Wall clock time and date at job start Mon Mar 30 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38567 * 119.82926 * 2 1 4 4 C 1.38018 * 120.42282 * 179.97438 * 3 2 1 5 5 C 1.38880 * 120.07059 * 0.02562 * 4 3 2 6 6 N 1.39035 * 120.17059 * 179.97438 * 5 4 3 7 7 C 1.46897 * 110.99511 * 246.74954 * 6 5 4 8 8 C 1.53236 * 109.33832 * 187.25530 * 7 6 5 9 9 N 1.47082 * 108.52163 * 306.16605 * 8 7 6 10 10 C 1.36939 * 120.88154 * 230.91743 * 9 8 7 11 11 H 1.07995 * 120.00028 * 25.78045 * 10 9 8 12 12 C 1.38813 * 119.99629 * 205.78720 * 10 9 8 13 13 N 1.31618 * 120.00466 * 15.25619 * 12 10 9 14 14 Si 1.86799 * 119.99839 * 195.26218 * 12 10 9 15 15 H 1.48504 * 109.47146 * 59.99453 * 14 12 10 16 16 H 1.48497 * 109.47362 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47023 * 299.99692 * 14 12 10 18 18 C 1.47076 * 118.23698 * 51.18461 * 9 8 7 19 19 C 1.46903 * 111.00013 * 11.04570 * 6 5 4 20 20 C 1.40364 * 119.65561 * 0.23058 * 5 4 3 21 21 C 1.43196 * 120.20526 * 179.75075 * 20 5 4 22 22 N 4.80150 * 134.59562 * 180.24202 * 2 1 3 23 23 C 1.37794 * 119.82637 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46576 * 90.00170 * 1 2 3 25 25 H 1.08996 * 109.47175 * 210.00384 * 1 2 3 26 26 H 1.08998 * 109.47177 * 330.00569 * 1 2 3 27 27 H 1.08003 * 119.78896 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.96163 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.50073 * 67.28878 * 7 6 5 30 30 H 1.09009 * 109.51567 * 307.22208 * 7 6 5 31 31 H 1.09006 * 109.63053 * 186.45712 * 8 7 6 32 32 H 1.09004 * 109.63385 * 65.87522 * 8 7 6 33 33 H 0.96997 * 120.00622 * 180.02562 * 13 12 10 34 34 H 1.08999 * 109.62930 * 68.52605 * 18 9 8 35 35 H 1.09001 * 109.62990 * 189.11090 * 18 9 8 36 36 H 1.09001 * 109.49034 * 292.71113 * 19 6 5 37 37 H 1.08996 * 109.49193 * 52.75963 * 19 6 5 38 38 H 1.07995 * 120.04458 * 0.02761 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2021 0.0000 4 6 3.5764 1.2164 0.0005 5 6 4.2847 0.0218 0.0005 6 7 5.6750 0.0338 0.0005 7 6 6.2060 -0.5031 -1.2595 8 6 7.7281 -0.6419 -1.1506 9 7 8.2876 0.6558 -0.7427 10 6 9.3213 1.2251 -1.4374 11 1 9.4690 0.9839 -2.4797 12 6 10.1793 2.1121 -0.8018 13 7 10.1982 2.1822 0.5124 14 14 11.3070 3.2066 -1.8117 15 1 10.4909 4.0716 -2.7012 16 1 12.1166 4.0565 -0.9022 17 1 12.2094 2.3620 -2.6348 18 6 7.7114 1.3229 0.4346 19 6 6.1898 1.3843 0.2633 20 6 3.5897 -1.1977 -0.0049 21 6 4.3082 -2.4364 -0.0104 22 7 4.8782 -3.4190 -0.0144 23 6 2.1924 -1.1954 0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6501 2.1338 -0.0004 28 1 4.1061 2.1576 0.0001 29 1 5.9601 0.1754 -2.0764 30 1 5.7646 -1.4807 -1.4535 31 1 8.1397 -0.9303 -2.1178 32 1 7.9745 -1.3975 -0.4046 33 1 10.7975 2.8022 0.9565 34 1 7.9561 0.7561 1.3330 35 1 8.1118 2.3334 0.5154 36 1 5.9442 2.0366 -0.5747 37 1 5.7363 1.7756 1.1739 38 1 1.6503 -2.1295 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235864336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:12 Heat of formation + Delta-G solvation = 74.107605 kcal Electronic energy + Delta-G solvation = -20444.646300 eV Core-core repulsion = 17480.301786 eV Total energy + Delta-G solvation = -2964.344514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48944 -39.09787 -37.51710 -36.43098 -33.77029 -32.73269 -32.00255 -31.54335 -28.82252 -26.63056 -25.37630 -24.90896 -23.80977 -22.44075 -20.85720 -19.34711 -18.79604 -17.62381 -17.00392 -16.73694 -15.96231 -15.63310 -15.47961 -15.36117 -15.16659 -14.91273 -14.74447 -14.37535 -14.14413 -14.09460 -13.86901 -13.35782 -13.03376 -12.94659 -12.65527 -12.61792 -12.56821 -12.31596 -12.22777 -12.13404 -11.92113 -11.69434 -11.60219 -10.69647 -10.38072 -9.91622 -8.87641 -8.72638 -7.90878 -5.37637 -0.13990 0.38219 1.47583 1.49158 1.56669 1.69889 1.99491 2.48099 2.62170 2.94027 2.98661 3.25084 3.53809 3.88954 4.00485 4.06408 4.13489 4.22700 4.38173 4.40029 4.46423 4.52463 4.55903 4.70403 4.80800 4.83210 4.98846 5.03500 5.05614 5.17658 5.25644 5.33820 5.39402 5.56462 5.62972 5.64797 5.85278 5.95265 6.28101 6.31734 6.53856 7.08161 7.75557 8.30175 9.15883 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.029370 B = 0.004698 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.138752 B = 5958.597277 C = 6541.097716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.112 4.112 3 C -0.054 4.054 4 C -0.174 4.174 5 C 0.141 3.859 6 N -0.506 5.506 7 C 0.066 3.934 8 C 0.145 3.855 9 N -0.611 5.611 10 C -0.269 4.269 11 H 0.070 0.930 12 C -0.048 4.048 13 N -0.936 5.936 14 Si 0.974 3.026 15 H -0.274 1.274 16 H -0.292 1.292 17 H -0.279 1.279 18 C 0.181 3.819 19 C 0.050 3.950 20 C -0.071 4.071 21 C 0.282 3.718 22 N -0.471 5.471 23 C -0.045 4.045 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.160 0.840 28 H 0.140 0.860 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.004 0.996 33 H 0.252 0.748 34 H -0.007 1.007 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.078 0.495 -1.774 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.113 4.113 3 C -0.073 4.073 4 C -0.195 4.195 5 C 0.040 3.960 6 N -0.221 5.221 7 C -0.061 4.061 8 C 0.019 3.981 9 N -0.335 5.335 10 C -0.399 4.399 11 H 0.088 0.912 12 C -0.243 4.243 13 N -0.582 5.582 14 Si 0.801 3.199 15 H -0.200 1.200 16 H -0.218 1.218 17 H -0.205 1.205 18 C 0.055 3.945 19 C -0.078 4.078 20 C -0.077 4.077 21 C -0.032 4.032 22 N -0.147 5.147 23 C -0.066 4.066 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.177 0.823 28 H 0.158 0.842 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.022 0.978 33 H 0.061 0.939 34 H 0.011 0.989 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -20.812 -1.248 -1.333 20.892 hybrid contribution 1.093 1.036 -0.580 1.614 sum -19.719 -0.212 -1.912 19.813 Atomic orbital electron populations 1.20809 0.88127 1.04090 1.03401 1.20062 0.97947 0.91675 1.01606 1.21474 0.92652 0.99310 0.93833 1.21549 0.95710 0.96871 1.05362 1.19175 0.87967 0.93160 0.95743 1.58688 1.05116 1.25024 1.33229 1.22511 0.96332 0.99029 0.88202 1.21051 0.91525 0.87639 0.97864 1.44414 1.38104 1.18323 1.32654 1.19537 1.05056 1.22436 0.92872 0.91243 1.25810 0.99194 1.02966 0.96345 1.70158 1.40729 1.39121 1.08223 0.85251 0.78385 0.78591 0.77638 1.19956 1.21833 1.20459 1.20766 0.88598 0.97870 0.87256 1.22838 0.97088 0.86799 1.01066 1.15902 0.93025 0.84590 1.14142 1.25841 0.92350 0.92636 0.92360 1.81210 1.09027 1.13414 1.11091 1.21140 0.89734 1.00102 0.95620 0.90121 0.90607 0.90029 0.82290 0.84193 0.93298 0.90896 0.91661 0.97834 0.93852 0.98924 0.90718 0.93190 0.88813 0.83078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.00 71.24 0.71 -0.12 16 2 C -0.11 -1.61 5.87 -19.89 -0.12 -1.73 16 3 C -0.05 -0.83 9.68 22.30 0.22 -0.62 16 4 C -0.17 -3.87 8.80 22.37 0.20 -3.68 16 5 C 0.14 4.01 5.41 38.67 0.21 4.22 16 6 N -0.51 -18.11 4.29 -693.55 -2.97 -21.08 16 7 C 0.07 2.46 5.27 86.38 0.46 2.91 16 8 C 0.15 6.59 6.69 86.35 0.58 7.17 16 9 N -0.61 -31.74 3.04 -698.12 -2.13 -33.86 16 10 C -0.27 -14.97 9.66 84.03 0.81 -14.16 16 11 H 0.07 3.74 7.87 -2.91 -0.02 3.72 16 12 C -0.05 -2.66 4.99 84.86 0.42 -2.24 16 13 N -0.94 -55.23 10.96 21.65 0.24 -55.00 16 14 Si 0.97 44.49 29.58 68.60 2.03 46.52 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 C 0.18 8.87 5.41 86.35 0.47 9.34 16 19 C 0.05 1.84 4.29 86.38 0.37 2.21 16 20 C -0.07 -1.85 5.62 -21.16 -0.12 -1.97 16 21 C 0.28 8.96 12.54 88.33 1.11 10.06 16 22 N -0.47 -17.12 18.51 19.00 0.35 -16.77 16 23 C -0.05 -0.82 9.39 22.53 0.21 -0.61 16 24 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.07 0.48 8.08 -2.39 -0.02 0.46 16 26 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 27 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 28 H 0.14 3.03 5.91 -2.91 -0.02 3.01 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 2.60 5.70 -2.38 -0.01 2.58 16 31 H 0.06 2.83 7.95 -2.38 -0.02 2.81 16 32 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 33 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 34 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.07 4.02 5.98 -2.39 -0.01 4.00 16 36 H 0.05 1.78 7.33 -2.39 -0.02 1.76 16 37 H 0.09 3.02 7.46 -2.39 -0.02 3.00 16 38 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -68.36 312.69 4.11 -64.25 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.06 Total: 5.14 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 5.52 Total: 10.80 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -4.51 Total: -126.71 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.36 4.11 -64.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235864336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.354 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds