Wall clock time and date at job start Mon Mar 30 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00131 * 2 1 4 4 H 1.48503 * 109.47139 * 270.00055 * 3 2 1 5 5 H 1.48503 * 109.47279 * 29.99861 * 3 2 1 6 6 H 1.48504 * 109.47257 * 149.99800 * 3 2 1 7 7 C 1.37881 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99649 * 0.02562 * 7 2 1 10 10 H 1.08999 * 108.78994 * 304.39328 * 9 7 2 11 11 C 1.46575 * 108.89309 * 62.94418 * 9 7 2 12 12 C 1.54358 * 111.47649 * 181.56003 * 11 9 7 13 13 O 1.40314 * 108.92473 * 283.02784 * 12 11 9 14 14 C 1.44241 * 117.15686 * 93.10718 * 13 12 11 15 15 C 1.53839 * 112.83801 * 317.91853 * 14 13 12 16 16 N 1.44348 * 112.12427 * 318.50549 * 15 14 13 17 17 C 1.46904 * 110.99744 * 215.88260 * 16 15 14 18 18 H 1.09001 * 109.38463 * 179.27593 * 17 16 15 19 19 C 1.52577 * 109.38837 * 299.07684 * 17 16 15 20 20 C 1.52584 * 110.72395 * 190.72722 * 19 17 16 21 21 C 1.53096 * 109.87942 * 289.37489 * 20 19 17 22 22 S 1.81551 * 108.93822 * 63.06528 * 21 20 19 23 23 C 1.53098 * 109.31099 * 59.52550 * 17 16 15 24 24 H 0.97000 * 119.99662 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.07885 * 302.07591 * 11 9 7 26 26 H 1.09004 * 109.07567 * 61.05128 * 11 9 7 27 27 H 1.09009 * 109.56135 * 42.85579 * 12 11 9 28 28 H 1.09001 * 109.56459 * 163.19103 * 12 11 9 29 29 H 1.09003 * 108.80802 * 78.78903 * 14 13 12 30 30 H 1.09005 * 108.80779 * 197.16399 * 14 13 12 31 31 H 1.08999 * 108.95116 * 197.81971 * 15 14 13 32 32 H 1.09003 * 108.94710 * 79.18698 * 15 14 13 33 33 H 1.08995 * 109.22733 * 70.40589 * 19 17 16 34 34 H 1.09004 * 109.19387 * 311.02536 * 19 17 16 35 35 H 1.09006 * 109.38975 * 49.47536 * 20 19 17 36 36 H 1.09003 * 109.38914 * 169.27190 * 20 19 17 37 37 H 1.08996 * 109.57828 * 182.78003 * 21 20 19 38 38 H 1.08997 * 109.57302 * 303.17462 * 21 20 19 39 39 H 1.09000 * 109.57007 * 296.68238 * 23 17 16 40 40 H 1.08994 * 109.57681 * 56.93756 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5703 -2.5115 0.8518 11 6 0.4679 -2.5950 -1.2348 12 6 -0.3606 -3.8967 -1.2791 13 8 0.4888 -4.9659 -1.6019 14 6 1.0666 -5.7022 -0.5044 15 6 1.5507 -4.7911 0.6368 16 7 2.2164 -3.6091 0.1435 17 6 3.3309 -3.2278 1.0212 18 1 3.8219 -2.3419 0.6183 19 6 2.7947 -2.9195 2.4160 20 6 3.8733 -2.2698 3.2778 21 6 4.9482 -3.3010 3.6317 22 16 5.7541 -3.8601 2.1040 23 6 4.3374 -4.3793 1.0909 24 1 -0.4849 0.8401 0.0004 25 1 -0.2067 -1.7411 -1.2961 26 1 1.1453 -2.5746 -2.0885 27 1 -0.8153 -4.0733 -0.3043 28 1 -1.1396 -3.8079 -2.0363 29 1 0.3189 -6.3911 -0.1111 30 1 1.9141 -6.2786 -0.8754 31 1 2.2424 -5.3502 1.2668 32 1 0.6924 -4.4896 1.2372 33 1 2.4681 -3.8462 2.8879 34 1 1.9457 -2.2412 2.3317 35 1 4.3289 -1.4465 2.7275 36 1 3.4230 -1.8874 4.1938 37 1 5.6899 -2.8451 4.2875 38 1 4.4870 -4.1513 4.1341 39 1 3.8644 -5.2507 1.5438 40 1 4.6767 -4.6291 0.0857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259593797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:56 Heat of formation + Delta-G solvation = -46.873337 kcal Electronic energy + Delta-G solvation = -20740.671363 eV Core-core repulsion = 17874.231922 eV Total energy + Delta-G solvation = -2866.439441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96766 -38.44033 -36.08279 -34.84748 -32.89348 -31.50989 -29.28640 -28.03415 -27.74755 -25.16100 -23.57306 -22.62694 -21.71705 -20.30099 -18.50902 -18.09805 -17.22313 -16.97533 -16.50572 -16.07533 -15.97012 -15.59441 -15.20148 -14.95357 -14.63846 -14.28460 -14.24600 -13.90065 -13.51525 -13.13553 -12.96927 -12.82506 -12.63903 -12.38969 -12.28917 -12.18064 -12.05951 -11.88174 -11.64460 -11.42181 -11.25310 -10.76455 -10.59354 -10.50522 -10.07364 -8.89242 -8.61432 -8.12283 -6.21958 0.86921 1.38398 1.41725 1.49233 1.58302 2.40539 2.97681 3.18758 3.42882 3.76099 3.88652 3.93378 4.05826 4.14908 4.23233 4.29571 4.39512 4.51679 4.53895 4.62363 4.62566 4.67377 4.72762 4.78176 4.84607 4.97612 5.03000 5.06775 5.11818 5.28042 5.42905 5.57704 5.59124 5.73919 5.87264 6.31289 6.35853 6.63882 6.79769 6.94477 7.46832 8.93294 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.010261 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.726987 B = 2728.196976 C = 4385.602821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.019 3.981 3 Si 0.943 3.057 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.064 0.936 9 C 0.231 3.769 10 H -0.027 1.027 11 C -0.124 4.124 12 C 0.078 3.922 13 O -0.401 6.401 14 C 0.072 3.928 15 C 0.018 3.982 16 N -0.526 5.526 17 C 0.098 3.902 18 H 0.080 0.920 19 C -0.143 4.143 20 C -0.112 4.112 21 C -0.067 4.067 22 S -0.291 6.291 23 C -0.062 4.062 24 H 0.260 0.740 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.018 0.982 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.972 -9.259 6.144 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.180 4.180 3 Si 0.770 3.230 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.124 3.876 10 H -0.009 1.009 11 C -0.163 4.163 12 C 0.001 3.999 13 O -0.320 6.320 14 C -0.005 4.005 15 C -0.112 4.112 16 N -0.250 5.250 17 C -0.012 4.012 18 H 0.098 0.902 19 C -0.182 4.182 20 C -0.151 4.151 21 C -0.215 4.215 22 S -0.065 6.065 23 C -0.210 4.210 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.137 0.863 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.164 -9.330 5.250 12.353 hybrid contribution -1.635 1.637 1.163 2.589 sum 4.529 -7.693 6.413 10.992 Atomic orbital electron populations 1.69969 1.06928 1.27080 1.51745 1.25537 0.95476 1.01785 0.95166 0.85767 0.78969 0.80208 0.78041 1.20689 1.21187 1.19219 1.21677 0.93315 0.90988 1.49670 0.91826 1.17966 0.89194 0.87851 0.92554 1.00928 1.21145 0.98997 0.97447 0.98720 1.22335 0.91894 0.86456 0.99234 1.87301 1.64489 1.46110 1.34095 1.23143 0.97717 0.92292 0.87304 1.22570 0.97912 0.93817 0.96891 1.61636 1.10905 1.04813 1.47660 1.21827 0.91501 0.96962 0.90887 0.90199 1.22015 0.99374 1.00450 0.96378 1.21590 0.95566 0.97839 1.00143 1.23450 1.00843 1.01738 0.95491 1.86704 1.17168 1.84512 1.18088 1.23558 0.95352 0.99945 1.02141 0.93047 0.90698 0.94952 0.94598 0.89972 0.91692 0.88438 0.88892 0.96404 0.92158 0.92871 0.92406 0.90063 0.86323 0.88586 0.88772 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.95 11.43 21.45 0.25 -50.70 16 2 C 0.02 1.03 5.28 84.66 0.45 1.47 16 3 Si 0.94 42.90 29.54 68.60 2.03 44.93 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.52 -26.96 6.85 25.60 0.18 -26.79 16 8 H 0.06 3.34 5.25 -2.91 -0.02 3.33 16 9 C 0.23 11.05 0.87 42.01 0.04 11.09 16 10 H -0.03 -1.43 6.65 -2.39 -0.02 -1.45 16 11 C -0.12 -5.96 4.84 29.07 0.14 -5.82 16 12 C 0.08 3.10 6.39 72.44 0.46 3.56 16 13 O -0.40 -15.27 10.27 -143.39 -1.47 -16.74 16 14 C 0.07 2.19 7.02 72.27 0.51 2.70 16 15 C 0.02 0.58 3.87 87.06 0.34 0.92 16 16 N -0.53 -20.96 4.35 -865.16 -3.76 -24.72 16 17 C 0.10 3.55 1.61 44.81 0.07 3.62 16 18 H 0.08 3.45 5.31 -2.39 -0.01 3.44 16 19 C -0.14 -4.89 4.18 30.32 0.13 -4.76 16 20 C -0.11 -3.23 5.76 30.49 0.18 -3.05 16 21 C -0.07 -1.57 6.43 72.01 0.46 -1.11 16 22 S -0.29 -8.12 22.33 -56.49 -1.26 -9.38 16 23 C -0.06 -1.81 5.51 72.01 0.40 -1.41 16 24 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 25 H 0.07 3.99 6.01 -2.39 -0.01 3.98 16 26 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.04 1.40 7.15 -2.38 -0.02 1.38 16 28 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 31 H 0.09 2.53 4.99 -2.39 -0.01 2.52 16 32 H 0.02 0.64 6.72 -2.39 -0.02 0.63 16 33 H 0.06 1.83 7.28 -2.39 -0.02 1.81 16 34 H 0.05 2.27 5.91 -2.38 -0.01 2.26 16 35 H 0.06 1.91 8.06 -2.38 -0.02 1.89 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.09 2.39 6.09 -2.39 -0.01 2.38 16 40 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -58.14 300.72 0.14 -58.00 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 1.03 Total: 18.20 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 3.34 Total: -19.58 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -3.52 Total: -75.42 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -1.47 Total: -16.74 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.26 Total: -9.38 kcal Total: -58.14 0.14 -58.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259593797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.123 kcal (2) G-P(sol) polarization free energy of solvation -58.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds