Wall clock time and date at job start Mon Mar 30 2020 05:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99480 * 2 1 4 4 H 1.48498 * 109.46692 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47492 * 299.99927 * 3 2 1 6 6 H 1.48503 * 109.47012 * 60.00539 * 3 2 1 7 7 C 1.37872 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99904 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00027 * 359.97438 * 7 2 1 10 10 H 1.09000 * 108.64830 * 55.89343 * 9 7 2 11 11 C 1.53891 * 108.78271 * 297.61952 * 9 7 2 12 12 C 1.50955 * 109.17135 * 155.08489 * 11 9 7 13 13 S 1.82607 * 111.06547 * 94.68868 * 12 11 9 14 14 C 1.82258 * 104.17360 * 319.44392 * 13 12 11 15 15 C 1.51079 * 110.48311 * 319.75900 * 14 13 12 16 16 N 1.38905 * 108.78030 * 174.17426 * 9 7 2 17 17 C 1.46902 * 111.00192 * 314.36259 * 16 9 7 18 18 C 1.53004 * 109.47258 * 292.46975 * 17 16 9 19 19 H 1.08997 * 110.80074 * 312.84417 * 18 17 16 20 20 C 1.54802 * 110.90417 * 189.22043 * 18 17 16 21 21 C 1.54103 * 104.18835 * 220.91956 * 20 18 17 22 22 O 1.43746 * 107.28903 * 357.96980 * 21 20 18 23 23 C 1.44421 * 107.00090 * 26.48828 * 22 21 20 24 24 H 0.97005 * 120.00645 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.51729 * 274.99128 * 11 9 7 26 26 H 1.09002 * 109.52454 * 35.10865 * 11 9 7 27 27 H 1.09003 * 109.15545 * 215.09547 * 12 11 9 28 28 H 1.08997 * 109.16137 * 334.27560 * 12 11 9 29 29 H 1.09007 * 109.30426 * 199.44473 * 14 13 12 30 30 H 1.09007 * 109.29982 * 80.06666 * 14 13 12 31 31 H 1.09002 * 109.76849 * 337.12867 * 15 14 13 32 32 H 1.08997 * 109.76910 * 216.34418 * 15 14 13 33 33 H 1.09002 * 109.46490 * 52.46610 * 17 16 9 34 34 H 1.08998 * 109.46705 * 172.46470 * 17 16 9 35 35 H 1.09003 * 110.49106 * 339.59534 * 20 18 17 36 36 H 1.09008 * 110.49174 * 102.11186 * 20 18 17 37 37 H 1.08993 * 109.88179 * 117.39343 * 21 20 18 38 38 H 1.09001 * 109.87676 * 238.39764 * 21 20 18 39 39 H 1.09000 * 110.64705 * 201.47891 * 23 22 21 40 40 H 1.09006 * 110.59965 * 78.47135 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5750 -2.5113 -0.8554 11 6 0.4189 -2.5909 1.2907 12 6 -0.7553 -3.5110 1.0594 13 16 -0.3719 -5.2128 1.5993 14 6 1.3472 -5.4772 1.0545 15 6 1.5661 -4.8772 -0.3146 16 7 2.1605 -3.5405 -0.1346 17 6 3.1385 -3.2525 -1.1923 18 6 2.4346 -3.2496 -2.5508 19 1 1.7914 -4.1234 -2.6553 20 6 3.4631 -3.1794 -3.7056 21 6 2.8309 -2.2021 -4.7155 22 8 1.5512 -1.8126 -4.1894 23 6 1.6281 -1.9417 -2.7530 24 1 -0.4851 0.8400 0.0004 25 1 1.0383 -2.9861 2.0958 26 1 0.0576 -1.5990 1.5625 27 1 -1.6142 -3.1427 1.6203 28 1 -0.9996 -3.5191 -0.0028 29 1 1.5525 -6.5471 1.0161 30 1 2.0268 -5.0083 1.7662 31 1 0.6126 -4.7896 -0.8355 32 1 2.2443 -5.5079 -0.8894 33 1 3.5889 -2.2760 -1.0144 34 1 3.9151 -4.0173 -1.1870 35 1 4.4159 -2.7919 -3.3449 36 1 3.5983 -4.1626 -4.1565 37 1 3.4671 -1.3246 -4.8302 38 1 2.7034 -2.6958 -5.6789 39 1 0.6315 -2.0346 -2.3215 40 1 2.1577 -1.0932 -2.3195 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259647881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:19 Heat of formation + Delta-G solvation = -39.881747 kcal Electronic energy + Delta-G solvation = -20842.832606 eV Core-core repulsion = 17976.696343 eV Total energy + Delta-G solvation = -2866.136263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.13178 -39.17270 -35.23805 -34.25002 -32.84788 -31.92774 -29.71978 -28.46745 -26.32004 -24.71610 -23.62442 -22.68826 -21.73670 -20.70877 -18.46942 -17.93704 -17.29951 -16.73203 -16.55264 -16.11769 -15.96347 -15.73223 -15.39921 -14.66728 -14.45373 -14.18366 -14.08879 -13.65792 -13.32738 -13.23015 -13.11539 -12.87373 -12.65440 -12.46871 -12.36164 -12.10422 -12.01634 -11.73868 -11.66173 -11.38640 -11.17321 -10.73425 -10.70256 -10.49984 -10.20090 -8.74061 -8.58424 -8.07193 -6.13641 0.93412 1.38319 1.44487 1.50311 1.69218 2.42585 3.16510 3.22662 3.34415 3.79620 3.92416 4.08056 4.12184 4.23529 4.31419 4.35250 4.35832 4.49621 4.52247 4.71738 4.74050 4.79546 4.83855 4.88696 4.90921 5.00825 5.07064 5.16713 5.21650 5.28676 5.31575 5.48674 5.58269 5.74820 5.86117 6.09703 6.23824 6.54634 6.92293 7.10426 7.54525 8.97476 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.009911 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.677714 B = 2824.434625 C = 4159.234914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.027 3.973 3 Si 0.930 3.070 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.227 3.773 10 H -0.017 1.017 11 C -0.097 4.097 12 C -0.046 4.046 13 S -0.324 6.324 14 C -0.053 4.053 15 C 0.063 3.937 16 N -0.552 5.552 17 C 0.080 3.920 18 C -0.140 4.140 19 H 0.069 0.931 20 C -0.137 4.137 21 C 0.038 3.962 22 O -0.423 6.423 23 C 0.065 3.935 24 H 0.257 0.743 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.123 0.877 30 H 0.087 0.913 31 H 0.027 0.973 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.639 -8.923 -3.938 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.173 4.173 3 Si 0.757 3.243 4 H -0.187 1.187 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.543 4.543 8 H 0.084 0.916 9 C 0.118 3.882 10 H 0.000 1.000 11 C -0.137 4.137 12 C -0.194 4.194 13 S -0.100 6.100 14 C -0.202 4.202 15 C -0.065 4.065 16 N -0.274 5.274 17 C -0.047 4.047 18 C -0.161 4.161 19 H 0.087 0.913 20 C -0.175 4.175 21 C -0.039 4.039 22 O -0.343 6.343 23 C -0.010 4.010 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.141 0.859 30 H 0.106 0.894 31 H 0.045 0.955 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.865 -9.446 -3.090 11.540 hybrid contribution 0.183 2.282 -1.013 2.504 sum 6.048 -7.164 -4.104 10.234 Atomic orbital electron populations 1.70021 1.06811 1.26736 1.51137 1.25409 0.95225 1.01169 0.95491 0.85929 0.79821 0.81549 0.76958 1.18727 1.21791 1.21361 1.21552 0.93114 0.90407 1.49236 0.91590 1.17848 0.90158 0.88411 0.91763 1.00034 1.21525 0.94133 0.98521 0.99518 1.23127 1.01892 0.92140 1.02234 1.86422 1.21341 1.21579 1.80650 1.23311 0.92294 1.04695 0.99870 1.22015 0.98553 0.90849 0.95123 1.58454 1.20727 1.01924 1.46322 1.22234 0.93946 1.02900 0.85630 1.23285 0.97760 0.97256 0.97750 0.91283 1.22906 0.98922 1.00924 0.94773 1.23311 0.84595 0.97732 0.98252 1.88803 1.34465 1.89099 1.21970 1.23904 1.00573 0.97793 0.78720 0.93331 0.93610 0.91109 0.89896 0.92486 0.85918 0.89401 0.95513 0.87927 0.90166 0.89548 0.89413 0.88564 0.92577 0.88678 0.91743 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.81 11.63 21.44 0.25 -48.56 16 2 C 0.03 1.37 4.86 84.65 0.41 1.78 16 3 Si 0.93 41.49 29.54 68.60 2.03 43.52 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 7 C -0.50 -24.24 5.05 25.60 0.13 -24.11 16 8 H 0.07 3.16 5.78 -2.91 -0.02 3.14 16 9 C 0.23 10.01 0.83 45.90 0.04 10.05 16 10 H -0.02 -0.86 4.03 -2.39 -0.01 -0.87 16 11 C -0.10 -4.34 4.76 30.23 0.14 -4.19 16 12 C -0.05 -1.85 5.75 71.32 0.41 -1.44 16 13 S -0.32 -11.19 22.05 -56.49 -1.25 -12.44 16 14 C -0.05 -1.57 5.85 71.36 0.42 -1.15 16 15 C 0.06 1.94 4.07 85.58 0.35 2.29 16 16 N -0.55 -20.11 3.86 -894.59 -3.45 -23.56 16 17 C 0.08 2.60 4.45 86.30 0.38 2.98 16 18 C -0.14 -4.49 2.87 -9.50 -0.03 -4.52 16 19 H 0.07 2.23 6.86 -2.39 -0.02 2.21 16 20 C -0.14 -3.40 6.60 31.58 0.21 -3.19 16 21 C 0.04 1.07 7.70 72.36 0.56 1.63 16 22 O -0.42 -16.83 11.52 -148.98 -1.72 -18.55 16 23 C 0.07 2.71 5.31 72.66 0.39 3.09 16 24 H 0.26 13.57 8.31 -92.70 -0.77 12.80 16 25 H 0.05 2.03 7.18 -2.39 -0.02 2.01 16 26 H 0.07 3.63 6.04 -2.39 -0.01 3.61 16 27 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 28 H 0.06 2.45 6.82 -2.39 -0.02 2.43 16 29 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 30 H 0.09 2.76 7.56 -2.38 -0.02 2.75 16 31 H 0.03 0.94 6.54 -2.39 -0.02 0.92 16 32 H 0.10 2.53 7.57 -2.39 -0.02 2.51 16 33 H 0.08 2.96 5.05 -2.39 -0.01 2.95 16 34 H 0.09 2.25 8.03 -2.39 -0.02 2.23 16 35 H 0.09 1.95 7.86 -2.39 -0.02 1.93 16 36 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.06 3.15 5.79 -2.39 -0.01 3.13 16 40 H 0.06 2.89 5.96 -2.38 -0.01 2.88 16 Total: -1.00 -55.75 298.11 0.31 -55.44 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 1.03 Total: 20.94 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 3.41 Total: -16.79 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -3.20 Total: -72.12 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -1.72 Total: -18.55 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 16 Polarization: -11.19 SS G_CDS: -1.25 Total: -12.44 kcal Total: -55.75 0.31 -55.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.560 kcal (2) G-P(sol) polarization free energy of solvation -55.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds