Wall clock time and date at job start Mon Mar 30 2020 05:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00183 * 2 1 4 4 H 1.48503 * 109.47196 * 240.00477 * 3 2 1 5 5 H 1.48505 * 109.47190 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47352 * 120.00009 * 3 2 1 7 7 C 1.37880 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00126 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00144 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.70065 * 306.13802 * 9 7 2 11 11 C 1.50898 * 109.58488 * 66.49221 * 9 7 2 12 12 C 1.53617 * 111.71354 * 210.79463 * 11 9 7 13 13 O 1.44090 * 112.55512 * 318.63966 * 12 11 9 14 14 C 1.40630 * 116.72504 * 318.11403 * 13 12 11 15 15 C 1.54274 * 109.12671 * 93.90424 * 14 13 12 16 16 N 1.40437 * 111.68772 * 282.76748 * 15 14 13 17 17 C 1.46905 * 111.00015 * 188.30355 * 16 15 14 18 18 H 1.08998 * 109.38602 * 175.49580 * 17 16 15 19 19 C 1.52572 * 109.31106 * 55.73785 * 17 16 15 20 20 C 1.52570 * 110.84473 * 169.27169 * 19 17 16 21 21 C 1.53099 * 109.96134 * 70.48523 * 20 19 17 22 22 S 1.81749 * 108.94593 * 297.17512 * 21 20 19 23 23 C 1.53094 * 109.38691 * 295.29191 * 17 16 15 24 24 H 0.96997 * 119.99987 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.02825 * 90.22341 * 11 9 7 26 26 H 1.09001 * 108.97477 * 331.33477 * 11 9 7 27 27 H 1.09001 * 108.86180 * 197.84865 * 12 11 9 28 28 H 1.08998 * 108.78634 * 79.38061 * 12 11 9 29 29 H 1.08997 * 109.52909 * 334.00825 * 14 13 12 30 30 H 1.09004 * 109.58326 * 213.83228 * 14 13 12 31 31 H 1.08996 * 109.03553 * 162.19850 * 15 14 13 32 32 H 1.08998 * 108.97991 * 43.29688 * 15 14 13 33 33 H 1.09000 * 109.22934 * 289.55099 * 19 17 16 34 34 H 1.09004 * 109.22733 * 48.94711 * 19 17 16 35 35 H 1.09002 * 109.27808 * 310.40185 * 20 19 17 36 36 H 1.08994 * 109.49783 * 190.70089 * 20 19 17 37 37 H 1.08997 * 109.57442 * 177.30315 * 21 20 19 38 38 H 1.09002 * 109.57395 * 57.04297 * 21 20 19 39 39 H 1.09003 * 109.57792 * 63.26615 * 23 17 16 40 40 H 1.09003 * 109.58330 * 302.88149 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.5435 -2.5151 0.8285 11 6 0.5065 -2.6535 -1.3040 12 6 -0.7895 -3.4589 -1.1264 13 8 -0.6210 -4.5911 -0.2511 14 6 0.5593 -5.3398 -0.4057 15 6 1.6218 -4.8187 0.5840 16 7 2.2020 -3.6198 0.1389 17 6 3.3420 -3.2409 0.9845 18 1 3.8206 -2.3536 0.5701 19 6 4.3468 -4.3884 1.0207 20 6 5.6564 -3.9431 1.6645 21 6 5.4527 -3.7240 3.1660 22 16 4.2518 -2.3816 3.4089 23 6 2.8454 -2.9362 2.4002 24 1 -0.4850 0.8400 -0.0004 25 1 1.1479 -3.1657 -2.0212 26 1 0.2603 -1.6645 -1.6906 27 1 -1.1202 -3.8141 -2.1024 28 1 -1.5558 -2.8039 -0.7119 29 1 0.9279 -5.2325 -1.4258 30 1 0.3548 -6.3907 -0.2008 31 1 2.4023 -5.5712 0.6965 32 1 1.1509 -4.6478 1.5521 33 1 3.9283 -5.2139 1.5964 34 1 4.5445 -4.7247 0.0029 35 1 5.9852 -3.0114 1.2041 36 1 6.4164 -4.7091 1.5104 37 1 6.4021 -3.4527 3.6275 38 1 5.0739 -4.6395 3.6205 39 1 2.4147 -3.8368 2.8379 40 1 2.0912 -2.1501 2.3616 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259593794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:53 Heat of formation + Delta-G solvation = -51.282489 kcal Electronic energy + Delta-G solvation = -20706.208905 eV Core-core repulsion = 17839.578270 eV Total energy + Delta-G solvation = -2866.630636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.01308 -38.50475 -36.09107 -34.85413 -32.72771 -31.58476 -28.98599 -28.24608 -27.77636 -25.21406 -23.88514 -22.65001 -21.20154 -20.44446 -18.35512 -18.11208 -17.24861 -17.09212 -16.61933 -16.08353 -15.89321 -15.78846 -15.13827 -15.04221 -14.57258 -14.30252 -14.17093 -13.92711 -13.24342 -13.22543 -13.01370 -12.82747 -12.62306 -12.48943 -12.35374 -12.18328 -12.11563 -11.86749 -11.70320 -11.21161 -11.10523 -10.75362 -10.61643 -10.51192 -10.18419 -9.05992 -8.47711 -8.13359 -6.22070 0.88810 1.40272 1.42503 1.48214 1.68544 2.41400 2.99769 3.19483 3.32595 3.78731 3.94025 4.06095 4.07658 4.18556 4.26151 4.32506 4.40101 4.50347 4.57292 4.60218 4.64051 4.70087 4.72914 4.89120 4.91062 5.02878 5.07482 5.12644 5.16513 5.32042 5.33664 5.41254 5.60189 5.76223 5.82533 6.19450 6.33158 6.57096 6.93819 6.97302 7.47354 8.93911 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013461 B = 0.010412 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.658058 B = 2688.442324 C = 4277.390111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.021 3.979 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.068 0.932 9 C 0.242 3.758 10 H -0.030 1.030 11 C -0.119 4.119 12 C 0.074 3.926 13 O -0.412 6.412 14 C 0.067 3.933 15 C 0.037 3.963 16 N -0.544 5.544 17 C 0.102 3.898 18 H 0.083 0.917 19 C -0.119 4.119 20 C -0.113 4.113 21 C -0.066 4.066 22 S -0.322 6.322 23 C -0.079 4.079 24 H 0.260 0.740 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.111 0.889 31 H 0.100 0.900 32 H -0.001 1.001 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.498 -11.186 1.082 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.179 4.179 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.136 3.864 10 H -0.012 1.012 11 C -0.158 4.158 12 C -0.002 4.002 13 O -0.332 6.332 14 C -0.011 4.011 15 C -0.093 4.093 16 N -0.267 5.267 17 C -0.007 4.007 18 H 0.101 0.899 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.214 4.214 22 S -0.097 6.097 23 C -0.229 4.229 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.017 0.983 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.139 0.861 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.442 -10.278 1.383 13.372 hybrid contribution -0.553 0.714 0.067 0.906 sum 7.889 -9.564 1.449 12.482 Atomic orbital electron populations 1.70065 1.06946 1.27162 1.51158 1.25549 0.95428 1.01777 0.95160 0.85855 0.78580 0.79985 0.78795 1.19325 1.21363 1.20306 1.21597 0.93401 0.90706 1.50130 0.91456 1.18509 0.88757 0.87199 0.91982 1.01210 1.21792 0.94991 0.99373 0.99662 1.22873 0.98076 0.86421 0.92785 1.87397 1.41379 1.42276 1.62138 1.22637 0.84411 0.95102 0.98903 1.21772 0.97827 0.93517 0.96190 1.59618 1.11737 1.04455 1.50930 1.21835 0.91937 0.99230 0.87727 0.89892 1.21662 0.94604 0.96866 1.02518 1.21674 0.97706 1.03134 0.92688 1.23540 0.99550 0.97819 1.00468 1.86933 1.18592 1.38186 1.66013 1.23931 0.97195 1.02802 0.98986 0.93137 0.92987 0.91985 0.92492 0.91894 0.92247 0.87136 0.88246 0.98316 0.91317 0.89763 0.91717 0.87575 0.86130 0.88919 0.91155 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.95 12.10 21.45 0.26 -51.69 16 2 C 0.02 1.11 5.07 84.65 0.43 1.54 16 3 Si 0.94 43.87 29.54 68.60 2.03 45.90 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.52 -27.33 6.75 25.60 0.17 -27.15 16 8 H 0.07 3.53 5.22 -2.91 -0.02 3.51 16 9 C 0.24 11.72 0.90 43.35 0.04 11.76 16 10 H -0.03 -1.71 7.31 -2.39 -0.02 -1.72 16 11 C -0.12 -5.48 4.66 30.12 0.14 -5.34 16 12 C 0.07 3.06 6.72 72.19 0.48 3.55 16 13 O -0.41 -16.48 10.13 -145.58 -1.47 -17.95 16 14 C 0.07 2.15 6.43 72.41 0.47 2.62 16 15 C 0.04 1.26 4.47 87.91 0.39 1.65 16 16 N -0.54 -21.52 4.05 -866.39 -3.51 -25.03 16 17 C 0.10 3.72 1.63 44.80 0.07 3.79 16 18 H 0.08 3.53 5.27 -2.39 -0.01 3.52 16 19 C -0.12 -3.10 4.10 30.31 0.12 -2.98 16 20 C -0.11 -2.45 5.76 30.48 0.18 -2.28 16 21 C -0.07 -1.50 6.45 72.02 0.46 -1.03 16 22 S -0.32 -11.07 22.33 -56.49 -1.26 -12.33 16 23 C -0.08 -3.07 5.01 72.01 0.36 -2.71 16 24 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 25 H 0.05 2.24 7.39 -2.38 -0.02 2.23 16 26 H 0.06 3.21 6.43 -2.39 -0.02 3.19 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.06 1.88 7.11 -2.39 -0.02 1.86 16 30 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.10 2.72 5.79 -2.39 -0.01 2.71 16 32 H 0.00 -0.05 6.70 -2.39 -0.02 -0.06 16 33 H 0.07 1.63 6.70 -2.39 -0.02 1.62 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.06 1.60 8.06 -2.39 -0.02 1.58 16 36 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 39 H 0.07 2.59 6.85 -2.39 -0.02 2.57 16 40 H 0.07 3.58 6.32 -2.39 -0.02 3.57 16 Total: -1.00 -61.00 301.87 0.39 -60.61 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 1.02 Total: 17.08 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 3.32 Total: -16.59 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -3.25 Total: -76.71 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -1.47 Total: -17.95 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -11.07 SS G_CDS: -1.26 Total: -12.33 kcal Total: -61.00 0.39 -60.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259593794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.326 kcal (2) G-P(sol) polarization free energy of solvation -60.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds