Wall clock time and date at job start Mon Mar 30 2020 05:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00210 * 2 1 4 4 H 1.48504 * 109.47135 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47112 * 120.00591 * 3 2 1 6 6 H 1.48503 * 109.46943 * 240.00481 * 3 2 1 7 7 C 1.37878 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00135 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.94890 * 56.03878 * 9 7 2 11 11 C 1.53021 * 109.96725 * 294.81873 * 9 7 2 12 12 C 1.45867 * 115.26637 * 148.15075 * 11 9 7 13 13 S 1.83746 * 109.14153 * 64.21254 * 12 11 9 14 14 C 1.80184 * 102.69412 * 292.59084 * 13 12 11 15 15 C 1.53612 * 113.03542 * 84.93274 * 14 13 12 16 16 N 1.45531 * 109.96898 * 177.35833 * 9 7 2 17 17 C 1.46905 * 110.99861 * 346.70237 * 16 9 7 18 18 C 1.53005 * 109.46840 * 178.03450 * 17 16 9 19 19 H 1.09005 * 110.74666 * 57.02313 * 18 17 16 20 20 C 1.55304 * 110.84410 * 180.71270 * 18 17 16 21 21 C 1.54949 * 100.93913 * 152.32628 * 20 18 17 22 22 O 1.43643 * 105.13501 * 323.55703 * 21 20 18 23 23 C 1.43234 * 109.97236 * 24.42834 * 22 21 20 24 24 H 0.97001 * 119.99797 * 359.97438 * 1 2 3 25 25 H 1.08996 * 108.32545 * 269.65209 * 11 9 7 26 26 H 1.09000 * 108.32549 * 26.65376 * 11 9 7 27 27 H 1.08998 * 109.52256 * 184.10862 * 12 11 9 28 28 H 1.08997 * 109.52328 * 304.31772 * 12 11 9 29 29 H 1.08997 * 108.76872 * 205.85062 * 14 13 12 30 30 H 1.08998 * 108.76437 * 324.13255 * 14 13 12 31 31 H 1.08992 * 108.15473 * 77.32225 * 15 14 13 32 32 H 1.09004 * 108.14963 * 194.08277 * 15 14 13 33 33 H 1.08992 * 109.47067 * 298.03582 * 17 16 9 34 34 H 1.09000 * 109.46926 * 58.03786 * 17 16 9 35 35 H 1.08996 * 111.12744 * 270.24438 * 20 18 17 36 36 H 1.09001 * 111.12547 * 34.41307 * 20 18 17 37 37 H 1.09006 * 110.30984 * 204.64336 * 21 20 18 38 38 H 1.08997 * 110.30829 * 82.47107 * 21 20 18 39 39 H 1.09006 * 109.83187 * 238.77154 * 23 22 21 40 40 H 1.09000 * 109.83144 * 117.80235 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1031 1.6963 1.2124 6 1 3.1029 1.6963 -1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5690 -2.5348 -0.8501 11 6 0.4674 -2.6501 1.3051 12 6 -0.7863 -3.3879 1.1971 13 16 -0.4244 -5.1235 0.7146 14 6 0.2061 -4.9447 -0.9638 15 6 1.7087 -4.6292 -1.0109 16 7 2.1857 -3.6128 -0.0642 17 6 3.5327 -3.1496 -0.4235 18 6 4.4954 -4.3387 -0.4325 19 1 4.1481 -5.1116 -1.1183 20 6 5.9354 -3.8813 -0.7919 21 6 6.7768 -4.9603 -0.0647 22 8 6.0633 -5.2359 1.1511 23 6 4.6781 -4.9086 0.9905 24 1 -0.4850 0.8401 0.0004 25 1 1.1032 -3.1592 2.0295 26 1 0.2469 -1.6543 1.6896 27 1 -1.2997 -3.3765 2.1586 28 1 -1.4181 -2.9235 0.4400 29 1 0.0252 -5.8721 -1.5070 30 1 -0.3357 -4.1381 -1.4578 31 1 2.2558 -5.5527 -0.8220 32 1 1.9535 -4.2922 -2.0183 33 1 3.5083 -2.6943 -1.4135 34 1 3.8707 -2.4140 0.3064 35 1 6.1008 -3.9139 -1.8687 36 1 6.1427 -2.8878 -0.3943 37 1 7.7721 -4.5765 0.1594 38 1 6.8461 -5.8608 -0.6750 39 1 4.3867 -4.1611 1.7284 40 1 4.0700 -5.8051 1.1107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259647886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:28 Heat of formation + Delta-G solvation = -31.823851 kcal Electronic energy + Delta-G solvation = -20238.026322 eV Core-core repulsion = 17372.239476 eV Total energy + Delta-G solvation = -2865.786846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.35753 -37.66707 -33.78585 -32.52023 -31.63493 -30.32393 -28.92589 -26.49134 -24.87499 -23.01896 -22.19431 -21.74796 -19.97164 -19.02734 -16.62602 -16.41985 -15.75538 -15.63108 -15.10434 -14.49947 -14.34901 -14.20274 -14.12151 -13.31555 -13.09006 -12.85053 -12.44433 -12.42051 -12.13393 -11.71297 -11.50452 -11.27429 -11.16472 -10.99496 -10.77813 -10.69679 -10.45671 -10.39383 -9.94000 -9.83111 -9.65335 -9.21913 -9.07349 -8.75096 -8.48743 -7.27594 -6.94660 -6.17611 -4.24260 2.48594 3.21338 3.23960 3.27072 3.29289 4.17228 4.29161 4.62296 4.92335 5.08251 5.14154 5.22787 5.35727 5.46641 5.49763 5.57823 5.80798 5.81642 5.87790 5.91160 6.06255 6.10085 6.13626 6.16318 6.24790 6.28650 6.46900 6.57262 6.65970 6.75784 7.00594 7.18317 7.26371 7.29095 7.61578 7.72761 7.91510 8.19842 8.46291 8.84774 9.43665 10.89403 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.008826 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.192541 B = 3171.598082 C = 4856.722987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.538 4.538 8 H 0.075 0.925 9 C 0.214 3.786 10 H 0.016 0.984 11 C -0.107 4.107 12 C -0.039 4.039 13 S -0.296 6.296 14 C -0.075 4.075 15 C 0.062 3.938 16 N -0.520 5.520 17 C 0.081 3.919 18 C -0.124 4.124 19 H 0.075 0.925 20 C -0.152 4.152 21 C 0.053 3.947 22 O -0.395 6.395 23 C 0.067 3.933 24 H 0.262 0.738 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.024 0.976 33 H 0.035 0.965 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.271 -7.339 -2.267 9.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.093 0.907 9 C 0.107 3.893 10 H 0.034 0.966 11 C -0.147 4.147 12 C -0.186 4.186 13 S -0.070 6.070 14 C -0.224 4.224 15 C -0.069 4.069 16 N -0.245 5.245 17 C -0.047 4.047 18 C -0.143 4.143 19 H 0.094 0.906 20 C -0.190 4.190 21 C -0.023 4.023 22 O -0.315 6.315 23 C -0.009 4.009 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.043 -8.444 -1.020 9.888 hybrid contribution 0.280 2.510 -1.850 3.131 sum 5.323 -5.933 -2.870 8.472 Atomic orbital electron populations 1.69947 1.05930 1.26935 1.49429 1.24975 0.94828 0.99182 0.94687 0.86670 0.79679 0.83076 0.78712 1.21260 1.20053 1.20313 1.21713 0.93812 0.90142 1.51950 0.90692 1.19061 0.90202 0.86993 0.93002 0.96646 1.20526 0.93201 0.99930 1.01054 1.22437 1.02228 0.90780 1.03130 1.86268 1.83134 1.17628 1.20011 1.23219 0.98621 1.04357 0.96182 1.22129 0.93396 0.97067 0.94261 1.62305 1.02367 1.13595 1.46189 1.22156 0.88335 0.93924 1.00299 1.22923 0.95123 0.99322 0.96970 0.90647 1.23284 0.94924 0.99862 1.00970 1.23277 0.95933 0.96865 0.86267 1.88356 1.21042 1.87326 1.34739 1.23098 0.80960 0.99978 0.96815 0.92783 0.92872 0.90037 0.89806 0.90552 0.88857 0.90292 0.92212 0.95839 0.94727 0.88846 0.90473 0.90156 0.90398 0.92880 0.90349 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.58 12.06 55.43 0.67 -22.91 16 2 C 0.07 1.71 5.07 -17.82 -0.09 1.62 16 3 Si 0.89 20.13 29.54 -169.99 -5.02 15.10 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -13.41 7.53 -34.44 -0.26 -13.66 16 8 H 0.08 1.82 4.69 -52.49 -0.25 1.57 16 9 C 0.21 4.90 1.84 -69.59 -0.13 4.77 16 10 H 0.02 0.40 6.06 -51.93 -0.31 0.09 16 11 C -0.11 -2.39 4.38 -30.10 -0.13 -2.52 16 12 C -0.04 -0.76 6.15 33.78 0.21 -0.55 16 13 S -0.30 -5.43 21.84 -107.50 -2.35 -7.78 16 14 C -0.07 -1.28 5.60 37.48 0.21 -1.07 16 15 C 0.06 1.08 4.49 -3.53 -0.02 1.07 16 16 N -0.52 -10.20 3.96 -228.74 -0.91 -11.10 16 17 C 0.08 1.47 2.88 -3.82 -0.01 1.46 16 18 C -0.12 -1.87 2.68 -88.68 -0.24 -2.11 16 19 H 0.08 1.10 6.60 -51.93 -0.34 0.76 16 20 C -0.15 -1.96 6.62 -24.48 -0.16 -2.13 16 21 C 0.05 0.67 7.78 38.19 0.30 0.97 16 22 O -0.39 -6.32 11.36 -35.23 -0.40 -6.72 16 23 C 0.07 1.08 7.22 37.88 0.27 1.35 16 24 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 25 H 0.05 1.20 7.88 -51.93 -0.41 0.79 16 26 H 0.08 2.03 6.39 -51.93 -0.33 1.70 16 27 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.09 1.35 8.14 -51.75 -0.42 0.93 16 30 H 0.08 1.44 7.02 -51.74 -0.36 1.08 16 31 H 0.06 0.97 6.91 -51.93 -0.36 0.61 16 32 H 0.02 0.41 7.89 -51.93 -0.41 0.00 16 33 H 0.03 0.67 7.81 -51.93 -0.41 0.26 16 34 H 0.09 1.86 5.90 -51.93 -0.31 1.55 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.36 7.76 -51.93 -0.40 0.96 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 310.57 15.07 4.68 4.68 Total: -1.00 -26.17 310.57 -9.78 -35.94 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.40 Total: 3.59 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.05 Total: -10.80 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: -0.24 Total: -34.02 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.40 Total: -6.72 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: -5.43 SS G_CDS: -2.35 Total: -7.78 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.17 -9.78 -35.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.120 kcal (2) G-P(sol) polarization free energy of solvation -26.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds