Wall clock time and date at job start Mon Mar 30 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 120.00200 * 2 1 4 4 S 1.71196 * 120.00009 * 180.02562 * 3 2 1 5 5 N 1.34782 * 120.00228 * 0.02562 * 3 2 1 6 6 C 1.46493 * 120.00139 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47084 * 179.97438 * 6 5 3 8 8 H 1.08003 * 119.99947 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00347 * 180.02562 * 7 6 5 10 10 N 1.31524 * 119.99603 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00387 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47056 * 89.99706 * 11 9 7 13 13 H 1.48501 * 109.47247 * 210.00033 * 11 9 7 14 14 H 1.48505 * 109.47155 * 329.99913 * 11 9 7 15 15 C 1.46505 * 119.99779 * 180.02562 * 2 1 3 16 16 C 1.53126 * 109.52134 * 59.99782 * 15 2 1 17 17 C 1.53034 * 109.27454 * 182.43949 * 16 15 2 18 18 N 1.46847 * 109.52486 * 59.18079 * 17 16 15 19 19 C 1.46906 * 110.99812 * 174.15668 * 18 17 16 20 20 C 1.46848 * 111.19788 * 298.25416 * 18 17 16 21 21 C 1.53035 * 109.52142 * 61.74047 * 20 18 17 22 22 H 1.09002 * 109.46794 * 269.99482 * 1 2 3 23 23 H 1.09002 * 109.46923 * 29.99663 * 1 2 3 24 24 H 1.08995 * 109.47057 * 150.00119 * 1 2 3 25 25 H 0.97001 * 119.99267 * 359.97438 * 5 3 2 26 26 H 1.08994 * 109.47316 * 299.99999 * 6 5 3 27 27 H 1.09000 * 109.47030 * 60.00167 * 6 5 3 28 28 H 0.97003 * 119.99602 * 179.97438 * 10 9 7 29 29 H 1.09001 * 109.57417 * 180.15708 * 15 2 1 30 30 H 1.08997 * 109.50129 * 302.38251 * 16 15 2 31 31 H 1.09006 * 109.50177 * 62.50009 * 16 15 2 32 32 H 1.08999 * 109.45899 * 179.20018 * 17 16 15 33 33 H 1.09006 * 109.46754 * 299.15875 * 17 16 15 34 34 H 1.09000 * 109.46775 * 184.20456 * 19 18 17 35 35 H 1.08995 * 109.47474 * 304.20815 * 19 18 17 36 36 H 1.09001 * 109.47046 * 64.21374 * 19 18 17 37 37 H 1.09000 * 109.46321 * 301.72950 * 20 18 17 38 38 H 1.08999 * 109.45108 * 181.74821 * 20 18 17 39 39 H 1.08994 * 109.50219 * 180.87675 * 21 20 18 40 40 H 1.09010 * 109.53489 * 60.77934 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 16 3.8509 1.1671 -0.0007 5 7 1.4651 2.3344 0.0005 6 6 2.1976 3.6031 0.0011 7 6 1.2184 4.7485 0.0010 8 1 0.1566 4.5512 0.0001 9 6 1.6780 6.0484 0.0009 10 7 2.9711 6.2887 0.0015 11 14 0.4642 7.4683 0.0015 12 1 0.1430 7.8444 1.4018 13 1 1.0639 8.6325 -0.6987 14 1 -0.7794 7.0567 -0.6982 15 6 2.1975 -1.2688 -0.0006 16 6 1.8283 -2.0722 -1.2508 17 6 2.5494 -3.4215 -1.2153 18 7 2.1568 -4.1562 -0.0059 19 6 2.7216 -5.5123 -0.0071 20 6 2.5437 -3.4260 1.2080 21 6 1.8225 -2.0767 1.2448 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 0.4951 2.3344 0.0005 26 1 2.8243 3.6604 0.8910 27 1 2.8243 3.6612 -0.8889 28 1 3.2944 7.2033 0.0010 29 1 3.2695 -1.0716 0.0023 30 1 0.7509 -2.2357 -1.2732 31 1 2.1319 -1.5206 -2.1406 32 1 2.2776 -4.0018 -2.0971 33 1 3.6270 -3.2575 -1.2069 34 1 2.3551 -6.0592 0.8616 35 1 2.4196 -6.0309 -0.9170 36 1 3.8092 -5.4529 0.0333 37 1 3.6213 -3.2618 1.2051 38 1 2.2674 -4.0096 2.0861 39 1 2.1219 -1.5285 2.1380 40 1 0.7448 -2.2398 1.2620 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243730676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:52 Heat of formation + Delta-G solvation = -1.914764 kcal Electronic energy + Delta-G solvation = -19099.004934 eV Core-core repulsion = 16266.807795 eV Total energy + Delta-G solvation = -2832.197140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.06437 -39.30475 -36.90967 -34.81511 -33.06467 -31.89948 -29.84080 -28.90550 -27.16532 -24.94440 -24.19824 -23.79584 -22.60579 -20.67228 -19.66111 -18.44432 -17.94238 -16.82402 -16.56973 -16.49009 -15.99838 -15.71363 -15.44062 -15.31906 -14.95848 -14.34921 -14.27162 -14.21590 -13.44717 -13.41163 -13.21328 -12.98603 -12.90548 -12.62620 -12.44176 -12.32623 -12.23861 -12.13823 -12.09799 -11.58819 -11.56210 -11.53028 -10.74094 -9.69763 -9.33293 -8.96020 -8.53487 -8.29333 -6.49372 0.48643 0.96119 1.42288 1.44952 1.55323 1.65341 2.32627 2.58240 2.96685 3.04474 3.65257 3.79087 3.96034 4.06807 4.14235 4.30142 4.40242 4.45963 4.55586 4.57645 4.60682 4.69805 4.75883 4.87256 4.88491 4.96158 5.00985 5.06969 5.12126 5.16820 5.21634 5.25571 5.46900 5.66241 5.80113 5.94739 6.06335 6.10078 6.46697 6.70796 7.22714 8.80826 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.043664 B = 0.003801 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.108896 B = 7364.237729 C = 7658.064225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.560 5.560 3 C 0.578 3.422 4 S -0.773 6.773 5 N -0.648 5.648 6 C 0.278 3.722 7 C -0.566 4.566 8 H 0.083 0.917 9 C 0.010 3.990 10 N -0.923 5.923 11 Si 0.984 3.016 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.255 1.255 15 C 0.125 3.875 16 C -0.113 4.113 17 C 0.062 3.938 18 N -0.546 5.546 19 C 0.023 3.977 20 C 0.062 3.938 21 C -0.111 4.111 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.116 0.884 25 H 0.408 0.592 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.270 0.730 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.025 0.975 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.022 0.978 37 H 0.025 0.975 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.130 -21.714 -0.098 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.270 5.270 3 C 0.212 3.788 4 S -0.646 6.646 5 N -0.275 5.275 6 C 0.155 3.845 7 C -0.604 4.604 8 H 0.101 0.899 9 C -0.191 4.191 10 N -0.560 5.560 11 Si 0.807 3.193 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.178 1.178 15 C 0.022 3.978 16 C -0.152 4.152 17 C -0.067 4.067 18 N -0.270 5.270 19 C -0.124 4.124 20 C -0.066 4.066 21 C -0.150 4.150 22 H 0.103 0.897 23 H 0.095 0.905 24 H 0.134 0.866 25 H 0.248 0.752 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.043 0.957 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.043 0.957 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.478 -21.541 -0.102 23.534 hybrid contribution -0.075 1.238 0.018 1.240 sum -9.554 -20.303 -0.084 22.439 Atomic orbital electron populations 1.22374 0.76725 1.05573 1.04489 1.47131 1.07695 1.03147 1.68985 1.21678 0.93310 0.83014 0.80799 1.93285 0.95729 1.95114 1.80506 1.45528 1.10517 1.04727 1.66685 1.18904 0.91827 0.77388 0.96349 1.21542 0.93680 0.90907 1.54236 0.89858 1.26003 0.97317 1.02098 0.93669 1.70163 1.15049 1.21836 1.48951 0.85167 0.78387 0.77123 0.78605 1.19604 1.20980 1.17849 1.21798 0.99136 0.79835 0.97076 1.21839 1.02425 0.94786 0.96107 1.22023 0.96976 0.93811 0.93842 1.62032 1.59830 1.03376 1.01811 1.22419 0.97136 0.88966 1.03912 1.22020 0.96995 0.93861 0.93767 1.21810 1.02385 0.94702 0.96122 0.89698 0.90525 0.86554 0.75154 0.97419 0.97435 0.92124 0.88398 0.89057 0.92138 0.88510 0.95710 0.90184 0.90193 0.95929 0.95703 0.88566 0.92222 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.93 9.21 127.77 1.18 2.11 16 2 N -0.56 -15.76 2.77 -710.13 -1.97 -17.72 16 3 C 0.58 23.11 7.70 179.05 1.38 24.48 16 4 S -0.77 -39.24 26.91 -56.49 -1.52 -40.76 16 5 N -0.65 -26.68 5.41 -353.93 -1.92 -28.60 16 6 C 0.28 14.90 4.88 85.63 0.42 15.31 16 7 C -0.57 -29.95 9.28 25.60 0.24 -29.71 16 8 H 0.08 3.94 7.60 -2.91 -0.02 3.91 16 9 C 0.01 0.55 5.46 84.65 0.46 1.01 16 10 N -0.92 -55.30 13.29 21.45 0.28 -55.01 16 11 Si 0.98 41.53 29.54 68.60 2.03 43.56 16 12 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 13 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 15 C 0.13 3.23 2.49 45.07 0.11 3.35 16 16 C -0.11 -2.29 5.40 30.65 0.17 -2.13 16 17 C 0.06 1.12 5.46 86.32 0.47 1.59 16 18 N -0.55 -9.09 4.91 -922.58 -4.53 -13.62 16 19 C 0.02 0.30 9.59 127.69 1.22 1.52 16 20 C 0.06 1.13 5.46 86.32 0.47 1.60 16 21 C -0.11 -2.28 5.41 30.64 0.17 -2.12 16 22 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.08 1.36 6.36 -2.39 -0.02 1.34 16 24 H 0.12 1.42 6.39 -2.39 -0.02 1.41 16 25 H 0.41 13.62 6.05 -92.71 -0.56 13.06 16 26 H 0.01 0.48 7.99 -2.39 -0.02 0.46 16 27 H 0.01 0.47 7.99 -2.39 -0.02 0.45 16 28 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.10 3.39 5.80 -5.63 -0.03 3.35 16 30 H 0.09 1.49 6.58 -2.39 -0.02 1.47 16 31 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.10 1.40 8.09 -2.39 -0.02 1.38 16 33 H 0.02 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 36 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 1.41 8.12 -2.39 -0.02 1.39 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.09 1.51 7.59 -2.38 -0.02 1.49 16 Total: -1.00 -74.00 326.46 -0.90 -74.90 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.44 Total: 20.24 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 6.28 Total: 17.02 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -8.13 Total: -114.95 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: -39.24 SS G_CDS: -1.52 Total: -40.76 kcal Total: -74.00 -0.90 -74.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243730676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.987 kcal (2) G-P(sol) polarization free energy of solvation -74.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds