Wall clock time and date at job start Mon Mar 30 2020 05:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99604 * 2 1 4 4 H 1.48503 * 109.46845 * 239.99606 * 3 2 1 5 5 H 1.48497 * 109.47500 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47064 * 120.00217 * 3 2 1 7 7 C 1.37874 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99782 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00074 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.45780 * 59.96930 * 9 7 2 11 11 C 1.53036 * 109.46458 * 179.97438 * 9 7 2 12 12 C 1.53129 * 109.30712 * 60.85634 * 11 9 7 13 13 H 1.09000 * 109.49266 * 297.71169 * 12 11 9 14 14 C 1.52992 * 109.55413 * 177.51823 * 12 11 9 15 15 C 1.52587 * 109.22594 * 181.53409 * 14 12 11 16 16 C 1.53100 * 109.95579 * 169.00409 * 15 14 12 17 17 S 1.81743 * 108.84011 * 63.02562 * 16 15 14 18 18 O 1.42106 * 109.46967 * 62.73186 * 17 16 15 19 19 C 1.81747 * 102.22349 * 306.73398 * 17 16 15 20 20 C 1.52586 * 109.22823 * 60.30076 * 14 12 11 21 21 C 1.53123 * 109.15931 * 57.59477 * 12 11 9 22 22 C 1.53039 * 109.31189 * 302.40768 * 21 12 11 23 23 N 1.46842 * 109.52266 * 59.15550 * 22 21 12 24 24 H 0.97000 * 119.99866 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.50390 * 180.76933 * 11 9 7 26 26 H 1.08997 * 109.50400 * 300.85674 * 11 9 7 27 27 H 1.09003 * 109.22709 * 300.89453 * 14 12 11 28 28 H 1.09001 * 109.38991 * 289.15348 * 15 14 12 29 29 H 1.08999 * 109.38967 * 48.85533 * 15 14 12 30 30 H 1.08997 * 109.57800 * 303.21714 * 16 15 14 31 31 H 1.09004 * 109.67956 * 182.89716 * 16 15 14 32 32 H 1.08999 * 109.57402 * 293.45956 * 19 17 16 33 33 H 1.08997 * 109.68450 * 173.13800 * 19 17 16 34 34 H 1.08999 * 109.38808 * 311.14268 * 20 14 12 35 35 H 1.08997 * 109.38894 * 70.84730 * 20 14 12 36 36 H 1.09002 * 109.50371 * 182.44317 * 21 12 11 37 37 H 1.09003 * 109.50070 * 62.36477 * 21 12 11 38 38 H 1.08995 * 109.46501 * 179.17754 * 22 21 12 39 39 H 1.09002 * 109.45552 * 299.15457 * 22 21 12 40 40 H 1.00898 * 111.00242 * 62.36287 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6245 -2.5566 -0.8895 11 6 2.2458 -3.6621 0.0005 12 6 3.1098 -3.5895 1.2627 13 1 3.6841 -2.6631 1.2575 14 6 4.0644 -4.7844 1.2993 15 6 4.8947 -4.7253 2.5782 16 6 5.6539 -6.0409 2.7695 17 16 6.8163 -6.2539 1.3887 18 8 7.7715 -5.2019 1.4071 19 6 5.7336 -6.0638 -0.0586 20 6 4.9654 -4.7457 0.0684 21 6 2.2021 -3.6218 2.4955 22 6 1.2086 -2.4600 2.4231 23 7 0.4060 -2.5762 1.1990 24 1 -0.4850 0.8401 -0.0004 25 1 1.7016 -4.6064 -0.0133 26 1 2.8828 -3.5962 -0.8815 27 1 3.4847 -5.7075 1.2909 28 1 5.6070 -3.9031 2.5095 29 1 4.2353 -4.5608 3.4304 30 1 4.9480 -6.8713 2.7840 31 1 6.2048 -6.0135 3.7097 32 1 5.0292 -6.8946 -0.0993 33 1 6.3348 -6.0500 -0.9676 34 1 4.3551 -4.5953 -0.8221 35 1 5.6730 -3.9222 0.1638 36 1 2.8083 -3.5267 3.3964 37 1 1.6571 -4.5655 2.5216 38 1 0.5516 -2.4891 3.2923 39 1 1.7539 -1.5162 2.4115 40 1 -0.1390 -3.4252 1.2031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259712541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:12 Heat of formation + Delta-G solvation = -52.994723 kcal Electronic energy + Delta-G solvation = -20074.140466 eV Core-core repulsion = 17207.435582 eV Total energy + Delta-G solvation = -2866.704884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.01599 -36.19429 -35.59306 -32.37597 -31.62067 -30.75848 -29.69446 -26.33405 -25.10424 -23.36803 -21.92271 -21.11294 -19.81946 -19.11833 -17.71307 -15.92836 -15.88297 -15.24281 -15.11887 -14.54182 -14.02037 -13.82418 -13.67429 -13.60379 -13.20883 -12.87369 -12.81335 -12.24629 -11.98649 -11.83377 -11.70646 -11.51407 -11.14248 -10.98801 -10.81035 -10.78515 -10.55870 -10.30188 -10.18774 -10.05082 -9.75203 -9.46549 -9.16065 -8.81864 -8.30297 -8.20436 -6.70509 -5.82212 -3.93547 1.63785 2.51641 3.36142 3.41137 3.44378 3.78366 4.51425 4.75129 4.82509 4.83267 5.02467 5.20078 5.35026 5.37958 5.46851 5.62834 5.68212 5.75344 5.87451 5.93887 6.02890 6.05633 6.10374 6.18537 6.32088 6.34217 6.42636 6.46001 6.63158 6.69127 6.95970 7.00393 7.08907 7.25623 7.65877 7.94308 8.26866 8.67032 8.95216 9.25712 9.72792 11.22623 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.026078 B = 0.005329 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.463605 B = 5253.005984 C = 5646.268952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.083 3.917 3 Si 0.874 3.126 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.527 4.527 8 H 0.051 0.949 9 C 0.217 3.783 10 H 0.037 0.963 11 C -0.137 4.137 12 C -0.068 4.068 13 H 0.077 0.923 14 C -0.093 4.093 15 C -0.116 4.116 16 C -0.437 4.437 17 S 1.228 4.772 18 O -0.854 6.854 19 C -0.436 4.436 20 C -0.116 4.116 21 C -0.146 4.146 22 C 0.075 3.925 23 N -0.649 5.649 24 H 0.254 0.746 25 H 0.031 0.969 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.044 0.956 38 H 0.041 0.959 39 H 0.079 0.921 40 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.807 -17.203 3.960 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.565 4.565 8 H 0.069 0.931 9 C 0.109 3.891 10 H 0.055 0.945 11 C -0.176 4.176 12 C -0.087 4.087 13 H 0.095 0.905 14 C -0.111 4.111 15 C -0.154 4.154 16 C -0.574 4.574 17 S 1.425 4.575 18 O -0.849 6.849 19 C -0.573 4.573 20 C -0.154 4.154 21 C -0.185 4.185 22 C -0.056 4.056 23 N -0.275 5.275 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.132 0.868 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.434 -16.550 3.962 19.458 hybrid contribution -0.085 2.004 0.042 2.006 sum 9.349 -14.546 4.004 17.749 Atomic orbital electron populations 1.70083 1.05563 1.25520 1.47247 1.24927 0.94555 0.98280 0.94596 0.86978 0.79882 0.84408 0.78494 1.20475 1.21363 1.20501 1.20846 0.92008 0.90214 1.53482 0.93106 1.19135 0.88988 0.91526 0.89407 0.94506 1.22387 0.99355 0.99499 0.96382 1.21027 0.95185 0.96757 0.95689 0.90484 1.21303 0.96463 1.00465 0.92914 1.21559 0.99127 0.95258 0.99453 1.27612 1.11726 1.03769 1.14322 1.69946 0.83865 1.15937 0.87714 1.93130 1.46297 1.61314 1.84161 1.27612 1.10932 1.03798 1.15005 1.21537 0.98697 0.95056 1.00078 1.22385 0.98959 1.00030 0.97160 1.21722 0.93604 0.97586 0.92643 1.60800 1.26050 1.38865 1.01801 0.93566 0.95030 0.92823 0.91318 0.91856 0.90583 0.86764 0.87891 0.86748 0.87784 0.90176 0.91824 0.93186 0.93764 0.94036 0.90266 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.81 12.77 55.43 0.71 -24.10 16 2 C 0.08 2.31 5.39 -17.82 -0.10 2.22 16 3 Si 0.87 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.53 -14.28 6.47 -34.44 -0.22 -14.50 16 8 H 0.05 1.39 6.77 -52.49 -0.36 1.04 16 9 C 0.22 5.30 2.95 -68.88 -0.20 5.09 16 10 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 11 C -0.14 -2.73 4.44 -26.65 -0.12 -2.84 16 12 C -0.07 -1.24 1.58 -90.49 -0.14 -1.39 16 13 H 0.08 1.65 6.74 -51.93 -0.35 1.30 16 14 C -0.09 -1.35 1.53 -91.05 -0.14 -1.49 16 15 C -0.12 -1.58 4.93 -26.89 -0.13 -1.72 16 16 C -0.44 -4.19 6.44 37.21 0.24 -3.95 16 17 S 1.23 11.48 13.75 -107.50 -1.48 10.01 16 18 O -0.85 -14.23 18.14 -35.23 -0.64 -14.87 16 19 C -0.44 -4.39 6.44 37.21 0.24 -4.15 16 20 C -0.12 -1.67 4.95 -26.89 -0.13 -1.81 16 21 C -0.15 -2.57 4.92 -26.65 -0.13 -2.71 16 22 C 0.08 1.59 6.31 -3.84 -0.02 1.56 16 23 N -0.65 -15.13 5.98 -107.99 -0.65 -15.77 16 24 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.08 6.33 -51.93 -0.33 0.75 16 27 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 28 H 0.06 1.02 8.06 -51.93 -0.42 0.60 16 29 H 0.08 1.03 5.87 -51.93 -0.31 0.73 16 30 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.22 5.93 -51.93 -0.31 0.91 16 35 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16 36 H 0.05 0.82 6.30 -51.93 -0.33 0.49 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.93 6.99 -51.93 -0.36 1.57 16 40 H 0.30 6.26 8.86 -39.29 -0.35 5.91 16 LS Contribution 309.26 15.07 4.66 4.66 Total: -1.00 -34.50 309.26 -9.74 -44.24 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.46 Total: 4.82 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -0.86 Total: -25.67 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.06 Total: -39.88 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.64 Total: -14.87 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 11.48 SS G_CDS: -1.48 Total: 10.01 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.50 -9.74 -44.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.753 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds