Wall clock time and date at job start Mon Mar 30 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00131 * 2 1 4 4 H 1.48503 * 109.47139 * 270.00055 * 3 2 1 5 5 H 1.48503 * 109.47279 * 29.99861 * 3 2 1 6 6 H 1.48504 * 109.47257 * 149.99800 * 3 2 1 7 7 C 1.37881 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99649 * 0.02562 * 7 2 1 10 10 H 1.08999 * 108.78994 * 304.39328 * 9 7 2 11 11 C 1.46575 * 108.89309 * 62.94418 * 9 7 2 12 12 C 1.54358 * 111.47649 * 181.56003 * 11 9 7 13 13 O 1.40314 * 108.92473 * 283.02784 * 12 11 9 14 14 C 1.44241 * 117.15686 * 93.10718 * 13 12 11 15 15 C 1.53839 * 112.83801 * 317.91853 * 14 13 12 16 16 N 1.44348 * 112.12427 * 318.50549 * 15 14 13 17 17 C 1.46904 * 110.99744 * 215.88260 * 16 15 14 18 18 H 1.09001 * 109.38463 * 179.27593 * 17 16 15 19 19 C 1.52577 * 109.38837 * 299.07684 * 17 16 15 20 20 C 1.52584 * 110.72395 * 190.72722 * 19 17 16 21 21 C 1.53096 * 109.87942 * 289.37489 * 20 19 17 22 22 S 1.81551 * 108.93822 * 63.06528 * 21 20 19 23 23 C 1.53098 * 109.31099 * 59.52550 * 17 16 15 24 24 H 0.97000 * 119.99662 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.07885 * 302.07591 * 11 9 7 26 26 H 1.09004 * 109.07567 * 61.05128 * 11 9 7 27 27 H 1.09009 * 109.56135 * 42.85579 * 12 11 9 28 28 H 1.09001 * 109.56459 * 163.19103 * 12 11 9 29 29 H 1.09003 * 108.80802 * 78.78903 * 14 13 12 30 30 H 1.09005 * 108.80779 * 197.16399 * 14 13 12 31 31 H 1.08999 * 108.95116 * 197.81971 * 15 14 13 32 32 H 1.09003 * 108.94710 * 79.18698 * 15 14 13 33 33 H 1.08995 * 109.22733 * 70.40589 * 19 17 16 34 34 H 1.09004 * 109.19387 * 311.02536 * 19 17 16 35 35 H 1.09006 * 109.38975 * 49.47536 * 20 19 17 36 36 H 1.09003 * 109.38914 * 169.27190 * 20 19 17 37 37 H 1.08996 * 109.57828 * 182.78003 * 21 20 19 38 38 H 1.08997 * 109.57302 * 303.17462 * 21 20 19 39 39 H 1.09000 * 109.57007 * 296.68238 * 23 17 16 40 40 H 1.08994 * 109.57681 * 56.93756 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5703 -2.5115 0.8518 11 6 0.4679 -2.5950 -1.2348 12 6 -0.3606 -3.8967 -1.2791 13 8 0.4888 -4.9659 -1.6019 14 6 1.0666 -5.7022 -0.5044 15 6 1.5507 -4.7911 0.6368 16 7 2.2164 -3.6091 0.1435 17 6 3.3309 -3.2278 1.0212 18 1 3.8219 -2.3419 0.6183 19 6 2.7947 -2.9195 2.4160 20 6 3.8733 -2.2698 3.2778 21 6 4.9482 -3.3010 3.6317 22 16 5.7541 -3.8601 2.1040 23 6 4.3374 -4.3793 1.0909 24 1 -0.4849 0.8401 0.0004 25 1 -0.2067 -1.7411 -1.2961 26 1 1.1453 -2.5746 -2.0885 27 1 -0.8153 -4.0733 -0.3043 28 1 -1.1396 -3.8079 -2.0363 29 1 0.3189 -6.3911 -0.1111 30 1 1.9141 -6.2786 -0.8754 31 1 2.2424 -5.3502 1.2668 32 1 0.6924 -4.4896 1.2372 33 1 2.4681 -3.8462 2.8879 34 1 1.9457 -2.2412 2.3317 35 1 4.3289 -1.4465 2.7275 36 1 3.4230 -1.8874 4.1938 37 1 5.6899 -2.8451 4.2875 38 1 4.4870 -4.1513 4.1341 39 1 3.8644 -5.2507 1.5438 40 1 4.6767 -4.6291 0.0857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259593797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:56 Heat of formation + Delta-G solvation = -30.992314 kcal Electronic energy + Delta-G solvation = -20739.982710 eV Core-core repulsion = 17874.231922 eV Total energy + Delta-G solvation = -2865.750788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.39781 -36.95656 -34.45111 -33.25733 -31.07691 -30.16209 -27.70892 -26.43225 -26.33425 -23.36746 -22.20553 -21.26806 -19.97291 -18.73901 -16.92380 -16.49061 -15.60092 -15.46791 -14.88652 -14.54285 -14.51658 -14.20747 -13.68616 -13.51912 -13.10449 -12.93294 -12.58847 -12.54721 -12.10522 -11.44284 -11.27689 -11.14980 -10.93735 -10.93086 -10.74861 -10.63578 -10.60067 -10.37799 -9.90133 -9.87441 -9.53123 -9.37813 -8.98628 -8.61656 -8.31764 -7.44919 -7.23789 -6.12324 -4.17649 2.04778 2.76646 3.25023 3.32365 3.35245 4.32385 4.46981 4.90157 5.04557 5.12664 5.17046 5.21158 5.38467 5.45030 5.55154 5.64420 5.71431 5.82797 5.90462 5.97917 5.99277 6.06413 6.11827 6.29265 6.37904 6.41999 6.44198 6.46186 6.74380 6.85752 7.01021 7.32752 7.41429 7.68797 7.76105 8.06935 8.15719 8.27976 8.50215 8.90006 9.48629 10.94087 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.010261 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.726987 B = 2728.196976 C = 4385.602821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.070 0.930 9 C 0.218 3.782 10 H 0.004 0.996 11 C -0.129 4.129 12 C 0.065 3.935 13 O -0.387 6.387 14 C 0.079 3.921 15 C 0.017 3.983 16 N -0.519 5.519 17 C 0.095 3.905 18 H 0.114 0.886 19 C -0.152 4.152 20 C -0.115 4.115 21 C -0.078 4.078 22 S -0.278 6.278 23 C -0.072 4.072 24 H 0.262 0.738 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 -7.624 5.013 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.087 0.913 9 C 0.113 3.887 10 H 0.021 0.979 11 C -0.168 4.168 12 C -0.012 4.012 13 O -0.306 6.306 14 C 0.001 3.999 15 C -0.113 4.113 16 N -0.243 5.243 17 C -0.014 4.014 18 H 0.132 0.868 19 C -0.191 4.191 20 C -0.154 4.154 21 C -0.226 4.226 22 S -0.053 6.053 23 C -0.220 4.220 24 H 0.072 0.928 25 H 0.120 0.880 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.069 -7.679 4.114 10.080 hybrid contribution -1.337 1.153 1.487 2.308 sum 3.732 -6.527 5.601 9.376 Atomic orbital electron populations 1.69854 1.05891 1.26717 1.50614 1.24907 0.94829 0.99125 0.95034 0.86590 0.79870 0.83316 0.78307 1.20566 1.21369 1.19730 1.21424 0.93408 0.89792 1.50709 0.91252 1.18255 0.89302 0.87199 0.93937 0.97851 1.21288 0.99485 0.96275 0.99728 1.22551 0.92198 0.87923 0.98516 1.87328 1.64434 1.46418 1.32392 1.22864 0.96271 0.92521 0.88214 1.22504 0.97970 0.94636 0.96205 1.61706 1.11167 1.05020 1.46375 1.21944 0.91638 0.96889 0.90948 0.86810 1.22179 1.00120 1.00573 0.96257 1.21649 0.95635 0.97907 1.00235 1.23417 1.01175 1.01722 0.96333 1.86603 1.17305 1.84350 1.16993 1.23728 0.95869 1.00802 1.01641 0.92837 0.87997 0.92798 0.94876 0.91501 0.94525 0.90386 0.91626 0.95053 0.93819 0.88747 0.90350 0.91642 0.88523 0.90561 0.90694 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.94 11.43 55.43 0.63 -23.30 16 2 C 0.06 1.62 5.28 -17.82 -0.09 1.53 16 3 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.52 -12.94 6.85 -34.44 -0.24 -13.18 16 8 H 0.07 1.76 5.25 -52.49 -0.28 1.48 16 9 C 0.22 5.08 0.87 -71.44 -0.06 5.01 16 10 H 0.00 0.10 6.65 -51.93 -0.35 -0.24 16 11 C -0.13 -3.01 4.84 -29.08 -0.14 -3.15 16 12 C 0.06 1.30 6.39 37.87 0.24 1.54 16 13 O -0.39 -7.66 10.27 -33.67 -0.35 -8.00 16 14 C 0.08 1.30 7.02 37.59 0.26 1.57 16 15 C 0.02 0.29 3.87 -4.75 -0.02 0.27 16 16 N -0.52 -10.36 4.35 -224.81 -0.98 -11.34 16 17 C 0.10 1.75 1.61 -67.88 -0.11 1.64 16 18 H 0.11 2.41 5.31 -51.93 -0.28 2.13 16 19 C -0.15 -2.65 4.18 -27.16 -0.11 -2.76 16 20 C -0.11 -1.74 5.76 -26.89 -0.15 -1.90 16 21 C -0.08 -1.04 6.43 37.21 0.24 -0.80 16 22 S -0.28 -4.21 22.33 -107.50 -2.40 -6.61 16 23 C -0.07 -1.13 5.51 37.21 0.20 -0.92 16 24 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 25 H 0.10 2.60 6.01 -51.93 -0.31 2.29 16 26 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.03 0.65 7.15 -51.92 -0.37 0.28 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.00 4.99 -51.93 -0.26 0.74 16 32 H 0.03 0.58 6.72 -51.93 -0.35 0.23 16 33 H 0.04 0.71 7.28 -51.93 -0.38 0.33 16 34 H 0.09 1.97 5.91 -51.93 -0.31 1.66 16 35 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.09 6.09 -51.93 -0.32 0.77 16 40 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 LS Contribution 300.72 15.07 4.53 4.53 Total: -1.00 -26.25 300.72 -9.68 -35.93 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.12 Total: 4.51 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 0.02 Total: -11.14 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.34 Total: -34.64 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.35 Total: -8.00 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -2.40 Total: -6.61 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.25 -9.68 -35.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259593797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.936 kcal (2) G-P(sol) polarization free energy of solvation -26.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds