -0.41 1.38 16 12 C 0.00 0.05 4.99 -17.43 -0.09 -0.04 16 13 N -0.91 -25.84 10.96 55.49 0.61 -25.23 16 14 Si 0.91 21.37 29.58 -169.99 -5.03 16.34 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.17 4.10 5.41 -3.60 -0.02 4.08 16 19 C 0.03 0.54 4.29 -3.70 -0.02 0.53 16 20 C -0.06 -0.78 5.62 -106.62 -0.60 -1.38 16 21 C 0.27 4.28 12.54 -22.47 -0.28 4.00 16 22 N -0.43 -7.60 18.51 41.84 0.77 -6.83 16 23 C -0.05 -0.54 9.39 -39.19 -0.37 -0.91 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 26 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 28 H 0.14 1.67 5.91 -52.48 -0.31 1.36 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.15 5.70 -51.92 -0.30 0.86 16 31 H 0.06 1.30 7.95 -51.93 -0.41 0.89 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 2.57 5.98 -51.93 -0.31 2.26 16 36 H 0.04 0.79 7.33 -51.93 -0.38 0.41 16 37 H 0.07 1.18 7.46 -51.93 -0.39 0.79 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 312.69 15.07 4.71 4.71 Total: -1.00 -30.23 312.69 -8.21 -38.44 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -5.02 Total: -2.23 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -3.00 Total: -0.28 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.13 Total: -56.98 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.23 -8.21 -38.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235864336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.166 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds