Wall clock time and date at job start Mon Mar 30 2020 05:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00210 * 2 1 4 4 H 1.48504 * 109.47135 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47112 * 120.00591 * 3 2 1 6 6 H 1.48503 * 109.46943 * 240.00481 * 3 2 1 7 7 C 1.37878 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00135 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.94890 * 56.03878 * 9 7 2 11 11 C 1.53021 * 109.96725 * 294.81873 * 9 7 2 12 12 C 1.45867 * 115.26637 * 148.15075 * 11 9 7 13 13 S 1.83746 * 109.14153 * 64.21254 * 12 11 9 14 14 C 1.80184 * 102.69412 * 292.59084 * 13 12 11 15 15 C 1.53612 * 113.03542 * 84.93274 * 14 13 12 16 16 N 1.45531 * 109.96898 * 177.35833 * 9 7 2 17 17 C 1.46905 * 110.99861 * 346.70237 * 16 9 7 18 18 C 1.53005 * 109.46840 * 178.03450 * 17 16 9 19 19 H 1.09005 * 110.74666 * 57.02313 * 18 17 16 20 20 C 1.55304 * 110.84410 * 180.71270 * 18 17 16 21 21 C 1.54949 * 100.93913 * 152.32628 * 20 18 17 22 22 O 1.43643 * 105.13501 * 323.55703 * 21 20 18 23 23 C 1.43234 * 109.97236 * 24.42834 * 22 21 20 24 24 H 0.97001 * 119.99797 * 359.97438 * 1 2 3 25 25 H 1.08996 * 108.32545 * 269.65209 * 11 9 7 26 26 H 1.09000 * 108.32549 * 26.65376 * 11 9 7 27 27 H 1.08998 * 109.52256 * 184.10862 * 12 11 9 28 28 H 1.08997 * 109.52328 * 304.31772 * 12 11 9 29 29 H 1.08997 * 108.76872 * 205.85062 * 14 13 12 30 30 H 1.08998 * 108.76437 * 324.13255 * 14 13 12 31 31 H 1.08992 * 108.15473 * 77.32225 * 15 14 13 32 32 H 1.09004 * 108.14963 * 194.08277 * 15 14 13 33 33 H 1.08992 * 109.47067 * 298.03582 * 17 16 9 34 34 H 1.09000 * 109.46926 * 58.03786 * 17 16 9 35 35 H 1.08996 * 111.12744 * 270.24438 * 20 18 17 36 36 H 1.09001 * 111.12547 * 34.41307 * 20 18 17 37 37 H 1.09006 * 110.30984 * 204.64336 * 21 20 18 38 38 H 1.08997 * 110.30829 * 82.47107 * 21 20 18 39 39 H 1.09006 * 109.83187 * 238.77154 * 23 22 21 40 40 H 1.09000 * 109.83144 * 117.80235 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1031 1.6963 1.2124 6 1 3.1029 1.6963 -1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5690 -2.5348 -0.8501 11 6 0.4674 -2.6501 1.3051 12 6 -0.7863 -3.3879 1.1971 13 16 -0.4244 -5.1235 0.7146 14 6 0.2061 -4.9447 -0.9638 15 6 1.7087 -4.6292 -1.0109 16 7 2.1857 -3.6128 -0.0642 17 6 3.5327 -3.1496 -0.4235 18 6 4.4954 -4.3387 -0.4325 19 1 4.1481 -5.1116 -1.1183 20 6 5.9354 -3.8813 -0.7919 21 6 6.7768 -4.9603 -0.0647 22 8 6.0633 -5.2359 1.1511 23 6 4.6781 -4.9086 0.9905 24 1 -0.4850 0.8401 0.0004 25 1 1.1032 -3.1592 2.0295 26 1 0.2469 -1.6543 1.6896 27 1 -1.2997 -3.3765 2.1586 28 1 -1.4181 -2.9235 0.4400 29 1 0.0252 -5.8721 -1.5070 30 1 -0.3357 -4.1381 -1.4578 31 1 2.2558 -5.5527 -0.8220 32 1 1.9535 -4.2922 -2.0183 33 1 3.5083 -2.6943 -1.4135 34 1 3.8707 -2.4140 0.3064 35 1 6.1008 -3.9139 -1.8687 36 1 6.1427 -2.8878 -0.3943 37 1 7.7721 -4.5765 0.1594 38 1 6.8461 -5.8608 -0.6750 39 1 4.3867 -4.1611 1.7284 40 1 4.0700 -5.8051 1.1107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259647886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:28 Heat of formation + Delta-G solvation = -46.910742 kcal Electronic energy + Delta-G solvation = -20238.680539 eV Core-core repulsion = 17372.239476 eV Total energy + Delta-G solvation = -2866.441063 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64313 -39.18121 -35.44140 -34.14931 -33.20771 -31.72819 -30.18426 -28.22474 -26.41047 -24.67753 -23.51865 -23.03543 -21.40279 -20.70755 -18.29506 -17.69772 -17.22348 -17.19012 -16.50729 -16.16803 -15.90241 -15.63130 -15.47356 -14.83186 -14.58869 -14.14590 -14.03968 -13.95321 -13.59664 -13.34683 -13.07581 -12.82322 -12.72357 -12.39904 -12.30479 -12.01634 -11.88899 -11.79308 -11.61886 -11.54240 -11.16080 -10.79270 -10.60802 -10.38966 -10.31783 -8.88653 -8.45944 -8.13670 -6.25779 0.99406 1.39910 1.42000 1.47582 1.71820 2.39950 3.04427 3.15445 3.25697 3.72704 3.83920 3.98863 4.08396 4.14759 4.20024 4.38361 4.38745 4.46420 4.55602 4.64227 4.69655 4.79442 4.85234 4.88250 4.95615 4.97485 5.06035 5.06687 5.15234 5.20837 5.36592 5.41361 5.54703 5.70026 5.88155 6.08720 6.14514 6.40411 6.75217 6.94589 7.45431 8.91477 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.008826 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.192541 B = 3171.598082 C = 4856.722987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.946 3.054 4 H -0.289 1.289 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.079 0.921 9 C 0.221 3.779 10 H -0.013 1.013 11 C -0.092 4.092 12 C -0.040 4.040 13 S -0.279 6.279 14 C -0.075 4.075 15 C 0.060 3.940 16 N -0.524 5.524 17 C 0.088 3.912 18 C -0.115 4.115 19 H 0.088 0.912 20 C -0.147 4.147 21 C 0.050 3.950 22 O -0.413 6.413 23 C 0.073 3.927 24 H 0.260 0.740 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.127 0.873 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.027 0.973 33 H 0.022 0.978 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.653 -8.680 -3.052 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.773 3.227 4 H -0.214 1.214 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.097 0.903 9 C 0.114 3.886 10 H 0.005 0.995 11 C -0.132 4.132 12 C -0.188 4.188 13 S -0.053 6.053 14 C -0.224 4.224 15 C -0.070 4.070 16 N -0.248 5.248 17 C -0.039 4.039 18 C -0.134 4.134 19 H 0.107 0.893 20 C -0.185 4.185 21 C -0.026 4.026 22 O -0.334 6.334 23 C -0.003 4.003 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.445 -9.797 -1.809 11.866 hybrid contribution -0.110 2.874 -1.623 3.302 sum 6.335 -6.923 -3.432 9.992 Atomic orbital electron populations 1.70064 1.07061 1.27278 1.50569 1.25652 0.95506 1.02040 0.94744 0.85786 0.78508 0.79662 0.78763 1.21437 1.19808 1.19717 1.22115 0.94308 0.91226 1.51031 0.90315 1.18828 0.90212 0.87603 0.91992 0.99502 1.20341 0.94153 0.98372 1.00355 1.22275 1.00741 0.92129 1.03618 1.86170 1.83241 1.15095 1.20842 1.23329 0.98044 1.05488 0.95512 1.22200 0.93954 0.97001 0.93840 1.62281 1.02422 1.12702 1.47432 1.21998 0.88292 0.94999 0.98643 1.22808 0.95630 0.98099 0.96892 0.89328 1.23288 0.93183 0.99621 1.02452 1.23508 0.96217 0.97586 0.85288 1.88337 1.20915 1.87444 1.36674 1.22937 0.81390 0.99322 0.96651 0.93095 0.93526 0.93326 0.88374 0.92039 0.85469 0.91877 0.90117 0.95501 0.95963 0.91099 0.88227 0.90886 0.88591 0.90975 0.92555 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.90 12.06 21.45 0.26 -49.64 16 2 C 0.02 1.09 5.07 84.65 0.43 1.52 16 3 Si 0.95 41.77 29.54 68.60 2.03 43.80 16 4 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -27.88 7.53 25.60 0.19 -27.69 16 8 H 0.08 3.87 4.69 -2.91 -0.01 3.86 16 9 C 0.22 10.32 1.84 44.43 0.08 10.40 16 10 H -0.01 -0.66 6.06 -2.39 -0.01 -0.67 16 11 C -0.09 -4.21 4.38 28.41 0.12 -4.08 16 12 C -0.04 -1.60 6.15 69.80 0.43 -1.18 16 13 S -0.28 -9.87 21.84 -56.49 -1.23 -11.11 16 14 C -0.08 -2.43 5.60 72.19 0.40 -2.03 16 15 C 0.06 2.00 4.49 86.52 0.39 2.39 16 16 N -0.52 -20.38 3.96 -877.61 -3.47 -23.86 16 17 C 0.09 3.18 2.88 86.30 0.25 3.43 16 18 C -0.12 -3.25 2.68 -9.53 -0.03 -3.28 16 19 H 0.09 2.30 6.60 -2.38 -0.02 2.29 16 20 C -0.15 -3.43 6.62 32.05 0.21 -3.22 16 21 C 0.05 1.11 7.78 72.65 0.56 1.67 16 22 O -0.41 -12.45 11.36 -148.98 -1.69 -14.14 16 23 C 0.07 2.25 7.22 72.45 0.52 2.77 16 24 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 25 H 0.05 2.13 7.88 -2.39 -0.02 2.12 16 26 H 0.05 2.52 6.39 -2.39 -0.02 2.50 16 27 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 28 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.13 3.27 8.14 -2.51 -0.02 3.25 16 30 H 0.06 2.27 7.02 -2.51 -0.02 2.25 16 31 H 0.08 2.37 6.91 -2.39 -0.02 2.36 16 32 H 0.03 0.89 7.89 -2.38 -0.02 0.87 16 33 H 0.02 0.85 7.81 -2.39 -0.02 0.83 16 34 H 0.07 2.86 5.90 -2.39 -0.01 2.84 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.81 8.04 -2.39 -0.02 1.79 16 37 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.96 7.76 -2.38 -0.02 1.94 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -56.45 310.57 0.47 -55.98 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 1.01 Total: 18.26 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 3.57 Total: -19.28 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -3.22 Total: -73.50 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -1.69 Total: -14.14 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: -9.87 SS G_CDS: -1.23 Total: -11.11 kcal Total: -56.45 0.47 -55.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.067 kcal (2) G-P(sol) polarization free energy of solvation -56.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds