Wall clock time and date at job start Mon Mar 30 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 120.00200 * 2 1 4 4 S 1.71196 * 120.00009 * 180.02562 * 3 2 1 5 5 N 1.34782 * 120.00228 * 0.02562 * 3 2 1 6 6 C 1.46493 * 120.00139 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47084 * 179.97438 * 6 5 3 8 8 H 1.08003 * 119.99947 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00347 * 180.02562 * 7 6 5 10 10 N 1.31524 * 119.99603 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00387 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47056 * 89.99706 * 11 9 7 13 13 H 1.48501 * 109.47247 * 210.00033 * 11 9 7 14 14 H 1.48505 * 109.47155 * 329.99913 * 11 9 7 15 15 C 1.46505 * 119.99779 * 180.02562 * 2 1 3 16 16 C 1.53126 * 109.52134 * 59.99782 * 15 2 1 17 17 C 1.53034 * 109.27454 * 182.43949 * 16 15 2 18 18 N 1.46847 * 109.52486 * 59.18079 * 17 16 15 19 19 C 1.46906 * 110.99812 * 174.15668 * 18 17 16 20 20 C 1.46848 * 111.19788 * 298.25416 * 18 17 16 21 21 C 1.53035 * 109.52142 * 61.74047 * 20 18 17 22 22 H 1.09002 * 109.46794 * 269.99482 * 1 2 3 23 23 H 1.09002 * 109.46923 * 29.99663 * 1 2 3 24 24 H 1.08995 * 109.47057 * 150.00119 * 1 2 3 25 25 H 0.97001 * 119.99267 * 359.97438 * 5 3 2 26 26 H 1.08994 * 109.47316 * 299.99999 * 6 5 3 27 27 H 1.09000 * 109.47030 * 60.00167 * 6 5 3 28 28 H 0.97003 * 119.99602 * 179.97438 * 10 9 7 29 29 H 1.09001 * 109.57417 * 180.15708 * 15 2 1 30 30 H 1.08997 * 109.50129 * 302.38251 * 16 15 2 31 31 H 1.09006 * 109.50177 * 62.50009 * 16 15 2 32 32 H 1.08999 * 109.45899 * 179.20018 * 17 16 15 33 33 H 1.09006 * 109.46754 * 299.15875 * 17 16 15 34 34 H 1.09000 * 109.46775 * 184.20456 * 19 18 17 35 35 H 1.08995 * 109.47474 * 304.20815 * 19 18 17 36 36 H 1.09001 * 109.47046 * 64.21374 * 19 18 17 37 37 H 1.09000 * 109.46321 * 301.72950 * 20 18 17 38 38 H 1.08999 * 109.45108 * 181.74821 * 20 18 17 39 39 H 1.08994 * 109.50219 * 180.87675 * 21 20 18 40 40 H 1.09010 * 109.53489 * 60.77934 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 16 3.8509 1.1671 -0.0007 5 7 1.4651 2.3344 0.0005 6 6 2.1976 3.6031 0.0011 7 6 1.2184 4.7485 0.0010 8 1 0.1566 4.5512 0.0001 9 6 1.6780 6.0484 0.0009 10 7 2.9711 6.2887 0.0015 11 14 0.4642 7.4683 0.0015 12 1 0.1430 7.8444 1.4018 13 1 1.0639 8.6325 -0.6987 14 1 -0.7794 7.0567 -0.6982 15 6 2.1975 -1.2688 -0.0006 16 6 1.8283 -2.0722 -1.2508 17 6 2.5494 -3.4215 -1.2153 18 7 2.1568 -4.1562 -0.0059 19 6 2.7216 -5.5123 -0.0071 20 6 2.5437 -3.4260 1.2080 21 6 1.8225 -2.0767 1.2448 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 0.4951 2.3344 0.0005 26 1 2.8243 3.6604 0.8910 27 1 2.8243 3.6612 -0.8889 28 1 3.2944 7.2033 0.0010 29 1 3.2695 -1.0716 0.0023 30 1 0.7509 -2.2357 -1.2732 31 1 2.1319 -1.5206 -2.1406 32 1 2.2776 -4.0018 -2.0971 33 1 3.6270 -3.2575 -1.2069 34 1 2.3551 -6.0592 0.8616 35 1 2.4196 -6.0309 -0.9170 36 1 3.8092 -5.4529 0.0333 37 1 3.6213 -3.2618 1.2051 38 1 2.2674 -4.0096 2.0861 39 1 2.1219 -1.5285 2.1380 40 1 0.7448 -2.2398 1.2620 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243730676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:53 Heat of formation + Delta-G solvation = 19.579942 kcal Electronic energy + Delta-G solvation = -19098.072854 eV Core-core repulsion = 16266.807795 eV Total energy + Delta-G solvation = -2831.265059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.89022 -38.08873 -35.43961 -32.97354 -31.83210 -31.03093 -28.32816 -27.53239 -26.05178 -23.34828 -23.32326 -22.28521 -21.29131 -19.68550 -18.08814 -17.01972 -16.07078 -15.65505 -15.43274 -14.97558 -14.87200 -14.73416 -14.25748 -13.70151 -13.60547 -13.15097 -13.14372 -12.69839 -12.60588 -12.38748 -12.06785 -11.87853 -11.42528 -11.35003 -11.19565 -11.02630 -10.91247 -10.65744 -10.40260 -10.35869 -10.31729 -9.53458 -8.77643 -8.55497 -8.09871 -7.11142 -6.63563 -6.22214 -4.32688 2.13314 2.55435 3.16753 3.19732 3.26269 3.28190 3.72526 4.04698 4.31812 4.63146 4.69931 4.90582 4.93875 4.95859 5.12760 5.13666 5.25644 5.27604 5.33385 5.36405 5.46419 5.53227 5.61838 5.66950 5.69997 5.81240 5.91783 6.06702 6.18866 6.56872 6.76419 6.83868 6.85946 7.25358 7.41461 7.42754 7.70336 7.86007 8.23131 8.72004 9.32767 10.86277 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.043664 B = 0.003801 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.108896 B = 7364.237729 C = 7658.064225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.585 5.585 3 C 0.559 3.441 4 S -0.680 6.680 5 N -0.651 5.651 6 C 0.251 3.749 7 C -0.556 4.556 8 H 0.061 0.939 9 C 0.069 3.931 10 N -0.875 5.875 11 Si 0.905 3.095 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.132 3.868 16 C -0.122 4.122 17 C 0.060 3.940 18 N -0.546 5.546 19 C 0.025 3.975 20 C 0.060 3.940 21 C -0.121 4.121 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.389 0.611 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.268 0.732 29 H 0.135 0.865 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.026 0.974 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 -20.182 -0.083 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.298 5.298 3 C 0.197 3.803 4 S -0.552 6.552 5 N -0.275 5.275 6 C 0.131 3.869 7 C -0.595 4.595 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.511 5.511 11 Si 0.732 3.268 12 H -0.204 1.204 13 H -0.208 1.208 14 H -0.198 1.198 15 C 0.027 3.973 16 C -0.161 4.161 17 C -0.069 4.069 18 N -0.271 5.271 19 C -0.123 4.123 20 C -0.069 4.069 21 C -0.160 4.160 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.226 0.774 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.153 0.847 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.637 -19.908 -0.088 20.691 hybrid contribution -1.209 0.940 0.011 1.532 sum -6.846 -18.969 -0.077 20.167 Atomic orbital electron populations 1.21928 0.80218 1.03593 1.02417 1.46804 1.05661 1.04467 1.72836 1.22252 0.95162 0.81670 0.81223 1.93105 0.90739 1.94304 1.77081 1.46094 1.09977 1.06055 1.65370 1.19632 0.92228 0.74927 1.00145 1.21139 0.92680 0.90757 1.54887 0.92130 1.24902 0.95471 0.98785 0.94440 1.69993 1.12441 1.21064 1.47622 0.86402 0.80705 0.81438 0.78295 1.20363 1.20812 1.19812 1.21654 1.01143 0.80162 0.94337 1.21911 1.01124 0.94807 0.98292 1.22031 0.98028 0.94133 0.92660 1.61984 1.59890 1.02737 1.02449 1.22338 0.97339 0.90021 1.02628 1.22033 0.98048 0.94193 0.92581 1.21889 1.01136 0.94708 0.98278 0.91928 0.91123 0.89858 0.77404 0.93254 0.93283 0.92208 0.84739 0.91192 0.90766 0.90493 0.94123 0.91424 0.91442 0.95537 0.94125 0.90496 0.90818 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 9.21 59.85 0.55 1.25 16 2 N -0.58 -8.61 2.77 -175.81 -0.49 -9.10 16 3 C 0.56 11.00 7.70 -86.92 -0.67 10.33 16 4 S -0.68 -16.19 26.91 -107.50 -2.89 -19.08 16 5 N -0.65 -13.36 5.41 -63.22 -0.34 -13.70 16 6 C 0.25 6.46 4.88 -5.20 -0.03 6.43 16 7 C -0.56 -14.72 9.28 -34.44 -0.32 -15.04 16 8 H 0.06 1.50 7.60 -52.48 -0.40 1.10 16 9 C 0.07 1.88 5.46 -17.82 -0.10 1.79 16 10 N -0.88 -25.44 13.29 55.43 0.74 -24.70 16 11 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 C 0.13 1.75 2.49 -67.80 -0.17 1.58 16 16 C -0.12 -1.36 5.40 -26.65 -0.14 -1.51 16 17 C 0.06 0.59 5.46 -3.84 -0.02 0.57 16 18 N -0.55 -5.26 4.91 -242.96 -1.19 -6.45 16 19 C 0.03 0.19 9.59 60.07 0.58 0.77 16 20 C 0.06 0.60 5.46 -3.83 -0.02 0.57 16 21 C -0.12 -1.36 5.41 -26.65 -0.14 -1.50 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 24 H 0.08 0.73 6.39 -51.93 -0.33 0.40 16 25 H 0.39 6.83 6.05 -40.82 -0.25 6.58 16 26 H 0.05 1.43 7.99 -51.93 -0.42 1.01 16 27 H 0.05 1.42 7.99 -51.93 -0.41 1.00 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.14 2.22 5.80 -46.83 -0.27 1.95 16 30 H 0.07 0.72 6.58 -51.93 -0.34 0.37 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.72 7.59 -51.92 -0.39 0.33 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -31.86 326.46 -11.26 -43.12 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.50 Total: 4.26 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -0.48 Total: 5.25 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -1.29 Total: -53.95 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: -16.19 SS G_CDS: -2.89 Total: -19.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.86 -11.26 -43.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243730676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.702 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds