Wall clock time and date at job start Mon Mar 30 2020 05:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99480 * 2 1 4 4 H 1.48498 * 109.46692 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47492 * 299.99927 * 3 2 1 6 6 H 1.48503 * 109.47012 * 60.00539 * 3 2 1 7 7 C 1.37872 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99904 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00027 * 359.97438 * 7 2 1 10 10 H 1.09000 * 108.64830 * 55.89343 * 9 7 2 11 11 C 1.53891 * 108.78271 * 297.61952 * 9 7 2 12 12 C 1.50955 * 109.17135 * 155.08489 * 11 9 7 13 13 S 1.82607 * 111.06547 * 94.68868 * 12 11 9 14 14 C 1.82258 * 104.17360 * 319.44392 * 13 12 11 15 15 C 1.51079 * 110.48311 * 319.75900 * 14 13 12 16 16 N 1.38905 * 108.78030 * 174.17426 * 9 7 2 17 17 C 1.46902 * 111.00192 * 314.36259 * 16 9 7 18 18 C 1.53004 * 109.47258 * 292.46975 * 17 16 9 19 19 H 1.08997 * 110.80074 * 312.84417 * 18 17 16 20 20 C 1.54802 * 110.90417 * 189.22043 * 18 17 16 21 21 C 1.54103 * 104.18835 * 220.91956 * 20 18 17 22 22 O 1.43746 * 107.28903 * 357.96980 * 21 20 18 23 23 C 1.44421 * 107.00090 * 26.48828 * 22 21 20 24 24 H 0.97005 * 120.00645 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.51729 * 274.99128 * 11 9 7 26 26 H 1.09002 * 109.52454 * 35.10865 * 11 9 7 27 27 H 1.09003 * 109.15545 * 215.09547 * 12 11 9 28 28 H 1.08997 * 109.16137 * 334.27560 * 12 11 9 29 29 H 1.09007 * 109.30426 * 199.44473 * 14 13 12 30 30 H 1.09007 * 109.29982 * 80.06666 * 14 13 12 31 31 H 1.09002 * 109.76849 * 337.12867 * 15 14 13 32 32 H 1.08997 * 109.76910 * 216.34418 * 15 14 13 33 33 H 1.09002 * 109.46490 * 52.46610 * 17 16 9 34 34 H 1.08998 * 109.46705 * 172.46470 * 17 16 9 35 35 H 1.09003 * 110.49106 * 339.59534 * 20 18 17 36 36 H 1.09008 * 110.49174 * 102.11186 * 20 18 17 37 37 H 1.08993 * 109.88179 * 117.39343 * 21 20 18 38 38 H 1.09001 * 109.87676 * 238.39764 * 21 20 18 39 39 H 1.09000 * 110.64705 * 201.47891 * 23 22 21 40 40 H 1.09006 * 110.59965 * 78.47135 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5750 -2.5113 -0.8554 11 6 0.4189 -2.5909 1.2907 12 6 -0.7553 -3.5110 1.0594 13 16 -0.3719 -5.2128 1.5993 14 6 1.3472 -5.4772 1.0545 15 6 1.5661 -4.8772 -0.3146 16 7 2.1605 -3.5405 -0.1346 17 6 3.1385 -3.2525 -1.1923 18 6 2.4346 -3.2496 -2.5508 19 1 1.7914 -4.1234 -2.6553 20 6 3.4631 -3.1794 -3.7056 21 6 2.8309 -2.2021 -4.7155 22 8 1.5512 -1.8126 -4.1894 23 6 1.6281 -1.9417 -2.7530 24 1 -0.4851 0.8400 0.0004 25 1 1.0383 -2.9861 2.0958 26 1 0.0576 -1.5990 1.5625 27 1 -1.6142 -3.1427 1.6203 28 1 -0.9996 -3.5191 -0.0028 29 1 1.5525 -6.5471 1.0161 30 1 2.0268 -5.0083 1.7662 31 1 0.6126 -4.7896 -0.8355 32 1 2.2443 -5.5079 -0.8894 33 1 3.5889 -2.2760 -1.0144 34 1 3.9151 -4.0173 -1.1870 35 1 4.4159 -2.7919 -3.3449 36 1 3.5983 -4.1626 -4.1565 37 1 3.4671 -1.3246 -4.8302 38 1 2.7034 -2.6958 -5.6789 39 1 0.6315 -2.0346 -2.3215 40 1 2.1577 -1.0932 -2.3195 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259647881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:20 Heat of formation + Delta-G solvation = -25.262135 kcal Electronic energy + Delta-G solvation = -20842.198652 eV Core-core repulsion = 17976.696343 eV Total energy + Delta-G solvation = -2865.502309 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.64996 -37.68015 -33.52716 -32.71409 -31.22786 -30.50766 -28.32276 -26.77686 -24.71776 -23.10242 -22.20566 -21.31566 -20.17598 -19.17982 -16.70162 -16.47465 -15.84954 -15.08097 -15.04936 -14.69853 -14.50578 -14.08546 -13.80641 -13.24691 -12.84760 -12.70258 -12.60352 -12.20088 -11.80321 -11.66997 -11.53740 -11.23609 -11.10503 -10.99179 -10.75374 -10.68158 -10.44426 -10.24438 -10.01190 -9.80451 -9.65575 -9.16790 -9.06975 -8.87829 -8.39600 -7.20575 -7.10425 -6.16370 -4.20491 2.37953 3.15825 3.21232 3.31048 3.31800 4.28285 4.55722 4.73982 5.07823 5.13857 5.18024 5.39055 5.50477 5.58886 5.60009 5.82155 5.82761 5.85251 6.00131 6.01839 6.05947 6.10156 6.12733 6.23298 6.39907 6.42855 6.48191 6.57949 6.74748 6.90282 6.99641 7.06193 7.32431 7.49068 7.59091 7.71820 7.97657 8.28039 8.59344 8.90154 9.44156 10.89157 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.009911 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.677714 B = 2824.434625 C = 4159.234914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.066 3.934 3 Si 0.885 3.115 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.512 4.512 8 H 0.068 0.932 9 C 0.213 3.787 10 H 0.008 0.992 11 C -0.106 4.106 12 C -0.050 4.050 13 S -0.333 6.333 14 C -0.059 4.059 15 C 0.059 3.941 16 N -0.544 5.544 17 C 0.078 3.922 18 C -0.149 4.149 19 H 0.068 0.932 20 C -0.148 4.148 21 C 0.049 3.951 22 O -0.395 6.395 23 C 0.057 3.943 24 H 0.262 0.738 25 H 0.049 0.951 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.528 -6.788 -3.297 8.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.137 4.137 3 Si 0.713 3.287 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.105 3.895 10 H 0.025 0.975 11 C -0.146 4.146 12 C -0.198 4.198 13 S -0.108 6.108 14 C -0.207 4.207 15 C -0.070 4.070 16 N -0.266 5.266 17 C -0.050 4.050 18 C -0.170 4.170 19 H 0.086 0.914 20 C -0.186 4.186 21 C -0.028 4.028 22 O -0.315 6.315 23 C -0.018 4.018 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.121 0.879 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.728 -7.300 -2.448 8.554 hybrid contribution 0.811 1.657 -1.168 2.183 sum 4.538 -5.642 -3.615 8.093 Atomic orbital electron populations 1.69909 1.05763 1.26767 1.49443 1.24894 0.94811 0.98904 0.95084 0.86641 0.80230 0.84107 0.77772 1.19703 1.20945 1.20938 1.21322 0.93142 0.89503 1.51040 0.91459 1.18147 0.90457 0.88008 0.92918 0.97545 1.21728 0.93477 0.99767 0.99638 1.23380 1.02706 0.90506 1.03164 1.86469 1.19473 1.24233 1.80645 1.23217 0.94231 1.02669 1.00631 1.21985 0.98717 0.91788 0.94500 1.58488 1.21151 1.01645 1.45327 1.22232 0.93827 1.02835 0.86086 1.23406 0.97486 0.99461 0.96610 0.91360 1.22918 0.99602 0.99618 0.96501 1.22989 0.86219 0.96708 0.96931 1.88840 1.31675 1.88567 1.22420 1.24264 1.02504 0.96647 0.78350 0.92752 0.93198 0.87903 0.89799 0.90950 0.89393 0.88739 0.93762 0.91202 0.88125 0.92969 0.90855 0.91543 0.93244 0.91170 0.87968 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.63 11.63 55.43 0.64 -21.98 16 2 C 0.07 1.62 4.86 -17.82 -0.09 1.54 16 3 Si 0.88 19.79 29.54 -169.99 -5.02 14.77 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.51 -12.06 5.05 -34.44 -0.17 -12.23 16 8 H 0.07 1.61 5.78 -52.48 -0.30 1.30 16 9 C 0.21 4.61 0.83 -72.49 -0.06 4.55 16 10 H 0.01 0.18 4.03 -51.93 -0.21 -0.03 16 11 C -0.11 -2.32 4.76 -27.29 -0.13 -2.45 16 12 C -0.05 -0.99 5.75 36.13 0.21 -0.78 16 13 S -0.33 -5.96 22.05 -107.50 -2.37 -8.33 16 14 C -0.06 -0.95 5.85 36.19 0.21 -0.74 16 15 C 0.06 0.98 4.07 -4.52 -0.02 0.97 16 16 N -0.54 -10.27 3.86 -234.11 -0.90 -11.17 16 17 C 0.08 1.35 4.45 -3.82 -0.02 1.33 16 18 C -0.15 -2.53 2.87 -88.62 -0.25 -2.78 16 19 H 0.07 1.18 6.86 -51.93 -0.36 0.82 16 20 C -0.15 -2.10 6.60 -25.21 -0.17 -2.27 16 21 C 0.05 0.75 7.70 37.73 0.29 1.04 16 22 O -0.40 -7.88 11.52 -35.23 -0.41 -8.28 16 23 C 0.06 1.16 5.31 38.21 0.20 1.36 16 24 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 25 H 0.05 1.10 7.18 -51.93 -0.37 0.73 16 26 H 0.10 2.52 6.04 -51.93 -0.31 2.21 16 27 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.07 1.50 6.82 -51.93 -0.35 1.14 16 29 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 30 H 0.09 1.62 7.56 -51.92 -0.39 1.23 16 31 H 0.04 0.81 6.54 -51.93 -0.34 0.47 16 32 H 0.07 1.02 7.57 -51.93 -0.39 0.63 16 33 H 0.10 1.93 5.05 -51.93 -0.26 1.66 16 34 H 0.05 0.80 8.03 -51.93 -0.42 0.38 16 35 H 0.07 0.96 7.86 -51.93 -0.41 0.56 16 36 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.10 2.36 5.79 -51.93 -0.30 2.06 16 40 H 0.09 1.95 5.96 -51.93 -0.31 1.64 16 LS Contribution 298.11 15.07 4.49 4.49 Total: -1.00 -24.91 298.11 -9.54 -34.44 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.98 Total: 6.52 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 0.01 Total: -10.45 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: -0.26 Total: -33.15 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.41 Total: -8.28 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: -5.96 SS G_CDS: -2.37 Total: -8.33 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -24.91 -9.54 -34.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.179 kcal (2) G-P(sol) polarization free energy of solvation -24.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds