Wall clock time and date at job start Mon Mar 30 2020 05:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99604 * 2 1 4 4 H 1.48503 * 109.46845 * 239.99606 * 3 2 1 5 5 H 1.48497 * 109.47500 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47064 * 120.00217 * 3 2 1 7 7 C 1.37874 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99782 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00074 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.45780 * 59.96930 * 9 7 2 11 11 C 1.53036 * 109.46458 * 179.97438 * 9 7 2 12 12 C 1.53129 * 109.30712 * 60.85634 * 11 9 7 13 13 H 1.09000 * 109.49266 * 297.71169 * 12 11 9 14 14 C 1.52992 * 109.55413 * 177.51823 * 12 11 9 15 15 C 1.52587 * 109.22594 * 181.53409 * 14 12 11 16 16 C 1.53100 * 109.95579 * 169.00409 * 15 14 12 17 17 S 1.81743 * 108.84011 * 63.02562 * 16 15 14 18 18 O 1.42106 * 109.46967 * 62.73186 * 17 16 15 19 19 C 1.81747 * 102.22349 * 306.73398 * 17 16 15 20 20 C 1.52586 * 109.22823 * 60.30076 * 14 12 11 21 21 C 1.53123 * 109.15931 * 57.59477 * 12 11 9 22 22 C 1.53039 * 109.31189 * 302.40768 * 21 12 11 23 23 N 1.46842 * 109.52266 * 59.15550 * 22 21 12 24 24 H 0.97000 * 119.99866 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.50390 * 180.76933 * 11 9 7 26 26 H 1.08997 * 109.50400 * 300.85674 * 11 9 7 27 27 H 1.09003 * 109.22709 * 300.89453 * 14 12 11 28 28 H 1.09001 * 109.38991 * 289.15348 * 15 14 12 29 29 H 1.08999 * 109.38967 * 48.85533 * 15 14 12 30 30 H 1.08997 * 109.57800 * 303.21714 * 16 15 14 31 31 H 1.09004 * 109.67956 * 182.89716 * 16 15 14 32 32 H 1.08999 * 109.57402 * 293.45956 * 19 17 16 33 33 H 1.08997 * 109.68450 * 173.13800 * 19 17 16 34 34 H 1.08999 * 109.38808 * 311.14268 * 20 14 12 35 35 H 1.08997 * 109.38894 * 70.84730 * 20 14 12 36 36 H 1.09002 * 109.50371 * 182.44317 * 21 12 11 37 37 H 1.09003 * 109.50070 * 62.36477 * 21 12 11 38 38 H 1.08995 * 109.46501 * 179.17754 * 22 21 12 39 39 H 1.09002 * 109.45552 * 299.15457 * 22 21 12 40 40 H 1.00898 * 111.00242 * 62.36287 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6245 -2.5566 -0.8895 11 6 2.2458 -3.6621 0.0005 12 6 3.1098 -3.5895 1.2627 13 1 3.6841 -2.6631 1.2575 14 6 4.0644 -4.7844 1.2993 15 6 4.8947 -4.7253 2.5782 16 6 5.6539 -6.0409 2.7695 17 16 6.8163 -6.2539 1.3887 18 8 7.7715 -5.2019 1.4071 19 6 5.7336 -6.0638 -0.0586 20 6 4.9654 -4.7457 0.0684 21 6 2.2021 -3.6218 2.4955 22 6 1.2086 -2.4600 2.4231 23 7 0.4060 -2.5762 1.1990 24 1 -0.4850 0.8401 -0.0004 25 1 1.7016 -4.6064 -0.0133 26 1 2.8828 -3.5962 -0.8815 27 1 3.4847 -5.7075 1.2909 28 1 5.6070 -3.9031 2.5095 29 1 4.2353 -4.5608 3.4304 30 1 4.9480 -6.8713 2.7840 31 1 6.2048 -6.0135 3.7097 32 1 5.0292 -6.8946 -0.0993 33 1 6.3348 -6.0500 -0.9676 34 1 4.3551 -4.5953 -0.8221 35 1 5.6730 -3.9222 0.1638 36 1 2.8083 -3.5267 3.3964 37 1 1.6571 -4.5655 2.5216 38 1 0.5516 -2.4891 3.2923 39 1 1.7539 -1.5162 2.4115 40 1 -0.1390 -3.4252 1.2031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259712541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:11 Heat of formation + Delta-G solvation = -78.943048 kcal Electronic energy + Delta-G solvation = -20075.265670 eV Core-core repulsion = 17207.435582 eV Total energy + Delta-G solvation = -2867.830088 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.49010 -37.62158 -36.69703 -34.39114 -32.67287 -32.26038 -31.37658 -27.69502 -26.98609 -24.55141 -23.38105 -22.64359 -21.15980 -20.83034 -18.58638 -17.98608 -17.03186 -16.70879 -16.46325 -16.12907 -15.27311 -15.17549 -15.00004 -14.88308 -14.77435 -14.14803 -13.97850 -13.88126 -13.49725 -13.32359 -13.00015 -12.87996 -12.66267 -12.57683 -12.52663 -12.20323 -12.10791 -11.96641 -11.62228 -11.51221 -11.23462 -11.05267 -10.82721 -10.55378 -10.39490 -9.09928 -8.49031 -7.98688 -6.14884 0.86709 1.33041 1.34488 1.40900 1.75543 2.41004 2.95990 3.23313 3.63232 3.71774 3.77067 3.97424 4.07243 4.22877 4.29773 4.37187 4.41879 4.47176 4.58116 4.64170 4.77219 4.81909 4.89189 4.94587 5.00217 5.03936 5.07628 5.15325 5.16890 5.23835 5.35111 5.44541 5.47656 5.59101 5.72197 5.80922 6.22070 6.69971 7.00097 7.38306 7.53899 9.04244 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.026078 B = 0.005329 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.463605 B = 5253.005984 C = 5646.268952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.038 3.962 3 Si 0.927 3.073 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.037 0.963 9 C 0.216 3.784 10 H 0.003 0.997 11 C -0.125 4.125 12 C -0.065 4.065 13 H 0.031 0.969 14 C -0.084 4.084 15 C -0.119 4.119 16 C -0.433 4.433 17 S 1.295 4.705 18 O -0.932 6.932 19 C -0.434 4.434 20 C -0.120 4.120 21 C -0.134 4.134 22 C 0.077 3.923 23 N -0.668 5.668 24 H 0.253 0.747 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.105 0.895 28 H 0.023 0.977 29 H 0.081 0.919 30 H 0.161 0.839 31 H 0.114 0.886 32 H 0.159 0.841 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.021 0.979 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.036 0.964 40 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.858 -20.449 4.992 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.165 4.165 3 Si 0.754 3.246 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.055 0.945 9 C 0.108 3.892 10 H 0.021 0.979 11 C -0.165 4.165 12 C -0.084 4.084 13 H 0.049 0.951 14 C -0.102 4.102 15 C -0.157 4.157 16 C -0.571 4.571 17 S 1.495 4.505 18 O -0.928 6.928 19 C -0.571 4.571 20 C -0.159 4.159 21 C -0.173 4.173 22 C -0.053 4.053 23 N -0.296 5.296 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.179 0.821 31 H 0.132 0.868 32 H 0.177 0.823 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.512 -19.799 4.992 22.525 hybrid contribution -0.162 3.024 -0.283 3.042 sum 9.350 -16.774 4.709 19.773 Atomic orbital electron populations 1.70188 1.06583 1.25943 1.48747 1.25521 0.95281 1.01023 0.94712 0.86138 0.78836 0.81395 0.78252 1.20202 1.20679 1.20701 1.21107 0.91567 0.91935 1.52407 0.94467 1.18953 0.89340 0.92187 0.88762 0.97949 1.22186 0.98518 0.98649 0.97119 1.20927 0.95403 0.96813 0.95217 0.95055 1.21240 0.95928 0.99743 0.93290 1.21540 0.98657 0.96469 0.99036 1.27655 1.12014 1.02798 1.14613 1.69068 0.81997 1.12849 0.86608 1.92998 1.50766 1.63552 1.85504 1.27679 1.11346 1.02515 1.15596 1.21522 0.98183 0.96412 0.99740 1.22245 0.98176 0.99518 0.97375 1.21630 0.94211 0.97250 0.92236 1.60538 1.26850 1.40250 1.01978 0.93789 0.92307 0.93658 0.87706 0.95822 0.90095 0.82148 0.86762 0.82294 0.87264 0.91319 0.95977 0.91586 0.90826 0.92427 0.94514 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.62 12.77 21.45 0.27 -52.35 16 2 C 0.04 2.17 5.39 84.65 0.46 2.63 16 3 Si 0.93 45.97 29.54 68.60 2.03 47.99 16 4 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.53 -29.91 6.47 25.60 0.17 -29.75 16 8 H 0.04 2.15 6.77 -2.91 -0.02 2.13 16 9 C 0.22 10.74 2.95 44.19 0.13 10.87 16 10 H 0.00 0.14 8.14 -2.39 -0.02 0.13 16 11 C -0.13 -4.92 4.44 30.65 0.14 -4.78 16 12 C -0.06 -2.32 1.58 -10.71 -0.02 -2.34 16 13 H 0.03 1.40 6.74 -2.39 -0.02 1.38 16 14 C -0.08 -2.21 1.53 -11.07 -0.02 -2.23 16 15 C -0.12 -2.97 4.93 30.49 0.15 -2.82 16 16 C -0.43 -6.42 6.44 72.02 0.46 -5.96 16 17 S 1.29 20.77 13.75 -56.49 -0.78 19.99 16 18 O -0.93 -31.03 18.14 -148.98 -2.70 -33.73 16 19 C -0.43 -7.31 6.44 72.01 0.46 -6.85 16 20 C -0.12 -3.36 4.95 30.49 0.15 -3.21 16 21 C -0.13 -4.43 4.92 30.65 0.15 -4.28 16 22 C 0.08 3.23 6.31 86.33 0.54 3.77 16 23 N -0.67 -31.13 5.98 -495.58 -2.96 -34.09 16 24 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.04 1.83 6.33 -2.39 -0.02 1.82 16 27 H 0.10 2.11 8.08 -2.39 -0.02 2.09 16 28 H 0.02 0.76 8.06 -2.39 -0.02 0.74 16 29 H 0.08 1.94 5.87 -2.39 -0.01 1.93 16 30 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 2.05 5.93 -2.39 -0.01 2.04 16 35 H 0.02 0.77 8.06 -2.39 -0.02 0.75 16 36 H 0.07 1.99 6.30 -2.39 -0.02 1.98 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.04 1.83 6.99 -2.39 -0.02 1.82 16 40 H 0.31 12.77 8.86 -89.70 -0.79 11.98 16 Total: -1.00 -80.41 309.26 -1.13 -81.54 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.23 Total: 15.60 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 2.78 Total: -44.95 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -2.69 Total: -86.44 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -2.70 Total: -33.73 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 16 Polarization: 20.77 SS G_CDS: -0.78 Total: 19.99 kcal Total: -80.41 -1.13 -81.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.596 kcal (2) G-P(sol) polarization free energy of solvation -80.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds