Wall clock time and date at job start Mon Mar 30 2020 05:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00183 * 2 1 4 4 H 1.48503 * 109.47196 * 240.00477 * 3 2 1 5 5 H 1.48505 * 109.47190 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47352 * 120.00009 * 3 2 1 7 7 C 1.37880 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00126 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00144 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.70065 * 306.13802 * 9 7 2 11 11 C 1.50898 * 109.58488 * 66.49221 * 9 7 2 12 12 C 1.53617 * 111.71354 * 210.79463 * 11 9 7 13 13 O 1.44090 * 112.55512 * 318.63966 * 12 11 9 14 14 C 1.40630 * 116.72504 * 318.11403 * 13 12 11 15 15 C 1.54274 * 109.12671 * 93.90424 * 14 13 12 16 16 N 1.40437 * 111.68772 * 282.76748 * 15 14 13 17 17 C 1.46905 * 111.00015 * 188.30355 * 16 15 14 18 18 H 1.08998 * 109.38602 * 175.49580 * 17 16 15 19 19 C 1.52572 * 109.31106 * 55.73785 * 17 16 15 20 20 C 1.52570 * 110.84473 * 169.27169 * 19 17 16 21 21 C 1.53099 * 109.96134 * 70.48523 * 20 19 17 22 22 S 1.81749 * 108.94593 * 297.17512 * 21 20 19 23 23 C 1.53094 * 109.38691 * 295.29191 * 17 16 15 24 24 H 0.96997 * 119.99987 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.02825 * 90.22341 * 11 9 7 26 26 H 1.09001 * 108.97477 * 331.33477 * 11 9 7 27 27 H 1.09001 * 108.86180 * 197.84865 * 12 11 9 28 28 H 1.08998 * 108.78634 * 79.38061 * 12 11 9 29 29 H 1.08997 * 109.52909 * 334.00825 * 14 13 12 30 30 H 1.09004 * 109.58326 * 213.83228 * 14 13 12 31 31 H 1.08996 * 109.03553 * 162.19850 * 15 14 13 32 32 H 1.08998 * 108.97991 * 43.29688 * 15 14 13 33 33 H 1.09000 * 109.22934 * 289.55099 * 19 17 16 34 34 H 1.09004 * 109.22733 * 48.94711 * 19 17 16 35 35 H 1.09002 * 109.27808 * 310.40185 * 20 19 17 36 36 H 1.08994 * 109.49783 * 190.70089 * 20 19 17 37 37 H 1.08997 * 109.57442 * 177.30315 * 21 20 19 38 38 H 1.09002 * 109.57395 * 57.04297 * 21 20 19 39 39 H 1.09003 * 109.57792 * 63.26615 * 23 17 16 40 40 H 1.09003 * 109.58330 * 302.88149 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.5435 -2.5151 0.8285 11 6 0.5065 -2.6535 -1.3040 12 6 -0.7895 -3.4589 -1.1264 13 8 -0.6210 -4.5911 -0.2511 14 6 0.5593 -5.3398 -0.4057 15 6 1.6218 -4.8187 0.5840 16 7 2.2020 -3.6198 0.1389 17 6 3.3420 -3.2409 0.9845 18 1 3.8206 -2.3536 0.5701 19 6 4.3468 -4.3884 1.0207 20 6 5.6564 -3.9431 1.6645 21 6 5.4527 -3.7240 3.1660 22 16 4.2518 -2.3816 3.4089 23 6 2.8454 -2.9362 2.4002 24 1 -0.4850 0.8400 -0.0004 25 1 1.1479 -3.1657 -2.0212 26 1 0.2603 -1.6645 -1.6906 27 1 -1.1202 -3.8141 -2.1024 28 1 -1.5558 -2.8039 -0.7119 29 1 0.9279 -5.2325 -1.4258 30 1 0.3548 -6.3907 -0.2008 31 1 2.4023 -5.5712 0.6965 32 1 1.1509 -4.6478 1.5521 33 1 3.9283 -5.2139 1.5964 34 1 4.5445 -4.7247 0.0029 35 1 5.9852 -3.0114 1.2041 36 1 6.4164 -4.7091 1.5104 37 1 6.4021 -3.4527 3.6275 38 1 5.0739 -4.6395 3.6205 39 1 2.4147 -3.8368 2.8379 40 1 2.0912 -2.1501 2.3616 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259593794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:53 Heat of formation + Delta-G solvation = -34.940881 kcal Electronic energy + Delta-G solvation = -20705.500280 eV Core-core repulsion = 17839.578270 eV Total energy + Delta-G solvation = -2865.922011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.44018 -37.02611 -34.58769 -33.16645 -30.90133 -30.16807 -27.35734 -26.76630 -26.23641 -23.40030 -22.50752 -21.31362 -19.49622 -18.90456 -16.78570 -16.35495 -15.72295 -15.45928 -14.99044 -14.72620 -14.38858 -14.03498 -13.73837 -13.48787 -13.19269 -12.91164 -12.64694 -12.43434 -11.81427 -11.47649 -11.29015 -11.13675 -11.07222 -10.97153 -10.77937 -10.71864 -10.53714 -10.36229 -9.92606 -9.61167 -9.56307 -9.32800 -8.89427 -8.72462 -8.36587 -7.51195 -6.96003 -6.10067 -4.15272 2.20562 3.00328 3.31182 3.35164 3.39706 4.36772 4.51434 4.80644 4.94325 5.17037 5.20341 5.24619 5.44156 5.57645 5.67195 5.75811 5.76922 5.80128 5.85406 5.91571 6.04364 6.09249 6.22767 6.30615 6.32685 6.34378 6.44390 6.46625 6.70053 6.81103 6.99162 7.17597 7.37734 7.66452 7.77763 8.00408 8.06376 8.25340 8.64296 8.93875 9.51491 10.97472 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013461 B = 0.010412 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.658058 B = 2688.442324 C = 4277.390111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.230 3.770 10 H 0.017 0.983 11 C -0.127 4.127 12 C 0.066 3.934 13 O -0.397 6.397 14 C 0.072 3.928 15 C 0.039 3.961 16 N -0.546 5.546 17 C 0.101 3.899 18 H 0.113 0.887 19 C -0.127 4.127 20 C -0.117 4.117 21 C -0.083 4.083 22 S -0.277 6.277 23 C -0.093 4.093 24 H 0.262 0.738 25 H 0.043 0.957 26 H 0.091 0.909 27 H 0.028 0.972 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.020 0.980 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.260 -8.846 1.349 10.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.088 0.912 9 C 0.125 3.875 10 H 0.035 0.965 11 C -0.166 4.166 12 C -0.009 4.009 13 O -0.316 6.316 14 C -0.006 4.006 15 C -0.092 4.092 16 N -0.270 5.270 17 C -0.008 4.008 18 H 0.131 0.869 19 C -0.165 4.165 20 C -0.157 4.157 21 C -0.231 4.231 22 S -0.052 6.052 23 C -0.243 4.243 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.109 0.891 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.186 -7.926 1.652 10.189 hybrid contribution 0.072 0.049 -0.082 0.120 sum 6.258 -7.876 1.571 10.182 Atomic orbital electron populations 1.69950 1.05859 1.26904 1.49767 1.24912 0.94801 0.99078 0.94942 0.86682 0.79700 0.83009 0.78955 1.20198 1.21405 1.19825 1.21329 0.93366 0.89632 1.51470 0.91222 1.18830 0.89085 0.86312 0.93231 0.96528 1.21966 0.93834 1.00427 1.00357 1.23063 0.99891 0.86413 0.91567 1.87417 1.39841 1.42513 1.61850 1.22348 0.85655 0.93771 0.98847 1.21636 0.96672 0.93804 0.97070 1.59592 1.12235 1.04903 1.50262 1.21864 0.91750 0.98398 0.88833 0.86914 1.21730 0.94894 0.98493 1.01389 1.21684 0.97992 1.02441 0.93533 1.23387 1.00530 0.99524 0.99687 1.86819 1.17383 1.34688 1.66287 1.24253 0.97540 1.04533 0.97966 0.92805 0.93869 0.89063 0.95370 0.89746 0.92766 0.90877 0.91726 0.96188 0.92725 0.90636 0.90553 0.91525 0.88589 0.90688 0.91581 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.07 12.10 55.43 0.67 -23.40 16 2 C 0.07 1.71 5.07 -17.82 -0.09 1.62 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.14 6.75 -34.44 -0.23 -13.37 16 8 H 0.07 1.76 5.22 -52.49 -0.27 1.49 16 9 C 0.23 5.39 0.90 -69.51 -0.06 5.33 16 10 H 0.02 0.46 7.31 -51.93 -0.38 0.08 16 11 C -0.13 -2.86 4.66 -27.47 -0.13 -2.99 16 12 C 0.07 1.36 6.72 37.48 0.25 1.61 16 13 O -0.40 -8.06 10.13 -34.28 -0.35 -8.40 16 14 C 0.07 1.24 6.43 37.82 0.24 1.49 16 15 C 0.04 0.69 4.47 -6.51 -0.03 0.66 16 16 N -0.55 -10.87 4.05 -225.20 -0.91 -11.78 16 17 C 0.10 1.86 1.63 -67.88 -0.11 1.75 16 18 H 0.11 2.37 5.27 -51.93 -0.27 2.09 16 19 C -0.13 -1.87 4.10 -27.17 -0.11 -1.98 16 20 C -0.12 -1.51 5.76 -26.90 -0.15 -1.66 16 21 C -0.08 -1.09 6.45 37.21 0.24 -0.85 16 22 S -0.28 -4.82 22.33 -107.50 -2.40 -7.22 16 23 C -0.09 -1.77 5.01 37.21 0.19 -1.58 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.04 0.94 7.39 -51.93 -0.38 0.55 16 26 H 0.09 2.27 6.43 -51.93 -0.33 1.94 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 29 H 0.05 0.93 7.11 -51.93 -0.37 0.57 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.01 5.79 -51.93 -0.30 0.71 16 32 H 0.02 0.40 6.70 -51.93 -0.35 0.05 16 33 H 0.05 0.77 6.70 -51.93 -0.35 0.42 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.05 8.06 -51.93 -0.42 0.64 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.20 6.85 -51.93 -0.36 0.85 16 40 H 0.12 2.80 6.32 -51.93 -0.33 2.48 16 LS Contribution 301.87 15.07 4.55 4.55 Total: -1.00 -26.56 301.87 -9.67 -36.22 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.21 Total: 4.29 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 0.00 Total: -9.99 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.24 Total: -35.18 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.35 Total: -8.40 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -4.82 SS G_CDS: -2.40 Total: -7.22 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.56 -9.67 -36.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259593794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.280 kcal (2) G-P(sol) polarization free energy of solvation -26.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds